Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq257 91.5 3e-13
seq213 91.5 3e-13
seq492 89.7 1e-12
seq42 89.7 1e-12
>seq257
Length=3965956
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 2657529 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2657470
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 2657469 CCCCACGTTGGGC 2657457
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 2690658 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2690717
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 2690718 CCCCACGTTGGGC 2690730
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 2663504 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2663563
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 2663564 CCCACGTTGGGC 2663575
Score = 87.8 bits (96), Expect = 4e-12
Identities = 62/71 (87%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770
|||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||||
Sbjct 2727637 CCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCC 2727696
Query 165771 CCACGATGGGC 165781
||||| |||||
Sbjct 2727697 CCACGTTGGGC 2727707
>seq213
Length=5512515
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768
|||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 2925967 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2925908
Query 165769 CCCCACGATGGGC 165781
||||||| |||||
Sbjct 2925907 CCCCACGTTGGGC 2925895
>seq492
Length=966749
Score = 89.7 bits (98), Expect = 1e-12
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767
|| |||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct 280944 TTACCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 281003
Query 165768 GCCCCACGATGGGC 165781
|||||||| |||||
Sbjct 281004 GCCCCACGTTGGGC 281017
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 302835 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 302776
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 302775 CCCACGTTGGGC 302764
>seq42
Length=21960898
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 5865267 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 5865326
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 5865327 CCCACGTTGGGC 5865338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057546155915000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |