Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq109 91.5 2e-13
seq172 89.7 8e-13
seq53 87.8 3e-12
seq160 86.0 9e-12
seq42 86.0 9e-12
seq15 84.2 3e-11
>seq109
Length=11202510
Score = 91.5 bits (100), Expect = 2e-13
Identities = 80/100 (80%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 205690 TGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGA 205749
||||| | ||||||| || ||||| || || ||| || |||||| || ||||||||
Sbjct 6651651 TGATCCACTCCTTGACCTGAATAATCTGAATGCATCTCTTTATATTCTGCCCCAAAATGC 6651592
Query 205750 CGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTT 205789
| ||| ||||| ||||||||||| |||||||| |||||||
Sbjct 6651591 CTCCACTGAAAGCCATAAACTGGGCCTAAATCTCCTTCTT 6651552
>seq172
Length=7263250
Score = 89.7 bits (98), Expect = 8e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||| | || || |||| || ||||| || || || || ||| | ||| | ||| |
Sbjct 739998 ATGAAGATTTTCGTAAAAACCCTAACCGGGAAGACGATCACTCTCGAGGTCGAACCCTCG 740057
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|||||||| ||| |||| || || || ||||| ||||| || || ||||||||
Sbjct 740058 GATACAATAAAAAATGTAAAGGCCAAGATCCATGATAAGGAAGGAATTCCTCCTGATCAG 740117
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| || || |||||||| || || ||| |||| ||| | || || | || || |||
Sbjct 740118 CAGAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGCACCCTGTCTGACTACAAT 740177
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750
|||||||| || || ||| | ||| | || ||
Sbjct 740178 ATTCAAAAGGAGTCCACTCTTCATCTTGTGTT 740209
>seq53
Length=19262973
Score = 87.8 bits (96), Expect = 3e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||| | || |||||||| || || ||| | ||| | || | | |
Sbjct 11236875 ATGCAGATCTTTGTGAAGGCCCTGACAGGCAAGACCATCACTCTTGAGGTGGAGCCCAGT 11236816
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| | ||| ||||| ||||| || || ||||| || ||||| ||
Sbjct 11236815 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGTATTCCCCCTGACCAG 11236756
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| | || ||||||||||| ||||| | |||||| | || || | ||| || ||
Sbjct 11236755 CAGCGTCTGATTTTTGCAGGTAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAAC 11236696
Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGT 124754
|| || || || || || |||| |||| |||||
Sbjct 11236695 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTACGT 11236660
>seq160
Length=8028372
Score = 86.0 bits (94), Expect = 9e-12
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 205690 TGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGA 205749
|| || | ||||||| | ||||| || || ||| || ||| || || ||||||||
Sbjct 6174757 TGGTCCACTCCTTGACCGGAATAATCTGAATTCATTTCTTTATGTTCTGCCCCAAAATGC 6174816
Query 205750 CGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTT 205789
| ||| |||||||||||||||||||||||||| |||||||
Sbjct 6174817 CTCCACTGAAAACCATAAACTGGACCTAAATCTCCTTCTT 6174856
>seq42
Length=21960898
Score = 86.0 bits (94), Expect = 9e-12
Identities = 146/211 (69%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|| || || ||| | ||||| || || ||||| || || ||| | ||| | || | | |
Sbjct 12037641 ATACAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTGGAGCCCAGT 12037700
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTAT--ACCACCTGATC 124656
|| || || ||| | ||| ||||| ||||| || || ||||| ||| ||||| |
Sbjct 12037701 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGTATCCACCCCCTGACC 12037760
Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716
| ||| | || ||||||||||| ||||| | |||||| | || || | ||| || |
Sbjct 12037761 AGCAATGTCTGATTTTTGCAGGTAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACA 12037820
Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747
| || || ||||| || || |||| ||||
Sbjct 12037821 ACATCCAGAAAGAGTCCACCCTGCACCTGGT 12037851
>seq15
Length=34439403
Score = 84.2 bits (92), Expect = 3e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
|||||||| || ||||| || | || | || || || ||| | || ||||| |
Sbjct 33106252 ATGCAAATTTTCATAAAAACCCCAATGAGGAAGACCATCACTCTCAAGGTTGAACCCTCG 33106193
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|||||||| ||| ||||| || || || ||||||||||| || | ||||||||
Sbjct 33106192 GATACAATCGAAAATGTAAAATCCAAGATCCAGGATAAAGAAGGAATTCGTCCTGATCAG 33106133
Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718
|| || || |||||||| || || ||| | || |||| || || || ||||| |
Sbjct 33106132 CAGAGACTGATTTTTGCTGGCAAGCAACTGGAAAATAGACGCACCTTGTCTGATTACCAC 33106073
Query 124719 ATTCAAAAAGAATCAACTTTGCAT 124742
||| |||| || || ||| | |||
Sbjct 33106072 ATTTAAAAGGAGTCCACTCTACAT 33106049
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755262414400000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |