Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq1663 192 6e-44
seq4595 170 2e-37
seq131 102 8e-17
seq58 102 8e-17
seq1 84.2 2e-11
>seq1663
Length=17039
Score = 192 bits (212), Expect = 6e-44
Identities = 476/715 (67%), Gaps = 27/715 (4%)
Strand=Plus/Minus
Query 16703 AAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAA 16762
|||||||| || || | || || | |||||||||||| ||||| ||||| || |
Sbjct 3153 AAGTTAGTCTTCCCTTTCAGTGAAACATTCTCCATGAAGTCAAATGGATTTTCTACTTTA 3094
Query 16763 AATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGG 16822
|| || ||| | |||||||| |||| ||| || || || ||||| || || |
Sbjct 3093 AACATCTTATTAAAACCCAGTTCCAGCATTACTCTGTCTGCCACGAATTCAATGTACCGC 3034
Query 16823 CACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGT 16882
|||||| ||| |||||||| ||| | || || | || | ||| || ||
Sbjct 3033 TTCATTAAAGTGCAATTCATTCCGATATGCTTCACAGGCAAGGCCT-CGTAAAGAACTTC 2975
Query 16883 TGCTCTATAACAACCGCTTCCTTAATAATACTAGC---AACTCGTTCCTCGGACGGTGTA 16939
|| ||||| |||| | | |||||||| | | |||| | ||| || ||| |
Sbjct 2974 TGTTCTATCCCAACAG---CATTAATAATTATTTCTTTTACTCTCTGCTCCGAAGGTTTG 2918
Query 16940 TGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTG 16999
||| || ||||| ||| | ||||| || || || || || || ||||| ||||||||
Sbjct 2917 TGTAGCAGGTGTTTGAACGTTAGACAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTA 2858
Query 17000 ATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATC 17059
|||||||| || |||||||||| || ||||| |||| | |||| | ||| | ||
Sbjct 2857 ATAAGTTCATTGGAAAATGTCAGACCAGGCATTAGTCCTGGCTTCTCAAGCCAGATTACT 2798
Query 17060 GCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCG 17119
| || || || |||||||||| || || || || | |||||| | ||
Sbjct 2797 GATGCAAAAGAACCAGAAAAGACGATTCCTTCCACTGCTGCAAAGG----TA-------- 2750
Query 17120 GCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATG 17179
| || || || ||||||| | ||| || | |||| || || || | ||| |
Sbjct 2749 -CATAGGTAGCTTCTTTGTCCCTAATTCAGCACAAGGCCCAATCTGCCTTCTTCTTCACA 2691
Query 17180 CAATCCATCGTTTCTATGGCCTTAA--ATAATTTCTCTTTTTCCTGTAG-GTCGATTATA 17236
||| ||| ||| ||||| |||| | || ||| | |||||| ||| || | ||
Sbjct 2690 CAAGGAATCTTTTAAATGGCATTAAAGAGAAATTCCC--TTTCCT-TAGAATCTTTAATG 2634
Query 17237 TACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAAT 17296
|| || || || || || || |||||||| || |||||||| |||||||| || || ||
Sbjct 2633 TAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAG 2574
Query 17297 CCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTT 17356
|| || || || |||| ||| | ||||| |||| | ||||| ||| | | |||
Sbjct 2573 CCATAGAAACAGCGGG-TTCTGTAATTTGGACTTTTTGGCTAAATCGCTCCACCAACTTT 2515
Query 17357 TCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAAT 17411
|| || || ||| | || || || || || ||||||| || ||| |||||||
Sbjct 2514 TCATTTACTATGGCATCACTTGCCGCTAAGAACGCCAGTACATGTGATATGAAAT 2460
>seq4595
Length=7281
Score = 170 bits (188), Expect = 2e-37
Identities = 396/589 (67%), Gaps = 10/589 (2%)
Strand=Plus/Minus
Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005
|| ||||| |||| || || || | || || || || ||||| ||||||| ||||||
Sbjct 6625 AGGTGTTTGAACACTAGGCAAGCAATGTCACAGTGCAAACCCTCACCTCTGCTAATAAGT 6566
Query 17006 TCGTTAG-AAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGC 17064
|| || | ||||||||| || ||||| | ||| |||||| | ||| ||||| | ||
Sbjct 6565 TCATTTGGAAAATGTCAGACCAGGCATAAGTTCTCATTTCTTGAGCCAGAATATTGATGC 6506
Query 17065 GAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTA 17124
|| || ||||||||||| || || || || | |||||| || | | | || | ||
Sbjct 6505 AAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTACAACACACTCCCCATA 6446
Query 17125 CGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATC 17184
|| ||||||| | |||||| | ||||| || || || | ||| | |||
Sbjct 6445 GGTAATTTCTTTGTCTCCAATCCAGCGCAAGACCCAATCTGCCTTCTTCTTCACACAAGG 6386
Query 17185 CATCGTTTCTATGGCCTTAAATA--ATTTCTCTTTTTCCTGTAGG-TCGATTATATACGT 17241
|||| |||| ||||| ||||| | | ||| |||| ||| ||| || | | || ||
Sbjct 6385 CATCATTTCAATGGCATTAAAGAGAAATTCCCTTT--CCT-TAGAATCTTTCAAATCAGT 6329
Query 17242 ATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTA 17301
|| || || || || |||||||| || |||||||| |||||| | || || || || ||
Sbjct 6328 GTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGACAATTTGGAAGCCATA 6269
Query 17302 AAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTT 17361
|| || | |||||| | ||||||||||| | ||| | ||| | | |||| ||
Sbjct 6268 GAAACAGCTGGCTTCTGTAATTTGAACTTCTTGGCTAAATTGCTCCACGAAGTTTTTATT 6209
Query 17362 CACGATGCCGTCGCTCGCGGCGAAAAACGC--CAATATATGCTTAATGAAATATTTTTCG 17419
||| ||||| || || || || || || || || || ||| |||| ||| | |
Sbjct 6208 CACTATGCCATCACTTGCTGC-AAGAATGCCACAGTACATGTGATGTGAAGTATCTCTTC 6150
Query 17420 TCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTC 17479
|| || || ||||| || | || | | | |||||| | || | | ||
Sbjct 6149 TCAGGCTCCAGGGTTTCCCAGTGCTGAATGTCCGTAAAAAGATCCACCTTCTCAGCGATC 6090
Query 17480 CAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATT 17528
||||| |||| | || || || ||||| | ||||||||||| |||||
Sbjct 6089 CAAAAGGAAGCCTCAGCTTTCTTGTACATCTGCCAAATATCATGGTATT 6041
>seq131
Length=9795181
Score = 102 bits (112), Expect = 8e-17
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||| |||||||| |||||||| ||||||||||||| || ||||| |||||| ||||
Sbjct 9778492 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTCAGACCAGGCATTAGTCCTCGCTTCT 9778551
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
| | ||| ||||| | || || || ||||||||||| || || || || | |||||| |
Sbjct 9778552 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGG 9778611
Query 17106 C 17106
|
Sbjct 9778612 C 9778612
>seq58
Length=18876681
Score = 102 bits (112), Expect = 8e-17
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||| |||||||| |||||||| ||||||||||||| || ||||| |||||| ||||
Sbjct 18847693 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTCAGACCAGGCATTAGTCCTCGCTTCT 18847634
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
| | ||| ||||| | || || || ||||||||||| || || || || | |||||| |
Sbjct 18847633 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGG 18847574
Query 17106 C 17106
|
Sbjct 18847573 C 18847573
>seq1
Length=63721086
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||| ||||||||||| |||||||| ||||| || | || ||||| |||| ||||
Sbjct 1747005 CCTCATCTCTGCTGATGAGTTCGTTGGAAAAAGTAAGTCCCGGCATAAGACCTCTCTTCT 1747064
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
||| ||| ||||| || || || || ||||| ||||| || || || || | ||||| |
Sbjct 1747065 TTAGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAGG 1747124
Query 17106 C 17106
|
Sbjct 1747125 C 1747125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517412978940000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |