Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1663 192 6e-44 seq4595 170 2e-37 seq131 102 8e-17 seq58 102 8e-17 seq1 84.2 2e-11 >seq1663 Length=17039 Score = 192 bits (212), Expect = 6e-44 Identities = 476/715 (67%), Gaps = 27/715 (4%) Strand=Plus/Minus Query 16703 AAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAA 16762 |||||||| || || | || || | |||||||||||| ||||| ||||| || | Sbjct 3153 AAGTTAGTCTTCCCTTTCAGTGAAACATTCTCCATGAAGTCAAATGGATTTTCTACTTTA 3094 Query 16763 AATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGG 16822 || || ||| | |||||||| |||| ||| || || || ||||| || || | Sbjct 3093 AACATCTTATTAAAACCCAGTTCCAGCATTACTCTGTCTGCCACGAATTCAATGTACCGC 3034 Query 16823 CACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGT 16882 |||||| ||| |||||||| ||| | || || | || | ||| || || Sbjct 3033 TTCATTAAAGTGCAATTCATTCCGATATGCTTCACAGGCAAGGCCT-CGTAAAGAACTTC 2975 Query 16883 TGCTCTATAACAACCGCTTCCTTAATAATACTAGC---AACTCGTTCCTCGGACGGTGTA 16939 || ||||| |||| | | |||||||| | | |||| | ||| || ||| | Sbjct 2974 TGTTCTATCCCAACAG---CATTAATAATTATTTCTTTTACTCTCTGCTCCGAAGGTTTG 2918 Query 16940 TGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTG 16999 ||| || ||||| ||| | ||||| || || || || || || ||||| |||||||| Sbjct 2917 TGTAGCAGGTGTTTGAACGTTAGACAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTA 2858 Query 17000 ATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATC 17059 |||||||| || |||||||||| || ||||| |||| | |||| | ||| | || Sbjct 2857 ATAAGTTCATTGGAAAATGTCAGACCAGGCATTAGTCCTGGCTTCTCAAGCCAGATTACT 2798 Query 17060 GCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCG 17119 | || || || |||||||||| || || || || | |||||| | || Sbjct 2797 GATGCAAAAGAACCAGAAAAGACGATTCCTTCCACTGCTGCAAAGG----TA-------- 2750 Query 17120 GCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATG 17179 | || || || ||||||| | ||| || | |||| || || || | ||| | Sbjct 2749 -CATAGGTAGCTTCTTTGTCCCTAATTCAGCACAAGGCCCAATCTGCCTTCTTCTTCACA 2691 Query 17180 CAATCCATCGTTTCTATGGCCTTAA--ATAATTTCTCTTTTTCCTGTAG-GTCGATTATA 17236 ||| ||| ||| ||||| |||| | || ||| | |||||| ||| || | || Sbjct 2690 CAAGGAATCTTTTAAATGGCATTAAAGAGAAATTCCC--TTTCCT-TAGAATCTTTAATG 2634 Query 17237 TACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAAT 17296 || || || || || || || |||||||| || |||||||| |||||||| || || || Sbjct 2633 TAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAG 2574 Query 17297 CCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTT 17356 || || || || |||| ||| | ||||| |||| | ||||| ||| | | ||| Sbjct 2573 CCATAGAAACAGCGGG-TTCTGTAATTTGGACTTTTTGGCTAAATCGCTCCACCAACTTT 2515 Query 17357 TCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411 || || || ||| | || || || || || ||||||| || ||| ||||||| Sbjct 2514 TCATTTACTATGGCATCACTTGCCGCTAAGAACGCCAGTACATGTGATATGAAAT 2460 >seq4595 Length=7281 Score = 170 bits (188), Expect = 2e-37 Identities = 396/589 (67%), Gaps = 10/589 (2%) Strand=Plus/Minus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 || ||||| |||| || || || | || || || || ||||| ||||||| |||||| Sbjct 6625 AGGTGTTTGAACACTAGGCAAGCAATGTCACAGTGCAAACCCTCACCTCTGCTAATAAGT 6566 Query 17006 TCGTTAG-AAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGC 17064 || || | ||||||||| || ||||| | ||| |||||| | ||| ||||| | || Sbjct 6565 TCATTTGGAAAATGTCAGACCAGGCATAAGTTCTCATTTCTTGAGCCAGAATATTGATGC 6506 Query 17065 GAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTA 17124 || || ||||||||||| || || || || | |||||| || | | | || | || Sbjct 6505 AAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACAACACACTCCCCATA 6446 Query 17125 CGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC 17184 || ||||||| | |||||| | ||||| || || || | ||| | ||| Sbjct 6445 GGTAATTTCTTTGTCTCCAATCCAGCGCAAGACCCAATCTGCCTTCTTCTTCACACAAGG 6386 Query 17185 CATCGTTTCTATGGCCTTAAATA--ATTTCTCTTTTTCCTGTAGG-TCGATTATATACGT 17241 |||| |||| ||||| ||||| | | ||| |||| ||| ||| || | | || || Sbjct 6385 CATCATTTCAATGGCATTAAAGAGAAATTCCCTTT--CCT-TAGAATCTTTCAAATCAGT 6329 Query 17242 ATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA 17301 || || || || || |||||||| || |||||||| |||||| | || || || || || Sbjct 6328 GTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGACAATTTGGAAGCCATA 6269 Query 17302 AAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTT 17361 || || | |||||| | ||||||||||| | ||| | ||| | | |||| || Sbjct 6268 GAAACAGCTGGCTTCTGTAATTTGAACTTCTTGGCTAAATTGCTCCACGAAGTTTTTATT 6209 Query 17362 CACGATGCCGTCGCTCGCGGCGAAAAACGC--CAATATATGCTTAATGAAATATTTTTCG 17419 ||| ||||| || || || || || || || || || ||| |||| ||| | | Sbjct 6208 CACTATGCCATCACTTGCTGC-AAGAATGCCACAGTACATGTGATGTGAAGTATCTCTTC 6150 Query 17420 TCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTC 17479 || || || ||||| || | || | | | |||||| | || | | || Sbjct 6149 TCAGGCTCCAGGGTTTCCCAGTGCTGAATGTCCGTAAAAAGATCCACCTTCTCAGCGATC 6090 Query 17480 CAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATT 17528 ||||| |||| | || || || ||||| | ||||||||||| ||||| Sbjct 6089 CAAAAGGAAGCCTCAGCTTTCTTGTACATCTGCCAAATATCATGGTATT 6041 >seq131 Length=9795181 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| ||||||||||||| || ||||| |||||| |||| Sbjct 9778492 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTCAGACCAGGCATTAGTCCTCGCTTCT 9778551 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || || || || | |||||| | Sbjct 9778552 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGG 9778611 Query 17106 C 17106 | Sbjct 9778612 C 9778612 >seq58 Length=18876681 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| ||||||||||||| || ||||| |||||| |||| Sbjct 18847693 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTCAGACCAGGCATTAGTCCTCGCTTCT 18847634 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || || || || | |||||| | Sbjct 18847633 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGG 18847574 Query 17106 C 17106 | Sbjct 18847573 C 18847573 >seq1 Length=63721086 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||| |||||||| ||||| || | || ||||| |||| |||| Sbjct 1747005 CCTCATCTCTGCTGATGAGTTCGTTGGAAAAAGTAAGTCCCGGCATAAGACCTCTCTTCT 1747064 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 ||| ||| ||||| || || || || ||||| ||||| || || || || | ||||| | Sbjct 1747065 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAGG 1747124 Query 17106 C 17106 | Sbjct 1747125 C 1747125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517412978940000