Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq4 1373 0.0 seq14 104 2e-17 >seq4 Length=47562486 Score = 1373 bits (1522), Expect = 0.0 Identities = 1154/1412 (82%), Gaps = 14/1412 (1%) Strand=Plus/Minus Query 107227 TAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCT-GT 107285 |||||||||||| ||||||||||||||||||| ||||||||| ||||| || Sbjct 11364324 TAGTTTGTAATTGAAGGCATTTTGTTCTGTCC-------TCCTCCTCC----TGCCTTGT 11364276 Query 107286 GCCCAAACTCTCCTG-ATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTG 107344 || |||||| || |||||| || |||||||||| || ||||||||||||| | | Sbjct 11364275 ACCTGAACTCTGTTGGATCTCC-ATTACATGAAGATGTCTTGGTGGAAGAAGAATTTCAG 11364217 Query 107345 CCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAG 107404 || | ||| | ||||||||||||||||||||||||||||||||| ||||| | ||||| Sbjct 11364216 CCTGCAACAGTACCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCATTGTTGCACTGAG 11364157 Query 107405 ACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCA 107464 ||| || ||||| || ||||| | | || | ||||||||||||||| | | || || Sbjct 11364156 ACTGTCTCTCAGATTCAAATGCAACTTTGAGCACCTGGATCTGGAGTCCAAGAATTTTCA 11364097 Query 107465 GAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCAT 107524 || || |||||||||||| ||||||| | ||||||||||||| | || || || Sbjct 11364096 AAGCAGGCCCTGTAGGGACATCATGTACAAGTCCTTGAAGCTGCCAGCCAGGAAATTAAT 11364037 Query 107525 CAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAA 107584 |||||| ||||||||||| |||||||| |||||||||||| ||| ||| | |||| Sbjct 11364036 CAACTGCTCTGGGATCACCCGAGGGGATCAGGAAGCAGTGACTTGGGCTCTCTTGAACAA 11363977 Query 107585 CCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAG 107644 | |||| ||||| |||||| |||| |||| | | || ||||||||| | ||||| Sbjct 11363976 CTTGGAGACTAAGAACAAGCGGAAGCCTTTCACAGATGCATACTACCTCAACCTGACCAG 11363917 Query 107645 AGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGA 107704 |||| ||| ||| |||||| |||||||| ||| ||||||||||||| |||||||| Sbjct 11363916 GAACTGCAAGCACTTTAAGGCCATGAGGAAGTTTATAGAGTTCCCACTGAGCAAAGAAGA 11363857 Query 107705 GCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACG 107764 | ||||||||||||| || ||||| |||||||||||||||||||||||||| |||||| | Sbjct 11363856 GTTAGACTTCCCCATCGCATACTCTATGGTGGTCCATGAGAAGATTGAAAATTTTGAAAG 11363797 Query 107765 GCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTC 107824 ||| || ||||| ||||||||||| |||||||||||||||||||| ||||||| |||||| Sbjct 11363796 GCTACTTCGAGCTGTGTATGCCCCACAGAACATATACTGTGTCCATGTGGATGAGAAGTC 11363737 Query 107825 CCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCAT 107884 |||||| ||||||||| |||| | || ||| |||| || ||||| ||||||||||| Sbjct 11363736 CCCAGAAACTTTCAAAAAGGCAACGAGAGCAATTGTTTCATGTTTCCCAAATGTCTTCAT 11363677 Query 107885 GGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAA 107944 |||||||||| |||| || ||||||||||| ||||||||||| ||||| |||||| |||| Sbjct 11363676 GGCCAGTAAGCTGGTTCCAGTGGTTTATGCATCCTGGTCCAGGGTGCAGGCTGACTTGAA 11363617 Query 107945 CTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGG 108004 ||| |||||||| |||||||||||| |||| |||||||| ||||| || || || || || Sbjct 11363616 CTGCATGGAAGATTTGCTCCAGAGCCCAGTACCATGGAAATACTTCCTAAACACCTGTGG 11363557 Query 108005 GACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGG 108064 |||||||||||| |||||||||||||| |||||||||| ||||||||| | ||||| || Sbjct 11363556 GACAGACTTCCCTATAAAGACCAATGCTGAGATGGTCCAAGCCCTCAAGCTTTTGAATGG 11363497 Query 108065 TAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCG 108124 ||||||||||||||||| ||| ||||| | | ||||||| ||||||| |||| | Sbjct 11363496 GAAGAACAGTATGGAGTCAGAGATACCTAGTAACCACAAAAAAGCTCGCTGGCAATATCA 11363437 Query 108125 CTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAA 108184 ||||||| ||||||||||| || || || || ||| ||||||||||||||||||||| Sbjct 11363436 CTATGAGATGACAGACACATTGCACATGACAAGTCAGAAGAAGGACCCTCCCCCTGATAA 11363377 Query 108185 TTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGT 108244 |||||| ||||||||||| ||||||||| ||||||| ||||||| ||| ||||||||||| Sbjct 11363376 TTTACCTATGTTCACAGGAAATGCCTATATTGTGGCTTCTCGAGACTTCGTCCAACATGT 11363317 Query 108245 CTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGA 108304 |||||| || || ||||||||| |||| |||||||||| ||||| ||||| || || || Sbjct 11363316 CTTAGAGAATCCCAAATCCCAACAACTGATTGAATGGGTAAAAGATACCTACAGTCCTGA 11363257 Query 108305 CGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCA 108364 ||||| |||||||| |||||||||||||| || |||||||||||||||||||| ||| Sbjct 11363256 TGAACATCTCTGGGCTACCCTTCAGCGTGCACCATGGATGCCTGGCTCTGTTCCCTACCA 11363197 Query 108365 CCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCA 108424 | |||||||| |||| |||||| || ||||||| || | ||||||||||||||| |||| Sbjct 11363196 CTCCAAGTATGACATTTCAGACTTGGCTGCCATTGCTCGACTCGTCAAGTGGCAGAACCA 11363137 Query 108425 CGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGC 108484 ||||||||| | |||| ||| || |||||| |||| ||| |||||||||| | | |||| Sbjct 11363136 TGAGGGAGATATGAGCAAGGGAGCACCTTATCCACCTTGCACTGGAATCCACCAGCGGGC 11363077 Query 108485 CATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGC 108544 ||||| ||||| || | ||||||||| | ||||| | |||||||||||||| ||||| Sbjct 11363076 TATCTGTATTTATGGAACTGGGGACCTGCATTGGATGTTACAGAACCATCACCTGTTGGC 11363017 Query 108545 AAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACG 108604 ||||| |||||||| || || |||||||| | || |||||||||||||||||| |||| Sbjct 11363016 CAACAAATTTGACCCAAGAGTAGATGATAATGCTCTCCAGTGCTTAGAAGAGTACTTACG 11362957 Query 108605 TCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 |||||||||| ||||||||||| || |||| Sbjct 11362956 CTATAAGGCCATTTATGGGACTGACCTCTGAG 11362925 >seq14 Length=34905451 Score = 104 bits (114), Expect = 2e-17 Identities = 192/282 (68%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| |||||||||||||||||||| ||| | || |||||||| |||| | | Sbjct 23451510 GAGTGGGCAAAAGACACCTATAGCCCCGATGAATATCTGTGGGCCACTATTCAAAGGATT 23451569 Query 108336 CCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCC 108395 || | |||||| | | ||| || || || ||| || |||||| || Sbjct 23451570 CCAGACGTCCCTGGCGCACTCCCTTCAAACGATAAATACGACACATCTGACATGCACGCG 23451629 Query 108396 ATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTAT 108455 | || ||| | ||||| ||||| ||| || || ||||| || ||| || || || Sbjct 23451630 TTTGCAAGGTTTGTCAAATGGCACTACTTTGAAGGCGATGTTTCCAAGGGCGCCCCCTAC 23451689 Query 108456 GCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTAC 108515 |||||||| ||| |||||| | | || | ||| ||| ||||| ||||| || || Sbjct 23451690 CCACCCTGCAGTGGCATCCATGTGCGCTCCGTGTGCGTTTTTGGGGCAGGGGATTTGAAC 23451749 Query 108516 TGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||| | | || || ||| | || || |||||||||||| Sbjct 23451750 TGGATGTTACGCAAACACCACTTGTTTGCCAACAAGTTTGAC 23451791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348181787217000