Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 154 4e-32 seq1 152 1e-31 >seq2 Length=170201513 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| || || || || || |||||||| ||||| || || || Sbjct 31610911 CAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGA--GCCAAGTG 31610968 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| |||||| |||||| || ||||||||||| |||||||| ||||||| Sbjct 31610969 ACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAGC 31611028 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| || ||||| |||||||| | || ||| | || ||||| Sbjct 31611029 AGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACACTTTCTGACTATAATA 31611088 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||||||||| Sbjct 31611089 TCCAGAAAGAATCCACCCTGCATCTTGT 31611116 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| || || || || || |||||||| ||||| || || || Sbjct 31611139 CAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGA--GCCAAGTG 31611196 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| |||||| |||||| || ||||||||||| |||||||| ||||||| Sbjct 31611197 ACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAGC 31611256 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| || ||||| |||||||| | || ||| | || || ||| Sbjct 31611257 AGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAACA 31611316 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||||||||| Sbjct 31611317 TCCAGAAAGAATCCACCCTGCATCTTGT 31611344 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| || || || || || |||||||| ||||| || || || Sbjct 31611367 CAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGA--GCCAAGTG 31611424 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| |||||| |||||| || ||||||||||| |||||||| ||||||| Sbjct 31611425 ACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAGC 31611484 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| || ||||| |||||||| | || ||| | || ||||| Sbjct 31611485 AGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACACTTTCTGACTATAATA 31611544 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||||||||| Sbjct 31611545 TCCAGAAAGAATCCACCCTGCATCTTGT 31611572 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| || || || || || |||||| | ||||| || || || Sbjct 31611595 CAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTAGA--GCCAAGTG 31611652 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| |||||| |||||| || ||||||||||| |||||||| ||||||| Sbjct 31611653 ACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAGC 31611712 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| || ||||| |||||||| | || ||| | || || ||| Sbjct 31611713 AGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTCTGACTACAACA 31611772 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||||| || ||||||||||| Sbjct 31611773 TCCAAAAAGAATCCACCCTGCATCTTGT 31611800 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| || || || || || |||||||| ||||| || || || Sbjct 31802477 CAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGA--GCCAAGTG 31802534 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| |||||| |||||| || ||||||||||| ||||| || ||||||| Sbjct 31802535 ACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCAGC 31802594 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| || ||||| |||||| | | | |||||| ||||| || Sbjct 31802595 AGAGGTTGATCTTTGCCGGCAAGCAGCTTGAAGATTGCCGTAGTCTTGCTGATTACAATA 31802654 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | |||||||| ||||| ||||||||||| Sbjct 31802655 TACAAAAAGAGTCAACTCTGCATCTTGT 31802682 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| || || || || || |||||||| ||||| || || || Sbjct 31803161 CAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGA--GCCAAGTG 31803218 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || ||| |||||| || ||||||||||| ||||| || ||||||| Sbjct 31803219 ACACCATTGAGAATGTTAAATCAAAGATCCAAGACAAAGAAGGTATCCCCCCAGACCAGC 31803278 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| || ||||| |||||||| | || ||| || ||||| Sbjct 31803279 AGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTTTGTGACTATAATA 31803338 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||||||||| ||||||||||| Sbjct 31803339 TCCAGAAAGAATCAACTCTGCATCTTGT 31803366 Score = 145 bits (160), Expect = 2e-29 Identities = 167/222 (75%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| | ||||| | || || |||||||| || || || ||||| || ||| | || | Sbjct 31610672 AGGTCAGAATGC---AGATCTTTGTGAAAACCCTGACTGGCAAAACCATTACCTTGGAAG 31610728 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 | || || || |||| || ||||| |||||| |||||| || ||||||||||| || Sbjct 31610729 TTGA--GCCAAGTGACACAATAGAGAATGTCAAAGCAAAGATCCAAGACAAAGAAGGTAT 31610786 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | | ||||| ||||| || ||||| |||||||| | || || Sbjct 31610787 CCCCCCAGACCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCT 31610846 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | || ||||| |||| |||||||| || ||||||||||| Sbjct 31610847 TTCTGACTATAATATCCAGAAAGAATCCACCCTGCATCTTGT 31610888 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| || || || || || || || || ||||| || || || Sbjct 31802705 CAGATCTTTGTAAAAACCCTGACTGGCAAGACCATTACTCTGGAGGTAGA--GCCAAGTG 31802762 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| |||||| |||||| || ||||||||||| |||||||| ||||||| Sbjct 31802763 ACACAATAGAGAATGTCAAAGGAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAGC 31802822 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || || ||||| |||||||| | || ||| || || ||| Sbjct 31802823 AGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTTTGTGACTACAACA 31802882 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||||||||| Sbjct 31802883 TCCAGAAAGAATCCACCCTGCATCTTGT 31802910 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || ||||| || || || || || |||||||| ||||| || || || Sbjct 31802933 CAGATCTTTGTAAAAACCCTGACTGGCAAGACCATCACCCTGGAGGTAGA--GCCAAGTG 31802990 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || ||| |||||| || ||||||||||| |||||||| ||||||| Sbjct 31802991 ACACCATAGAGAATGTTAAATCAAAGATCCAAGACAAAGAAGGTATCCCTCCAGACCAGC 31803050 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| || || || |||||||| | || ||| || || || Sbjct 31803051 AGAGGTTGATCTTTGCCGGCAAGCAACTAGAAGATGGCCGCACCCTTTGTGACTACAATA 31803110 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || ||||||||||| Sbjct 31803111 TCCAGAAGGAATCCACCCTGCATCTTGT 31803138 >seq1 Length=194866763 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || || || || ||||| || ||||| ||||| ||| ||| Sbjct 151539313 CAAATATTTGTGAAGACCCTGACTGGTAAAACAATAACCCTTGAGGTTGAACCAAGTGAC 151539372 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| ||| ||||| ||||||||||| || ||||| |||||||| Sbjct 151539373 ACCATTGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGTATTCCTCCCGACCAGCAG 151539432 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| |||||||| ||||| |||||||| | || || | ||||| ||| | Sbjct 151539433 AGATTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACACTCTCTGATTACAACATT 151539492 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| |||||||| | ||| | | |||||| Sbjct 151539493 CAGAAAGAATCCACACTGCACTTGGTTCTTCGTCTCAGA 151539531 Score = 105 bits (116), Expect = 2e-17 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || || ||||| ||||| || || || Sbjct 151539085 CAGATATTTGTGAAGACCCTGACTGGGAAGACCATTACCCTTGAGGTTGA--GCCAAGTG 151539142 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || || ||| || || ||||| ||||| || || || ||||||| Sbjct 151539143 ATACTATTGAGAATGTAAAGGCAAAAATCCAAGACAAGGAAGGCATTCCCCCTGACCAGC 151539202 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | || || || || || ||||| |||||||| | |||||| | || || ||| Sbjct 151539203 AGAGATTGATTTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAACA 151539262 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | ||||||||||| || |||| | ||| | | |||||| Sbjct 151539263 TTCAAAAAGAATCCACCTTGCACTTAGTTCTTCGTCTCAGA 151539303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203625985617468