Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq172 102 1e-16
seq38 93.3 6e-14
seq16 93.3 6e-14
seq87 89.7 8e-13
seq12 89.7 8e-13
seq8 89.7 8e-13
seq59 87.8 3e-12
seq277 86.0 9e-12
seq20 86.0 9e-12
seq183 84.2 3e-11
seq7 84.2 3e-11
seq3 84.2 3e-11
>seq172
Length=7263250
Score = 102 bits (112), Expect = 1e-16
Identities = 107/138 (78%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | ||| || || ||| || ||||| || || ||
Sbjct 740224 CCACCGCGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATATTGTAGTCAGA 740166
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
|| || | | ||| |||| ||| || ||||||||||||| ||| |||||||| |||||
Sbjct 740165 CAGGGTGCGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 740106
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 740105 AATTCCTTCCTTATCATG 740088
>seq38
Length=23493148
Score = 93.3 bits (102), Expect = 6e-14
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | ||| || || ||| || || || || || ||
Sbjct 5890872 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 5890930
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
|| || | | ||| || | ||| || ||||||||||||| ||| |||||||| |||||
Sbjct 5890931 CAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 5890990
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 5890991 AATTCCTTCCTTATCCTG 5891008
>seq16
Length=33020160
Score = 93.3 bits (102), Expect = 6e-14
Identities = 105/138 (76%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | ||| || || ||| || || || || || ||
Sbjct 11074218 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 11074160
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
|| || | | ||| || | ||| || ||||||||||||| ||| |||||||| |||||
Sbjct 11074159 CAGGGTGCGTCCATCTTCCAGTTGCTTACCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 11074100
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 11074099 AATTCCTTCCTTATCCTG 11074082
>seq87
Length=12919766
Score = 89.7 bits (98), Expect = 8e-13
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106
|| ||||| | |||||| || || | ||| | ||| || || ||| || || || || ||
Sbjct 9400105 GTGCCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTC 9400163
Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166
|| || || | | || || | ||| || ||||||||||||| ||| |||||||| ||
Sbjct 9400164 AGACAGGGTGCATCCATTTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGG 9400223
Query 146167 AGGAATTCCTTCTTTATCTTG 146187
|||||||||||| ||||| ||
Sbjct 9400224 AGGAATTCCTTCCTTATCCTG 9400244
>seq12
Length=37268909
Score = 89.7 bits (98), Expect = 8e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
||||| || | ||||||||||| || |||||||| || || || | ||| ||
Sbjct 28034351 ACCAATTGCAGCGTAGATTCTTTTTGGATGTTATAATCAGACAGTGTGTGCCCATCTTCC 28034292
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
| |||||| |||||||| |||||||| ||||| || ||||| || |||||||| |||||
Sbjct 28034291 AGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTG 28034233
>seq8
Length=38990876
Score = 89.7 bits (98), Expect = 8e-13
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | ||| || || ||| || || || || || ||
Sbjct 3001672 CCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 3001614
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
|| || | | | | || | ||| || ||||||||||||||||| |||||||| ||||
Sbjct 3001613 CAGGGTGCGTCCAACTTCCAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGA 3001554
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 3001553 AATTCCTTCCTTATCCTG 3001536
>seq59
Length=18190503
Score = 87.8 bits (96), Expect = 3e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 10453 TAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTG 10512
||||||| | |||| ||||||| ||| | || || ||| | |||||||| || | ||
Sbjct 17844709 TAGCTCCACGTTCTGGTTTAGCTGCAAAACATTTCATAGATGTAGGAGCTGGTGTCACTG 17844650
Query 10513 ACGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAAT 10553
| ||||||||||||||||| || || |||||||| ||||||
Sbjct 17844649 ATGAAGATTATAGAGGAAACGTTGGTGTAATATTCTTTAAT 17844609
Score = 84.2 bits (92), Expect = 3e-11
Identities = 103/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||| | || || | ||| | ||| || || ||| || || || || || ||
Sbjct 6109920 CCACCACGAAGTGTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 6109978
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
|| || | | ||| || | ||| || ||||||||||||| ||| ||||||| |||||
Sbjct 6109979 CAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATGAGGAGG 6110038
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||| ||||| ||
Sbjct 6110039 AATTCCTTCCTTATCCTG 6110056
>seq277
Length=3865512
Score = 86.0 bits (94), Expect = 9e-12
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106
|| ||||| | |||||| || || | ||| ||||| || || ||| || || || || ||
Sbjct 3300865 GTGCCACCACAAAGTCTCAACACAAGATGAAAAGTGGACTCCTTTTGA-ATGTTGTAGTC 3300923
Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166
|| || || | | ||| || | ||| || ||||||||||||| | | |||||||| ||
Sbjct 3300924 AGACAGGGTGCATCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTATCTGCTGATCAGG 3300983
Query 146167 AGGAATTCCTTCTTTATCTTG 146187
||||||| ||| ||||| ||
Sbjct 3300984 AGGAATTTTTTCCTTATCCTG 3301004
>seq20
Length=29555478
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/134 (75%), Gaps = 2/134 (1%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | ||| || || ||| || || || || || ||
Sbjct 26628083 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 26628025
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
|| || | | ||| || | ||| | ||||||||||||| ||| |||||||| |||||
Sbjct 26628024 CAGGGTGCGTCCATCTTCCAGTTGCTCGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 26627965
Query 146170 AATTCCTTCTTTAT 146183
||||||||| ||||
Sbjct 26627964 AATTCCTTCCTTAT 26627951
>seq183
Length=6919543
Score = 84.2 bits (92), Expect = 3e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
||||| || | ||||||||||| || || || || || || || | | ||| ||
Sbjct 1039994 ACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGCCCATCTTCC 1040053
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
| ||||| |||||||| |||||||| ||||| || |||||||| |||||||| |||||
Sbjct 1040054 AGATGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTG 1040112
>seq7
Length=39982324
Score = 84.2 bits (92), Expect = 3e-11
Identities = 103/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATT-CTTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | ||| | | |||| || || || | || ||
Sbjct 8033356 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGTCTACTTTTGA-ATGTTGGAGTCAGA 8033414
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
|| || | | ||| || ||| || ||||||||||||| ||| |||||||| |||||
Sbjct 8033415 CAGGGTGCGTCCATCTTCACGTTGCTTGCCAGCAAAAATCATTCTCTGCTGATCAGGAGG 8033474
Query 146170 AATTCCTTCTTTATCTTG 146187
||||||||||||||| ||
Sbjct 8033475 AATTCCTTCTTTATCCTG 8033492
>seq3
Length=52730029
Score = 84.2 bits (92), Expect = 3e-11
Identities = 98/130 (75%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 146059 AAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTC 146117
|||||| || || | ||| | |||||| || ||| || || || || || || || ||
Sbjct 39783076 AAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGACAGGGTGT 39783134
Query 146118 TGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTT 146177
| ||| || | ||| || |||||| |||||| ||| |||||||| |||||||||||||
Sbjct 39783135 GTCCATCTTCCAGTTGCTTGCCAGCAGAAATCAGTCTCTGCTGATCAGGAGGAATTCCTT 39783194
Query 146178 CTTTATCTTG 146187
| ||||| ||
Sbjct 39783195 CCTTATCCTG 39783204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743335871360000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |