Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq109 91.5 2e-13 seq172 89.7 8e-13 seq53 87.8 3e-12 seq160 86.0 9e-12 seq42 86.0 9e-12 seq15 84.2 3e-11 >seq109 Length=11202510 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 205690 TGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGA 205749 ||||| | ||||||| || ||||| || || ||| || |||||| || |||||||| Sbjct 6651651 TGATCCACTCCTTGACCTGAATAATCTGAATGCATCTCTTTATATTCTGCCCCAAAATGC 6651592 Query 205750 CGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTT 205789 | ||| ||||| ||||||||||| |||||||| ||||||| Sbjct 6651591 CTCCACTGAAAGCCATAAACTGGGCCTAAATCTCCTTCTT 6651552 >seq172 Length=7263250 Score = 89.7 bits (98), Expect = 8e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||| | || || |||| || ||||| || || || || ||| | ||| | ||| | Sbjct 739998 ATGAAGATTTTCGTAAAAACCCTAACCGGGAAGACGATCACTCTCGAGGTCGAACCCTCG 740057 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| ||| |||| || || || ||||| ||||| || || |||||||| Sbjct 740058 GATACAATAAAAAATGTAAAGGCCAAGATCCATGATAAGGAAGGAATTCCTCCTGATCAG 740117 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || |||||||| || || ||| |||| ||| | || || | || || ||| Sbjct 740118 CAGAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGCACCCTGTCTGACTACAAT 740177 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 |||||||| || || ||| | ||| | || || Sbjct 740178 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTT 740209 >seq53 Length=19262973 Score = 87.8 bits (96), Expect = 3e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||| | || |||||||| || || ||| | ||| | || | | | Sbjct 11236875 ATGCAGATCTTTGTGAAGGCCCTGACAGGCAAGACCATCACTCTTGAGGTGGAGCCCAGT 11236816 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| ||||| ||||| || || ||||| || ||||| || Sbjct 11236815 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGTATTCCCCCTGACCAG 11236756 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || ||||||||||| ||||| | |||||| | || || | ||| || || Sbjct 11236755 CAGCGTCTGATTTTTGCAGGTAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAAC 11236696 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT 124754 || || || || || || |||| |||| ||||| Sbjct 11236695 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTACGT 11236660 >seq160 Length=8028372 Score = 86.0 bits (94), Expect = 9e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 205690 TGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGA 205749 || || | ||||||| | ||||| || || ||| || ||| || || |||||||| Sbjct 6174757 TGGTCCACTCCTTGACCGGAATAATCTGAATTCATTTCTTTATGTTCTGCCCCAAAATGC 6174816 Query 205750 CGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTT 205789 | ||| |||||||||||||||||||||||||| ||||||| Sbjct 6174817 CTCCACTGAAAACCATAAACTGGACCTAAATCTCCTTCTT 6174856 >seq42 Length=21960898 Score = 86.0 bits (94), Expect = 9e-12 Identities = 146/211 (69%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 || || || ||| | ||||| || || ||||| || || ||| | ||| | || | | | Sbjct 12037641 ATACAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGCCCAGT 12037700 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTAT--ACCACCTGATC 124656 || || || ||| | ||| ||||| ||||| || || ||||| ||| ||||| | Sbjct 12037701 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGTATCCACCCCCTGACC 12037760 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | ||| | || ||||||||||| ||||| | |||||| | || || | ||| || | Sbjct 12037761 AGCAATGTCTGATTTTTGCAGGTAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACA 12037820 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 | || || ||||| || || |||| |||| Sbjct 12037821 ACATCCAGAAAGAGTCCACCCTGCACCTGGT 12037851 >seq15 Length=34439403 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || ||||| || | || | || || || ||| | || ||||| | Sbjct 33106252 ATGCAAATTTTCATAAAAACCCCAATGAGGAAGACCATCACTCTCAAGGTTGAACCCTCG 33106193 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| ||| ||||| || || || ||||||||||| || | |||||||| Sbjct 33106192 GATACAATCGAAAATGTAAAATCCAAGATCCAGGATAAAGAAGGAATTCGTCCTGATCAG 33106133 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || |||||||| || || ||| | || |||| || || || ||||| | Sbjct 33106132 CAGAGACTGATTTTTGCTGGCAAGCAACTGGAAAATAGACGCACCTTGTCTGATTACCAC 33106073 Query 124719 ATTCAAAAAGAATCAACTTTGCAT 124742 ||| |||| || || ||| | ||| Sbjct 33106072 ATTTAAAAGGAGTCCACTCTACAT 33106049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755262414400000