Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq172 102 1e-16 seq38 93.3 6e-14 seq16 93.3 6e-14 seq87 89.7 8e-13 seq12 89.7 8e-13 seq8 89.7 8e-13 seq59 87.8 3e-12 seq277 86.0 9e-12 seq20 86.0 9e-12 seq183 84.2 3e-11 seq7 84.2 3e-11 seq3 84.2 3e-11 >seq172 Length=7263250 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| || || ||| || ||||| || || || Sbjct 740224 CCACCGCGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATATTGTAGTCAGA 740166 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || || | | ||| |||| ||| || ||||||||||||| ||| |||||||| ||||| Sbjct 740165 CAGGGTGCGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 740106 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 740105 AATTCCTTCCTTATCATG 740088 >seq38 Length=23493148 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| || || ||| || || || || || || Sbjct 5890872 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 5890930 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || || | | ||| || | ||| || ||||||||||||| ||| |||||||| ||||| Sbjct 5890931 CAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 5890990 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 5890991 AATTCCTTCCTTATCCTG 5891008 >seq16 Length=33020160 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| || || ||| || || || || || || Sbjct 11074218 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 11074160 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || || | | ||| || | ||| || ||||||||||||| ||| |||||||| ||||| Sbjct 11074159 CAGGGTGCGTCCATCTTCCAGTTGCTTACCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 11074100 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 11074099 AATTCCTTCCTTATCCTG 11074082 >seq87 Length=12919766 Score = 89.7 bits (98), Expect = 8e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106 || ||||| | |||||| || || | ||| | ||| || || ||| || || || || || Sbjct 9400105 GTGCCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTC 9400163 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 || || || | | || || | ||| || ||||||||||||| ||| |||||||| || Sbjct 9400164 AGACAGGGTGCATCCATTTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGG 9400223 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 |||||||||||| ||||| || Sbjct 9400224 AGGAATTCCTTCCTTATCCTG 9400244 >seq12 Length=37268909 Score = 89.7 bits (98), Expect = 8e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | ||||||||||| || |||||||| || || || | ||| || Sbjct 28034351 ACCAATTGCAGCGTAGATTCTTTTTGGATGTTATAATCAGACAGTGTGTGCCCATCTTCC 28034292 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||| |||||||| |||||||| ||||| || ||||| || |||||||| ||||| Sbjct 28034291 AGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTG 28034233 >seq8 Length=38990876 Score = 89.7 bits (98), Expect = 8e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| || || ||| || || || || || || Sbjct 3001672 CCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 3001614 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || || | | | | || | ||| || ||||||||||||||||| |||||||| |||| Sbjct 3001613 CAGGGTGCGTCCAACTTCCAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGA 3001554 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 3001553 AATTCCTTCCTTATCCTG 3001536 >seq59 Length=18190503 Score = 87.8 bits (96), Expect = 3e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 10453 TAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTG 10512 ||||||| | |||| ||||||| ||| | || || ||| | |||||||| || | || Sbjct 17844709 TAGCTCCACGTTCTGGTTTAGCTGCAAAACATTTCATAGATGTAGGAGCTGGTGTCACTG 17844650 Query 10513 ACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAAT 10553 | ||||||||||||||||| || || |||||||| |||||| Sbjct 17844649 ATGAAGATTATAGAGGAAACGTTGGTGTAATATTCTTTAAT 17844609 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||| | || || | ||| | ||| || || ||| || || || || || || Sbjct 6109920 CCACCACGAAGTGTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 6109978 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || || | | ||| || | ||| || ||||||||||||| ||| ||||||| ||||| Sbjct 6109979 CAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATGAGGAGG 6110038 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 6110039 AATTCCTTCCTTATCCTG 6110056 >seq277 Length=3865512 Score = 86.0 bits (94), Expect = 9e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106 || ||||| | |||||| || || | ||| ||||| || || ||| || || || || || Sbjct 3300865 GTGCCACCACAAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGA-ATGTTGTAGTC 3300923 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 || || || | | ||| || | ||| || ||||||||||||| | | |||||||| || Sbjct 3300924 AGACAGGGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTATCTGCTGATCAGG 3300983 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 ||||||| ||| ||||| || Sbjct 3300984 AGGAATTTTTTCCTTATCCTG 3301004 >seq20 Length=29555478 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| || || ||| || || || || || || Sbjct 26628083 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 26628025 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || || | | ||| || | ||| | ||||||||||||| ||| |||||||| ||||| Sbjct 26628024 CAGGGTGCGTCCATCTTCCAGTTGCTCGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 26627965 Query 146170 AATTCCTTCTTTAT 146183 ||||||||| |||| Sbjct 26627964 AATTCCTTCCTTAT 26627951 >seq183 Length=6919543 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | ||||||||||| || || || || || || || | | ||| || Sbjct 1039994 ACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGCCCATCTTCC 1040053 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||| |||||||| |||||||| ||||| || |||||||| |||||||| ||||| Sbjct 1040054 AGATGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTG 1040112 >seq7 Length=39982324 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATT-CTTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| | | |||| || || || | || || Sbjct 8033356 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGTCTACTTTTGA-ATGTTGGAGTCAGA 8033414 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || || | | ||| || ||| || ||||||||||||| ||| |||||||| ||||| Sbjct 8033415 CAGGGTGCGTCCATCTTCACGTTGCTTGCCAGCAAAAATCATTCTCTGCTGATCAGGAGG 8033474 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||||||||| || Sbjct 8033475 AATTCCTTCTTTATCCTG 8033492 >seq3 Length=52730029 Score = 84.2 bits (92), Expect = 3e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 146059 AAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTC 146117 |||||| || || | ||| | |||||| || ||| || || || || || || || || Sbjct 39783076 AAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGACAGGGTGT 39783134 Query 146118 TGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTT 146177 | ||| || | ||| || |||||| |||||| ||| |||||||| ||||||||||||| Sbjct 39783135 GTCCATCTTCCAGTTGCTTGCCAGCAGAAATCAGTCTCTGCTGATCAGGAGGAATTCCTT 39783194 Query 146178 CTTTATCTTG 146187 | ||||| || Sbjct 39783195 CCTTATCCTG 39783204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743335871360000