Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq106 134 2e-26 seq6 120 4e-22 seq10 104 3e-17 seq5 100 4e-16 >seq106 Length=555726 Score = 134 bits (148), Expect = 2e-26 Identities = 134/174 (77%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 77337 CGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAA 77396 ||||||||| ||| || ||||||||||| | || || |||||||| | ||||| |||| Sbjct 336130 CGCTAAATATTTTCTTGGTTTCCTTGTGCAAGTTAGAGACGGCTATCCGGGCAGCCAGAA 336071 Query 77397 TTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTA 77456 | ||||| || || || | ||| || |||||||||| | || || ||||| || || | Sbjct 336070 TGGCATAATCTGGGTGCTTTGTGGTCAGGGTGGCTGCTGTCTCCGCTGCTAATGTGTCCA 336011 Query 77457 ATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTT 77510 ||||||||| || || || ||||| ||||| ||||| |||||||| | |||| Sbjct 336010 GTTCTATAGTTGTGACCCCATTATAAAGCCCCTGAATGACTTTCATAGTGATTT 335957 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| |||| ||| ||||| || || ||||||||||||||||| | |||||| Sbjct 338670 GTACCAGCATTGAACAGTGTGGGAGAAGCGTGCGTGAACCATTTTTCAGACAACAGATTG 338611 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||| ||| | || || || || || ||| || || || | || | ||||| | Sbjct 338610 TAGGTTTCGATAGCGGCGTCAATGTCTGTTTTATGTATGCCAACGGATACCCTCATCAGC 338551 Query 77114 ATATGCTGAGGTCGTTCT 77131 || ||||| || || ||| Sbjct 338550 ATGTGCTGTGGGCGCTCT 338533 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || || || ||||||| ||||| || ||||| ||||| ||||||||||| || | || Sbjct 351711 TGGAACTCGCCAGACAGGACTCTGCGTGTGTATATATTGCTGGTATATGGCTCAATGGAC 351652 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| ||||| ||||| ||||| || ||||| || |||| | ||||| Sbjct 351651 TCATTATTGCCCAGGATTTGTGCAGTGGAAGCCGTGGGCATTGGAGCCAGAAGCAAACTG 351592 Query 75842 TT 75843 || Sbjct 351591 TT 351590 >seq6 Length=135134832 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | || || || || ||||| |||||||| ||||| | || || Sbjct 118784197 TCATCTCTACTGATCAGCTCATTGGAGAAGGTGAGTCCAGGCATGAGTCCCCTTTTCTTT 118784138 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || ||||| || || |||||||| |||||||| |||||||| || |||||||| Sbjct 118784137 AGCCAGAAAATAGCAGCAAAGGATCCAGAGAAGAATATTCCTTCTACTGCAGCGAATGCC 118784078 Query 46774 ACAAGTCTCTCTCC 46787 || | ||||||||| Sbjct 118784077 ACCACTCTCTCTCC 118784064 >seq10 Length=39945785 Score = 104 bits (114), Expect = 3e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 170098 TATGAGCCAGGAAAACGTAGATGGCTTAAAATAAAGAGAGACTACTTGAATGAGGGTTCG 170157 ||||||||||| |||||| ||||||||| |||||| || ||||||||||| ||| | Sbjct 19250020 TATGAGCCAGGGAAACGTCATTGGCTTAAAGTAAAGAAGGATTACTTGAATGAAGGTGCA 19249961 Query 170158 ATGGCGGATTCTGCAGATTTAGTAGTATTGGGGGCATATTATGGAAAAGGAACAAAGGGT 170217 ||||| || | || || || | ||| ||||| || ||||||||||| ||| |||| ||| Sbjct 19249960 ATGGCAGACACCGCTGACTTGGCAGTTTTGGGAGCTTATTATGGAAAGGGAGCAAATGGT 19249901 >seq5 Length=146437384 Score = 100 bits (110), Expect = 4e-16 Identities = 107/140 (76%), Gaps = 5/140 (4%) Strand=Plus/Minus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTT----CTTGTGACATAACTCCCATT 46338 ||||||| ||| ||| ||||| || || || ||| |||| ||||| || ||||| Sbjct 134156649 TTTAAAATTCGGCATTTAAAGTGAATTGCTTGTCTGTTGCCTTG-GACATGACACCCATC 134156591 Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || |||||||| | || ||||| || |||||||| || |||||||| ||||| || Sbjct 134156590 TTCTGGTATTCGGCAACTTTCTTCTCAAAGAAATTAGTCTTTCCTTCCAAGGATATGTTC 134156531 Query 46399 TCCATAAAATCAAACGGATT 46418 |||||||||||||| ||||| Sbjct 134156530 TCCATAAAATCAAATGGATT 134156511 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| || ||||| ||||||||||| || |||||||| || ||||| | ||| |||||| | Sbjct 134140823 TACCTCCTCAGCAGTCCAGAATGAAGCTTCTGCTTTCTTGTACATTTGCCAGATATCATG 134140764 Query 47187 ATATTGGATCGGAAAAATAACAAATCTATTTGGATT 47222 ||| || || || || || |||||||||| |||||| Sbjct 134140763 ATACTGAATGGGGAAGATCACAAATCTATGTGGATT 134140728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712873604519040