Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2 136 9e-27 seq1 118 2e-21 >seq2 Length=170201513 Score = 136 bits (150), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| ||||| ||||||||||| || |||||||| || | | | | | |||| Sbjct 31802685 AGGACAAGATGCAGAGTTGACTCTTTTTGTATATTGTAATCAGCAAGACTACGGCAATCT 31802626 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| | |||||||||||| | | ||| ||||| || ||| Sbjct 31802625 TCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCT 31802566 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || ||| ||||||| |||||| |||| ||| |||||| || || || || Sbjct 31802565 TGGATCTTTGCTTTGACATTCTCTATTGTGTC---ACTTGGCTCTACCTCCAGGGTGATG 31802509 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || || || |||| |||||| Sbjct 31802508 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802474 Score = 129 bits (142), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || || ||||| ||||| || || || | | || | |||||| Sbjct 31610891 AGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGGGTGCGGCCATCT 31610832 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| | |||||||||||| | | ||| ||||| || ||| Sbjct 31610831 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCT 31610772 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || ||| ||||||| |||||| |||| ||| ||| ||||| | ||||| Sbjct 31610771 TGGATCTTTGCTTTGACATTCTCTATTGTGTC---ACTTGGCTCAACTTCCAAGGTAATG 31610715 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| || || || ||||| |||| ||||||| Sbjct 31610714 GTTTTGCCAGTCAGGGTTTTCACAAAGATCTGCATT 31610679 Score = 129 bits (142), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || || ||||| ||||||||||| || | | || | |||||| Sbjct 31611347 AGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 31611288 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| | |||||||||||| | | ||| ||||| || ||| Sbjct 31611287 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611228 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || ||| ||||||| |||||| |||| ||| |||||| || || || || Sbjct 31611227 TGGATCTTTGCTTTGACATTCTCTATTGTGTC---ACTTGGCTCTACCTCCAGGGTGATG 31611171 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || || |||| ||||||| Sbjct 31611170 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611135 Score = 129 bits (142), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || || ||||||||||||||||| || | | || | |||||| Sbjct 31611803 AGGACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGGCCATCT 31611744 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| | |||||||||||| | | ||| ||||| || ||| Sbjct 31611743 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611684 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || ||| ||||||| |||||| |||| ||| |||||| || | || || Sbjct 31611683 TGGATCTTTGCTTTGACATTCTCTATTGTGTC---ACTTGGCTCTACCTCCAAGGTGATG 31611627 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || || |||| ||||||| Sbjct 31611626 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611591 Score = 127 bits (140), Expect = 5e-24 Identities = 162/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || |||||||| || || || ||||| ||||||||||| || | || | |||||| Sbjct 31802913 AGTACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCACAAAGGGTGCGGCCATCT 31802854 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | |||||||||||| | | ||| ||||| || ||| Sbjct 31802853 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31802794 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || ||| ||||||| |||||| |||| ||| |||||| || |||||||| Sbjct 31802793 TGGATCTTTCCTTTGACATTCTCTATTGTGTC---ACTTGGCTCTACCTCCAGAGTAATG 31802737 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCC 152111 || ||||| || || || || || |||| ||||||| |||| Sbjct 31802736 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATTCCACCC 31802695 Score = 120 bits (132), Expect = 7e-22 Identities = 157/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || || ||||| ||||| || || || | | || | |||||| Sbjct 31611119 AGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGACCATCT 31611060 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| | |||||||||||| | | ||| ||||| || ||| Sbjct 31611059 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611000 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || ||| ||||||| |||||| |||| ||| |||||| || || || || Sbjct 31610999 TGGATCTTTGCTTTGACATTCTCTATTGTGTC---ACTTGGCTCTACCTCCAGGGTGATG 31610943 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || || |||| ||||||| Sbjct 31610942 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31610907 Score = 120 bits (132), Expect = 7e-22 Identities = 157/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || || ||||| ||||| || || || | | || | |||||| Sbjct 31611575 AGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGGCCATCT 31611516 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| | |||||||||||| | | ||| ||||| || ||| Sbjct 31611515 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31611456 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || ||| ||||||| |||||| |||| ||| |||||| || || || || Sbjct 31611455 TGGATCTTTGCTTTGACATTCTCTATTGTGTC---ACTTGGCTCTACCTCCAGGGTGATG 31611399 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || || |||| ||||||| Sbjct 31611398 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31611363 Score = 120 bits (132), Expect = 7e-22 Identities = 157/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| || || || || || ||||| ||||| || | || | |||||| Sbjct 31803141 AGGACAAGATGCAGGGTGGATTCCTTCTGGATATTGTAGTCACAAAGGGTGCGGCCATCT 31803082 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 ||||| || ||||| ||||| | |||||||||||| | | ||| ||||| || ||| Sbjct 31803081 TCTAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCTTTGTCT 31803022 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || ||| ||| ||| |||||| | |||| ||| |||||| || || || || Sbjct 31803021 TGGATCTTTGATTTAACATTCTCTATGGTGTC---ACTTGGCTCTACCTCCAGGGTGATG 31802965 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || || |||| ||||||| Sbjct 31802964 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31802929 Score = 116 bits (128), Expect = 9e-21 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| ||||| || ||||| ||||| || || || | || | |||||| Sbjct 31803369 AGGACAAGATGCAGAGTTGATTCTTTCTGGATATTATAGTCACAAAGGGTGCGGCCATCT 31803310 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| | |||||||||||| | | ||| ||||| || ||| Sbjct 31803309 TCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTGTCT 31803250 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || ||| ||| ||| |||| | | |||| ||| |||||| || || || || Sbjct 31803249 TGGATCTTTGATTTAACATTCTCAATGGTGTC---ACTTGGCTCTACCTCCAGGGTGATG 31803193 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || || || || |||| ||||||| Sbjct 31803192 GTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATT 31803157 >seq1 Length=194866763 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || || ||||| || ||||||||||| | | ||| | |||||| Sbjct 151539749 AGGACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCT 151539690 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | |||||||||||| | | || |||||||| ||| Sbjct 151539689 TCCAGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCT 151539630 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || |||||| || ||| |||| | |||| ||| ||| |||||||||||||| Sbjct 151539629 TGGATTTTTGCCTTTACATTCTCAATTGTGTC---ACTGGGCTCAACTTCAAGAGTAATG 151539573 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| || || | |||||| Sbjct 151539572 GTCTTCCCAGTCAGGGTCTTGACAAAAATCTGCAT 151539538 Score = 102 bits (112), Expect = 2e-16 Identities = 153/213 (72%), Gaps = 11/213 (5%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || ||||| || ||||||||||| | | || | |||||||| | Sbjct 151539516 CAAG-TGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAGAGTGTGCGGCCATCTTCCA 151539458 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||| ||||| | ||||||||||| | | || ||||| || ||||| Sbjct 151539457 GCTGCTTT--CCGGCAAAGATCAATCTCTGCTGGTCGGGAGGAATACCTTCTTTGTCTTG 151539400 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGT 152071 ||||||| ||| ||| | || | | |||| ||| || || ||||| || || || Sbjct 151539399 AATTTTTGCTTTTACATTTTCAATGGTGTC---ACTTGGTTCAACCTCAAGGGTTATTGT 151539343 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || |||||||| || | ||||| Sbjct 151539342 TTTACCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 Score = 91.5 bits (100), Expect = 3e-13 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || |||||||| |||||||| || | | ||| | |||||||| || || || Sbjct 151539278 GTGGATTCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCA 151539219 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || || | ||||||||||| | | || |||||||| ||||| |||||| || Sbjct 151539218 GCAAAAATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGGATTTTTGCCTTT 151539159 Query 152028 ACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 ||| |||| | | || ||| ||| || ||||| ||||| || || || || || Sbjct 151539158 ACATTCTCAATAGTATC---ACTTGGCTCAACCTCAAGGGTAATGGTCTTCCCAGTCAGG 151539102 Query 152085 GTCTTCACGAAGACCTGCAT 152104 |||||||| || | |||||| Sbjct 151539101 GTCTTCACAAATATCTGCAT 151539082 Score = 89.7 bits (98), Expect = 1e-12 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| ||||| || || ||||||||||| || || | ||| |||| ||||| Sbjct 151539066 GAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGATAAGGTTCGGCCATC 151539007 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||| || || ||||| | ||| || || || | | || ||||| || || Sbjct 151539006 TTCCAGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGAATGCCTTCTTTATC 151538947 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAAT 152068 || ||||| || ||| | || | |||| ||| ||| ||||| || || || Sbjct 151538946 CTGTATTTTAGCCTTCACATTTTCAATAGTGTC---ACTTGGCTCAACTTCTAGTGTGAT 151538890 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| || ||||| || | |||||| || Sbjct 151538889 GGTCTTCCCAGTGAGCGTTTTCACAAATATCTGCATGTT 151538851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153719948129562