Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Xenopus_20tropicalis_20[refseq_20GCF_5F000004195.3_202016-07-13] 6,822 sequences; 1,440,398,454 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq2 104 2e-17 >seq1 Length=194866763 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| || ||||||||||| || || ||||| ||||| | || || Sbjct 151539746 ACCAGGTGCAGGGTGGATTCTTTCTGAATGTTGTAATCAGAGAGAGTGCGGCCATCTTCC 151539687 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || |||| | ||| ||||| | ||||| || ||||| || | Sbjct 151539686 AGCTGCTTGCCTGCAAAGATCAACCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGG 151539627 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 |||||| ||| | | | ||||| || | ||| || || | || || || || Sbjct 151539626 ATTTTTGCCTTTACATTCTCAATTGTGTCACTGGGCTCAACTTCAAGAGTAATGGTCTTC 151539567 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| || ||||||||||| Sbjct 151539566 CCAGTCAGGGTCTTGACAAAAATCTGCAT 151539538 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | |||| ||||| ||| || ||||||||||| || || ||||| ||||| Sbjct 151539527 AGACGAAGAACCAAGTGCAGTGTGGATTCTTTCTGAATGTTGTAATCAGAGAGTGTGCGG 151539468 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| ||||| || |||| | ||| ||||| | |||| | || Sbjct 151539467 CCATCTTCCAGCTGCTTTCCGGCAAAGATCAATCTCTGCTGGTCGGGAGGAATACCTTCT 151539408 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | ||| ||||||||| || | | ||||| || | || ||||| | || Sbjct 151539407 TTGT-CTTGAATTTTTGCTTTTACATTTTCAATGGTGTCACTTGGTTCAACCTCAAGGGT 151539349 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| |||||||| ||||| ||||| || || || ||||| Sbjct 151539348 TATTGTTTTACCAGTCAGGGTCTTCACAAATATTTGCAT 151539310 Score = 102 bits (112), Expect = 8e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || || |||||||| ||||| || || ||||| | || || ||||||||||| || || Sbjct 151539272 TCTTTTTGAATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAA 151539213 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 |||| | ||| ||||| | ||||| || |||||||| ||||||| ||| | | Sbjct 151539212 ATCAATCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCTTGGATTTTTGCCTTTACATTC 151539153 Query 41792 GACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | ||| || || | ||| ||||| | || || || || || ||||| ||||| || Sbjct 151539152 TCAATAGTATCACTTGGCTCAACCTCAAGGGTAATGGTCTTCCCAGTCAGGGTCTTCACA 151539093 Query 41852 AAAATCTGCAT 41862 || |||||||| Sbjct 151539092 AATATCTGCAT 151539082 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| |||||| ||| ||||| || ||||||||||| || | ||| || | || || Sbjct 151539062 ACCAAATGCAGAGTGGATTCCTTTTGGATGTTATAGTCTGATAAGGTTCGGCCATCTTCC 151539003 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| ||||| || || |||| | ||||| || | |||| || || || ||| Sbjct 151539002 AGCTGTTTGCCAGCAAAGATCAACCTTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGT 151538943 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 ||||| ||||| | |||||| || | ||| || || | || || || || Sbjct 151538942 ATTTTAGCCTTCACATTTTCAATAGTGTCACTTGGCTCAACTTCTAGTGTGATGGTCTTC 151538883 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || ||||| || || || ||||||||||| Sbjct 151538882 CCAGTGAGCGTTTTCACAAATATCTGCATGTT 151538851 >seq2 Length=170201513 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || |||||||| ||| || ||||| || |||||||| || |||||||| Sbjct 31610897 AGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGGGTGCGG 31610838 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || |||| | ||| ||||| | ||| | | || Sbjct 31610837 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCT 31610778 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | || | ||||||| || | | ||||| || | ||| || |||| || Sbjct 31610777 TTGT-CTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCAACTTCCAAGGT 31610719 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || ||||| || || || || |||||||| Sbjct 31610718 AATGGTTTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 31610680 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || |||||||| ||| || ||||| ||||| ||||| || |||||||| Sbjct 31611353 AGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGG 31611294 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || |||| | ||| ||||| | || | | || Sbjct 31611293 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCT 31611234 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | || | ||||||| || | | ||||| || | ||| ||||||| || Sbjct 31611233 TTGT-CTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGT 31611175 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| || ||||| || |||||||| Sbjct 31611174 GATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31611136 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || |||||||| ||| || ||||| || |||||||| || || ||||| Sbjct 31611125 AGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGA 31611066 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || |||| | ||| ||||| | || | | || Sbjct 31611065 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCT 31611006 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | || | ||||||| || | | ||||| || | ||| ||||||| || Sbjct 31611005 TTGT-CTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGT 31610947 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| || ||||| || |||||||| Sbjct 31610946 GATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31610908 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || |||||||| ||| || ||||| || |||||||| || || ||||| Sbjct 31611581 AGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATATTATAGTCAGAAAGTGTGCGG 31611522 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || |||| | ||| ||||| | || | | || Sbjct 31611521 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCT 31611462 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | || | ||||||| || | | ||||| || | ||| ||||||| || Sbjct 31611461 TTGT-CTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGGGT 31611403 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| || ||||| || |||||||| Sbjct 31611402 GATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31611364 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || |||||||| ||| || || || ||||| ||||| || |||||||| Sbjct 31611809 AGACGAAGGACAAGATGCAGGGTGGATTCTTTTTGGATGTTGTAGTCAGAAAGGGTGCGG 31611750 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || |||| | ||| ||||| | || | | || Sbjct 31611749 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCT 31611690 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | || | ||||||| || | | ||||| || | ||| ||||||| || Sbjct 31611689 TTGT-CTTGGATCTTTGCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAAGGT 31611631 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| || ||||| || |||||||| Sbjct 31611630 GATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31611592 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || |||||||| || || ||||| || |||||||| | |||||||| Sbjct 31803375 AGACGAAGGACAAGATGCAGAGTTGATTCTTTCTGGATATTATAGTCACAAAGGGTGCGG 31803316 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || |||| | ||| ||||| | ||| | | || Sbjct 31803315 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATACCTTCT 31803256 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | || | |||| || ||| | | ||||| || | ||| ||||||| || Sbjct 31803255 TTGT-CTTGGATCTTTGATTTAACATTCTCAATGGTGTCACTTGGCTCTACCTCCAGGGT 31803197 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| || ||||| || |||||||| Sbjct 31803196 GATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31803158 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || |||||||| ||| |||||||| || || ||||| | |||||||| Sbjct 31803147 AGACGAAGGACAAGATGCAGGGTGGATTCCTTCTGGATATTGTAGTCACAAAGGGTGCGG 31803088 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || || ||||||||||| || |||| | ||| ||||| | || | | || Sbjct 31803087 CCATCTTCTAGTTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCT 31803028 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||| | || | |||| || ||| | | ||||| || | ||| ||||||| || Sbjct 31803027 TTGT-CTTGGATCTTTGATTTAACATTCTCTATGGTGTCACTTGGCTCTACCTCCAGGGT 31802969 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| || ||||| || |||||||| Sbjct 31802968 GATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802930 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || |||||||| ||| || ||||| ||||| ||||| | |||||||| Sbjct 31802919 AGACGAAGTACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCACAAAGGGTGCGG 31802860 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || |||| | ||| ||||| | || | | || Sbjct 31802859 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGGATACCTTCT 31802800 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| ||| || | | | ||||| || | ||| ||||||| || Sbjct 31802799 TTGTCTTGGATCTTTCCTTTGACATTCTCTATTGTGTCACTTGGCTCTACCTCCAGAGTA 31802740 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| || ||||| || |||||||| Sbjct 31802739 ATGGTCTTGCCAGTCAGGGTTTTTACAAAGATCTGCAT 31802702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462264577026400