Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 seq1 118 8e-22 >seq2 Length=170201513 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||||||| | | || || || || ||| || || ||||||||||| || Sbjct 31611366 CATTCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTC 31611307 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| |||||||||||||| | |||||| |||| Sbjct 31611306 AGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGG 31611247 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||| || || ||||| ||||| | ||| |||| ||||| | | Sbjct 31611246 AGGGATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCTATTGTGTCACTTGGCT 31611188 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| || || ||||| || || ||||| || || ||||| ||||| Sbjct 31611187 CTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31611136 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||||||| | | || || || || ||| || |||||||||||||| || | Sbjct 31611818 CCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAA 31611759 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| |||||||||||||| | |||||| |||| ||| Sbjct 31611758 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 31611699 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||| || || ||||| ||||| | ||| |||| ||||| | || || Sbjct 31611698 ATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCTATTGTGTCACTTGGCTCTAC 31611640 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || ||||| || || ||||| || || ||||| ||||| Sbjct 31611639 CTCCAAGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31611592 Score = 118 bits (130), Expect = 8e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||||||| | | || || || || ||| || || ||||| || || || Sbjct 31611138 CATTCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTC 31611079 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| |||||||||||||| | |||||| |||| Sbjct 31611078 AGAAAGTGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGG 31611019 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||| || || ||||| ||||| | ||| |||| ||||| | | Sbjct 31611018 AGGGATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCTATTGTGTCACTTGGCT 31610960 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| || || ||||| || || ||||| || || ||||| ||||| Sbjct 31610959 CTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31610908 Score = 118 bits (130), Expect = 8e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||||||| | | || || || || ||| || || ||||| || || || Sbjct 31611594 CATTCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTC 31611535 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| | || ||||||||||| |||||||||||||| | |||||| |||| Sbjct 31611534 AGAAAGTGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGG 31611475 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||| || || ||||| ||||| | ||| |||| ||||| | | Sbjct 31611474 AGGGATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCTATTGTGTCACTTGGCT 31611416 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| || || ||||| || || ||||| || || ||||| ||||| Sbjct 31611415 CTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31611364 Score = 114 bits (126), Expect = 9e-21 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||||||| | | || || || || ||| || || ||||||||||| || Sbjct 31802932 CATTCCACCTCTCAGACGAAGTACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTC 31802873 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| | || ||||||||||| || ||||||||||| | |||||| |||| Sbjct 31802872 ACAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGG 31802813 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||| || || ||||| | ||| | ||| |||| ||||| | | Sbjct 31802812 AGGGATACCTTCTTTGTCTTGGATCTT-TCCTTTGACATTCTCTATTGTGTCACTTGGCT 31802754 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| ||||| ||||| || || ||||| || || ||||| ||||| Sbjct 31802753 CTACCTCCAGAGTAATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802702 Score = 114 bits (126), Expect = 9e-21 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||||||| | | || || || || ||| ||||| ||||| ||||| || Sbjct 31803160 CATTCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCCTTCTGGATATTGTAGTC 31803101 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| | || || || ||||| |||||||||||||| | |||||| |||| Sbjct 31803100 ACAAAGGGTGCGGCCATCTTCTAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGG 31803041 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||| || || ||||| || || || ||| |||||||||| | | Sbjct 31803040 AGGGATACCTTCTTTGTCTTGGATCTT-TGATTTAACATTCTCTATGGTGTCACTTGGCT 31802982 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| || || ||||| || || ||||| || || ||||| ||||| Sbjct 31802981 CTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802930 Score = 111 bits (122), Expect = 1e-19 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || ||||| | | || || || || || ||| ||||| || |||||||| Sbjct 31802704 CATTCCACCCCTCAGACGAAGGACAAGATGCAGAGTTGACTCTTTTTGTATATTGTAATC 31802645 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || || || || |||||||| |||||||||||||| | |||||| |||| Sbjct 31802644 AGCAAGACTACGGCAATCTTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGG 31802585 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||| || || ||||| ||||| | ||| |||| ||||| | | Sbjct 31802584 GGGGATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCTATTGTGTCACTTGGCT 31802526 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 | ||||||| || || ||||| || || ||||| || || ||||| |||||||| Sbjct 31802525 CTACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCATGAT 31802471 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| |||||||| | | || || || || ||| || || ||||| || || || Sbjct 31610910 CATTCCACCTCTCAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTC 31610851 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| |||||||||||||| | |||||| |||| Sbjct 31610850 AGAAAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGG 31610791 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||| || || ||||| ||||| | ||| |||| ||||| | | Sbjct 31610790 GGGGATACCTTCTTTGTCTTGGATCTT-TGCTTTGACATTCTCTATTGTGTCACTTGGCT 31610732 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| ||||| || || || || ||||| ||||| ||||| ||||| Sbjct 31610731 CAACTTCCAAGGTAATGGTTTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 31610680 Score = 95.1 bits (104), Expect = 9e-15 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || ||||||||||| |||||||||||||| | |||||| |||| || | |||||| || Sbjct 31803312 TCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCTTTG 31803253 Query 44243 TCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301 || ||||| || || || ||| | |||||||| | || ||||||| || || Sbjct 31803252 TCTTGGATCTT-TGATTTAACATTCTCAATGGTGTCACTTGGCTCTACCTCCAGGGTGAT 31803194 Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || || ||||| || || ||||| ||||| Sbjct 31803193 GGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31803158 >seq1 Length=194866763 Score = 118 bits (130), Expect = 8e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||| || | | |||| ||| || ||| || || || ||||||||||| Sbjct 151539540 CATCCCACCTCTGAGACGAAGAACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATC 151539481 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | |||| ||| | || ||||||||||| |||||||||||||| | |||||| || | Sbjct 151539480 AGAGAGTGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGG 151539421 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGGATT 44285 ||| | ||||| |||| | | | || ||| || | || | |||||||| | || Sbjct 151539420 AGGAATACCTT-CTTTGTCTTGAATTTTTGCTTTTACATTTTCAATGGTGTCACTTGGTT 151539362 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || || || || || ||||||||||| || |||||||| Sbjct 151539361 CAACCTCAAGGGTTATTGTTTTACCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| || || || ||||||||||| | ||| ||| | || ||| Sbjct 151539746 ACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCTTCC 151539687 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || ||||||||||| | |||||| || | || | |||||||| || Sbjct 151539686 AGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGG 151539627 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || ||| | | ||| | || ||||| || || || || | ||||| ||||| Sbjct 151539626 AT-TTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGTCTT 151539568 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||| || || || ||||| Sbjct 151539567 CCCAGTCAGGGTCTTGACAAAAATCTGCAT 151539538 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || ||||||| | | |||| || || ||| |||||||||||||| || || Sbjct 151539084 CATCCCACCTCTCAAACGGAGAACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTC 151539025 Query 44167 GGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 | | ||| | || | || |||||||| || || ||||||||||| | || |||||| Sbjct 151539024 TGATAAGGTTCG-GC-CATCTTCCAGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCT 151538967 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | ||| | ||||| || ||| ||| || ||||| || | || ||||| | Sbjct 151538966 GGAGGAATGCCTTCTTTATCCTGTATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGC 151538907 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || | || || ||||| || ||||| || ||||| || || |||||| Sbjct 151538906 TCAACTTCTAGTGTGATGGTCTTCCCAGTGAGCGTTTTCACAAATATCTGCATG 151538853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359960469273174