Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq205 232 7e-56 seq260 203 3e-47 seq1 102 8e-17 seq27 87.8 2e-12 >seq205 Length=6054944 Score = 232 bits (256), Expect = 7e-56 Identities = 582/882 (66%), Gaps = 17/882 (2%) Strand=Plus/Plus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || |||||||| || || ||||| || | || || |||||||| | ||||| || | Sbjct 2460979 ACTCCCATTCTCTGATATTCACTTACTCTCTTCTCAGAGAAGTTACTCTTTCCTTCCAGT 2461038 Query 15962 GATATATTTTCCATAAAATCAAAGGGA-TTAGTAGCTGAAAATATCTTAGAGTACCCCAG 16020 || ||||| ||||| || ||||| ||| || || || || | | | | ||||| Sbjct 2461039 GAAATATTCTCCATGAAGTCAAATGGACTTTCTA-CTTTGAACACCCTGTTAAAACCCAG 2461097 Query 16021 TTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAAT 16080 |||| | | || ||| ||||| ||||| || || | |||||| |||||| || Sbjct 2461098 TTCCATCATTAGTCTGTCTGCCTTGAATTCAATGTACTACTGCATTAAAGTGCAATTCAT 2461157 Query 16081 TCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTC 16140 ||| ||||| || || | || | || | || | ||||||||| ||| || | Sbjct 2461158 TCCGATAAGCTTCACAGGCAAGGCCTCAGTAAGTAACTCCTGTTCTATCCTAACAGCATT 2461217 Query 16141 TTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAG 16200 |||| || || | ||| || | ||| | || |||||||| ||| |||| Sbjct 2461218 AATAATTATTTCTTTTACTCTCTGCTCTTAAGGTTTTTGTAGAAGGTGTTTGAACGTTAG 2461277 Query 16201 ACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAA 16260 || || ||||| || || | || || |||||||||| |||||| |||||||| || | Sbjct 2461278 GCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTGAGAAGTTCATTGGAAAATGTCAG 2461337 Query 16261 CCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAA 16320 || ||| | || | ||||| | |||||| || | |||| || | |||||||| Sbjct 2461338 ACCAGGCTTCTTGC-----TTCTTGAGCCAGAACATTGATACAAAAGAATCAGAAAAGAA 2461392 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380 | || || || | |||||| || | | | || | || ||||| ||||| | | Sbjct 2461393 GACTCCTTCCACTGTTGCAAAGGCTACAACATGCTCTCCATAGGTAGCTTCTTTGTCCCC 2461452 Query 16381 AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT 16440 |||||| | | |||| || || || | || |||||| |||||||| ||| | || Sbjct 2461453 AATCCAATGCAAGGCCCAATCTGCCTTCTTCTTCATACAAGGTATCGTTTCAATGACATT 2461512 Query 16441 AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACAT 16500 ||| || || |||||| | ||| | | || || |||| || | ||| ||||| Sbjct 2461513 AAAGAAAAATTCCCTTTCCTTAGGATCTTTAGTGTAAGTGCCAATAAGGAGACTATACAT 2461572 Query 16501 TTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTAT 16560 ||| || || ||| | || ||||| || || ||||||||||| || | | || | || Sbjct 2461573 TTCAGAATGCATGCTTTCCATGGCAATTTGGAATCCATAGAAACAGCAGACTTCTGTAAT 2461632 Query 16561 TTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGC 16620 || |||| | |||| | ||| ||| ||| |||||||| || || |||||||| || Sbjct 2461633 CTGAACTTTTTGGCTAAATTGCTCCACCAAGTTTTCATTCACTATGCCATCACTTGCTGC 2461692 Query 16621 AAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATC 16680 ||| | ||||| | ||| ||| |||| |||| | || | | ||| | Sbjct 2461693 AAAGA--------ATGTGAT--GTGAGGTATCTTTCCTCAGGCTTCAGGACTTCCCAGTA 2461742 Query 16681 TTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTT 16740 | | ||||| || | | |||| || | | ||||||||| |||| | || || || Sbjct 2461743 CTGAATGTCTTTAGAAAGAGCCACCTCCCCAGTGGTCCAAAAGGAAGCCTCAGCTTTCTT 2461802 Query 16741 ATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 ||| | | |||||||| || ||||| || ||||| | ||| Sbjct 2461803 GTACTTCTGCCAAATATTATGGTATTCAATAGGAAAGATGAC 2461844 >seq260 Length=4071714 Score = 203 bits (224), Expect = 3e-47 Identities = 405/597 (68%), Gaps = 5/597 (1%) Strand=Plus/Minus Query 16189 TTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTT 16248 ||| ||||||||||| || || | || || | || || |||||||| |||||||| || Sbjct 1909776 TTTGAACATTAGACAGGCATAGCCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATT 1909717 Query 16249 GGAAAAAGTTAACCCTGGCATTTTTCCTCG-TTTCTTTAACCAGAATATCGCAGCAAATG 16307 || ||| || | || |||||| |||||| ||| || | |||| |||| | ||||| | Sbjct 1909716 GGGAAATGTCAGACCAGGCATTAGTCCTCGCTTTTTTGAGCCAGGATATTGATGCAAAAG 1909657 Query 16308 ACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAG 16367 | | |||||||| || || || | | |||||| || | | || ||||| | |||| Sbjct 1909656 AACTAGAAAAGAAAATTCCTTCCATTGCTGCAAAGGCTACAACACGCTCCGCATGGGTAG 1909597 Query 16368 CATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCG 16427 | ||||| | | |||||| | |||| || || || | || | |||| || || Sbjct 1909596 CTTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTAACACAAGGCAGCG 1909537 Query 16428 TTTCTATGGCCTTAA--ACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAAT 16485 || | ||||| |||| | || ||| ||||| || | | | | || || || ||||| Sbjct 1909536 TTCCAATGGCATTAAAGAGAAATTCCCTTTT--CTTAGAAACTTTAATGTAAGTGTCAAT 1909479 Query 16486 CAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCA 16545 || | ||| |||||||| || |||||||| || |||| || || || |||||||| || Sbjct 1909478 AAGGAGACTATACATTTCAGAATGTATGTTTTCAATGGAAATTTGGAAGCCATAGAAACA 1909419 Query 16546 TCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGAT 16605 | || || | | || ||||| | |||||| ||| ||| ||| |||||||| || Sbjct 1909418 GCAGGCTTCTGTAACATGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTCACTAT 1909359 Query 16606 ACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGT 16665 || ||| |||| ||||| || |||| || || ||||| | | | || |||| | Sbjct 1909358 GCCATCATTTGCTGCAAAGAATGCCAGTACGTATGATATGAAGTGTCTGTCCTCAGGCTT 1909299 Query 16666 AAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCT 16725 | | || | | | || || || | |||||| || || || |||||| Sbjct 1909298 CCGGGCTTCTCAGTGCTGAATGTCCTTAGAAAGATCCACCTCCTCCACGGTACAAAAGGA 1909239 Query 16726 AGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 |||| | || || || ||||| | ||||||||| ||||| || ||||| | ||| Sbjct 1909238 AGCCTCAGCTTTCTTGTACATCTGAAAAATATCATGGTATTCAATAGGAAAGAAGAC 1909182 >seq1 Length=63721086 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||| ||||||||||||||||| | || ||||| |||| |||||| Sbjct 1747007 TCATCTCTGCTGATGAGTTCGTTGGAAAAAGTAAGTCCCGGCATAAGACCTCTCTTCTTT 1747066 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| |||||||| || || || ||||| || || || |||| ||||| || Sbjct 1747067 AGCCAGAATATAGCAGCAAAAGATCCAGAGAAGAAAATCCCTTCTACAGCAGCAAAGGC 1747125 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984 ||| |||||||| ||||| || |||||||| || ||||| |||||||||||||||||||| Sbjct 1725784 AACTCGTTTTTCAAAGAAATTTGTTTTTCCTTCCAAAGAAATATTTTCCATAAAATCAAA 1725843 Query 15985 GGGATT 15990 |||||| Sbjct 1725844 GGGATT 1725849 >seq27 Length=27113625 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 ||||||||||||||||| || || ||||| || || | || || |||||||| |||||| Sbjct 23269026 AGGTGTTTAAACATTAGGCAGGCAAAGTCACATTGCAAACCCTCATCTCTGCTAATAAGT 23269085 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAG-C 16302 || |||||||| | | | | |||||| | ||| || || | |||| || | | | Sbjct 23269086 TCATTGGAAAATG-TGAGACAGGCATTAATACTCACTTATTGAGCCAGGATGTTGATGAA 23269144 Query 16303 AAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 ||| || || |||||||| || | || || | |||||| || Sbjct 23269145 AAAAGAACCAGAAAAGAAGATTCTTTCTACTGCTGCAAAGGC 23269186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511283350060000