Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq4 1373 0.0
seq14 104 2e-17
>seq4
Length=47562486
Score = 1373 bits (1522), Expect = 0.0
Identities = 1154/1412 (82%), Gaps = 14/1412 (1%)
Strand=Plus/Minus
Query 107227 TAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCT-GT 107285
|||||||||||| ||||||||||||||||||| ||||||||| ||||| ||
Sbjct 11364324 TAGTTTGTAATTGAAGGCATTTTGTTCTGTCC-------TCCTCCTCC----TGCCTTGT 11364276
Query 107286 GCCCAAACTCTCCTG-ATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTG 107344
|| |||||| || |||||| || |||||||||| || ||||||||||||| | |
Sbjct 11364275 ACCTGAACTCTGTTGGATCTCC-ATTACATGAAGATGTCTTGGTGGAAGAAGAATTTCAG 11364217
Query 107345 CCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAG 107404
|| | ||| | ||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct 11364216 CCTGCAACAGTACCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCATTGTTGCACTGAG 11364157
Query 107405 ACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCA 107464
||| || ||||| || ||||| | | || | ||||||||||||||| | | || ||
Sbjct 11364156 ACTGTCTCTCAGATTCAAATGCAACTTTGAGCACCTGGATCTGGAGTCCAAGAATTTTCA 11364097
Query 107465 GAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCAT 107524
|| || |||||||||||| ||||||| | ||||||||||||| | || || ||
Sbjct 11364096 AAGCAGGCCCTGTAGGGACATCATGTACAAGTCCTTGAAGCTGCCAGCCAGGAAATTAAT 11364037
Query 107525 CAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAA 107584
|||||| ||||||||||| |||||||| |||||||||||| ||| ||| | ||||
Sbjct 11364036 CAACTGCTCTGGGATCACCCGAGGGGATCAGGAAGCAGTGACTTGGGCTCTCTTGAACAA 11363977
Query 107585 CCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAG 107644
| |||| ||||| |||||| |||| |||| | | || ||||||||| | |||||
Sbjct 11363976 CTTGGAGACTAAGAACAAGCGGAAGCCTTTCACAGATGCATACTACCTCAACCTGACCAG 11363917
Query 107645 AGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGA 107704
|||| ||| ||| |||||| |||||||| ||| ||||||||||||| ||||||||
Sbjct 11363916 GAACTGCAAGCACTTTAAGGCCATGAGGAAGTTTATAGAGTTCCCACTGAGCAAAGAAGA 11363857
Query 107705 GCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACG 107764
| ||||||||||||| || ||||| |||||||||||||||||||||||||| |||||| |
Sbjct 11363856 GTTAGACTTCCCCATCGCATACTCTATGGTGGTCCATGAGAAGATTGAAAATTTTGAAAG 11363797
Query 107765 GCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTC 107824
||| || ||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||
Sbjct 11363796 GCTACTTCGAGCTGTGTATGCCCCACAGAACATATACTGTGTCCATGTGGATGAGAAGTC 11363737
Query 107825 CCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCAT 107884
|||||| ||||||||| |||| | || ||| |||| || ||||| |||||||||||
Sbjct 11363736 CCCAGAAACTTTCAAAAAGGCAACGAGAGCAATTGTTTCATGTTTCCCAAATGTCTTCAT 11363677
Query 107885 GGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAA 107944
|||||||||| |||| || ||||||||||| ||||||||||| ||||| |||||| ||||
Sbjct 11363676 GGCCAGTAAGCTGGTTCCAGTGGTTTATGCATCCTGGTCCAGGGTGCAGGCTGACTTGAA 11363617
Query 107945 CTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGG 108004
||| |||||||| |||||||||||| |||| |||||||| ||||| || || || || ||
Sbjct 11363616 CTGCATGGAAGATTTGCTCCAGAGCCCAGTACCATGGAAATACTTCCTAAACACCTGTGG 11363557
Query 108005 GACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGG 108064
|||||||||||| |||||||||||||| |||||||||| ||||||||| | ||||| ||
Sbjct 11363556 GACAGACTTCCCTATAAAGACCAATGCTGAGATGGTCCAAGCCCTCAAGCTTTTGAATGG 11363497
Query 108065 TAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCG 108124
||||||||||||||||| ||| ||||| | | ||||||| ||||||| |||| |
Sbjct 11363496 GAAGAACAGTATGGAGTCAGAGATACCTAGTAACCACAAAAAAGCTCGCTGGCAATATCA 11363437
Query 108125 CTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAA 108184
||||||| ||||||||||| || || || || ||| |||||||||||||||||||||
Sbjct 11363436 CTATGAGATGACAGACACATTGCACATGACAAGTCAGAAGAAGGACCCTCCCCCTGATAA 11363377
Query 108185 TTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGT 108244
|||||| ||||||||||| ||||||||| ||||||| ||||||| ||| |||||||||||
Sbjct 11363376 TTTACCTATGTTCACAGGAAATGCCTATATTGTGGCTTCTCGAGACTTCGTCCAACATGT 11363317
Query 108245 CTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGA 108304
|||||| || || ||||||||| |||| |||||||||| ||||| ||||| || || ||
Sbjct 11363316 CTTAGAGAATCCCAAATCCCAACAACTGATTGAATGGGTAAAAGATACCTACAGTCCTGA 11363257
Query 108305 CGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCA 108364
||||| |||||||| |||||||||||||| || |||||||||||||||||||| |||
Sbjct 11363256 TGAACATCTCTGGGCTACCCTTCAGCGTGCACCATGGATGCCTGGCTCTGTTCCCTACCA 11363197
Query 108365 CCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCA 108424
| |||||||| |||| |||||| || ||||||| || | ||||||||||||||| ||||
Sbjct 11363196 CTCCAAGTATGACATTTCAGACTTGGCTGCCATTGCTCGACTCGTCAAGTGGCAGAACCA 11363137
Query 108425 CGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGC 108484
||||||||| | |||| ||| || |||||| |||| ||| |||||||||| | | ||||
Sbjct 11363136 TGAGGGAGATATGAGCAAGGGAGCACCTTATCCACCTTGCACTGGAATCCACCAGCGGGC 11363077
Query 108485 CATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGC 108544
||||| ||||| || | ||||||||| | ||||| | |||||||||||||| |||||
Sbjct 11363076 TATCTGTATTTATGGAACTGGGGACCTGCATTGGATGTTACAGAACCATCACCTGTTGGC 11363017
Query 108545 AAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACG 108604
||||| |||||||| || || |||||||| | || |||||||||||||||||| ||||
Sbjct 11363016 CAACAAATTTGACCCAAGAGTAGATGATAATGCTCTCCAGTGCTTAGAAGAGTACTTACG 11362957
Query 108605 TCATAAGGCCATCTATGGGACTGAACTTTGAG 108636
|||||||||| ||||||||||| || ||||
Sbjct 11362956 CTATAAGGCCATTTATGGGACTGACCTCTGAG 11362925
>seq14
Length=34905451
Score = 104 bits (114), Expect = 2e-17
Identities = 192/282 (68%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335
|| |||| |||||||||||||||||||| ||| | || |||||||| |||| | |
Sbjct 23451510 GAGTGGGCAAAAGACACCTATAGCCCCGATGAATATCTGTGGGCCACTATTCAAAGGATT 23451569
Query 108336 CCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCC 108395
|| | |||||| | | ||| || || || ||| || |||||| ||
Sbjct 23451570 CCAGACGTCCCTGGCGCACTCCCTTCAAACGATAAATACGACACATCTGACATGCACGCG 23451629
Query 108396 ATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTAT 108455
| || ||| | ||||| ||||| ||| || || ||||| || ||| || || ||
Sbjct 23451630 TTTGCAAGGTTTGTCAAATGGCACTACTTTGAAGGCGATGTTTCCAAGGGCGCCCCCTAC 23451689
Query 108456 GCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTAC 108515
|||||||| ||| |||||| | | || | ||| ||| ||||| ||||| || ||
Sbjct 23451690 CCACCCTGCAGTGGCATCCATGTGCGCTCCGTGTGCGTTTTTGGGGCAGGGGATTTGAAC 23451749
Query 108516 TGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
||||| | | || || ||| | || || ||||||||||||
Sbjct 23451750 TGGATGTTACGCAAACACCACTTGTTTGCCAACAAGTTTGAC 23451791
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348181787217000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |