Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 5e-15 seq8 89.7 7e-13 >seq4 Length=133473341 Score = 96.9 bits (106), Expect = 5e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 9709 ||||||||||| |||| | |||| |||||||| | ||| |||| ||| || || || Sbjct 109202430 CTTACCCCATGGCCCAATGCTTTGGTGAAGGCAGCCCCTTTGGCCATATCTGTTCTGAAG 109202371 Query 9710 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 9769 |||||||| ||||| ||||| ||||||| |||||||| | |||| ||| || || || Sbjct 109202370 AACTGGTGTGTGAAGTGTTGAGCAAAAAAAGCAAACATAACATTGGAGCCTTGAGGGTCA 109202311 Query 9770 GGA 9772 ||| Sbjct 109202310 GGA 109202308 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 || ||||| | |||| || |||||||||||| || | || | ||||| ||| Sbjct 109203111 GTTTGGAAAATGCGCTCATCGTCCCATTCTGGATGCTCGTTGGAAAGTATGTCGCAAACC 109203052 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 | ||||| ||||| | |||||| |||| ||||||||| ||||| || || ||||||||| Sbjct 109203051 CGATTGTGCTCCCTTAACCAGATGGTGGAGTACATCATCAGCCCTGGAACAAGGCCAAAA 109202992 Query 9376 GCCTCTTGACCGACAGC 9392 ||||||| || || || Sbjct 109202991 ACCTCTTGCCCAACGGC 109202975 >seq8 Length=117616046 Score = 89.7 bits (98), Expect = 7e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 8276 TCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGAC 8335 || || || || |||| || | || ||||| || || ||| ||| || || | Sbjct 15463735 TCGTCCGGCACGTGGAATGCAACAAAGGGACATTGTTTTACATTGAGACACACAAGCTTC 15463794 Query 8336 TGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTC 8395 ||||| ||||| |||| || || ||||| ||||| || ||||| ||||||||| Sbjct 15463795 TGAATCGTTGCAGTCTTTACAATATTAAACCCAGTTTCTCCCCCAAAGGTACTGGGCTTC 15463854 Query 8396 CAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCC 8455 ||||| |||| ||||| || |||| ||||||| ||||| || || || || ||||| Sbjct 15463855 CAGTATTCCGGAGAGCAAATTGGGTTCCCCATGAGTCCTTTAAGAGAAAATGGTGCCCCT 15463914 Query 8456 AACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCA 8504 | || | || || || || || || | || ||| || ||||||| Sbjct 15463915 ATTTCCACCATACTTTCTCCAAATATTGAATTTGGATTGGATTTTTCCA 15463963 Score = 86.0 bits (94), Expect = 9e-12 Identities = 98/130 (75%), Gaps = 4/130 (3%) Strand=Plus/Plus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 ||||| ||||| || | ||||||| |||| || | || || |||| || ||| | | Sbjct 15478312 CTTACACCATGACCGAATCCTTTAATGAAACCCCGTCCCATCCTGCCATAT--GTCTTGA 15478369 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 ||||||| ||||||||||| ||| |||| |||||||||| | ||| ||||| || || | Sbjct 15478370 AAAACTGATGCGTGAAATGCTGGGCAAAGAAGGCAAACAGGAGGTTTGTGCCTTGCGGGT 15478429 Query 9768 CGGGAGTGAA 9777 | || |||| Sbjct 15478430 CTGGGATGAA 15478439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716815668330880