Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq281 104 2e-17 seq73 104 2e-17 seq143 98.7 8e-16 seq64 93.3 3e-14 seq12 89.7 4e-13 seq37 87.8 1e-12 seq13 87.8 1e-12 >seq281 Length=3633602 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||||||||| ||||||||||| | || ||| | |||| Sbjct 114464 AGGACCAAGTGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTACGCCCATCT 114523 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | || || || || ||| | |||||||| || Sbjct 114524 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGGATACCTTCCTTGTCT 114583 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| |||||| ||||| ||||||| | Sbjct 114584 TGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTC 114643 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || ||||| || || || || || ||||| Sbjct 114644 TTACCAGTCAAGGTCTTCACGAAGATCTGCAT 114675 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || || |||||||| || ||||||||||| | || || | ||| Sbjct 126266 AAGGACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 126325 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || || || ||| |||| | || ||||| || ||| | ||||||||| || Sbjct 126326 TTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCAGGGGGGATGCCTTCCTTGTC 126385 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | |||||| | ||| ||||||| ||||| ||||| |||||| | Sbjct 126386 TTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGCTCTACTTCAAGGGTGATTGT 126445 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || || || || ||||| || ||||| Sbjct 126446 CTTACCAGTTAAGGTCTTCACAAAGATCTGCAT 126478 >seq73 Length=15502039 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||||||| | ||||||||||| | || ||| | |||| Sbjct 8773997 AGGACCAAGTGCAGGGTAGATTCTTTTGGGATGTTGTAGTCAGACAGTGTACGCCCATCT 8774056 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 | || ||||| || ||| |||| | ||| | || || ||| | ||||||||| || Sbjct 8774057 TACAGATGTTTCCCAGCAAAGATCAATCTCCGCTGGTCAGGGGGGATGCCTTCCTTGTCT 8774116 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| |||||| ||||| ||||||| | Sbjct 8774117 TGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTC 8774176 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| || || ||||| || ||||| Sbjct 8774177 TTACTGGTCAAGGTCTTCACAAAGATCTGCAT 8774208 >seq143 Length=9160510 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || |||||||| || ||||||||||| | || ||| ||| Sbjct 9115208 AGGACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGCTTGTCT 9115149 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | ||| || || || || | |||||| || || Sbjct 9115148 TCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCT 9115089 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | |||| ||||| | ||| ||||||| |||||| ||||| ||| ||| | Sbjct 9115088 TGAATCT-TTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGT 9115030 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || ||||| ||||| || || || ||||| Sbjct 9115029 CTTACCAGTCAAGGTTTTCACGAAGATCTGCAT 9114997 >seq64 Length=17089795 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| || | ||| || ||||| ||||| | |||||||| || | | || | ||| Sbjct 15771250 AAGGACAAAGTGCAGAGTTGACTCTTTCTAGATGTTGTAATCAGAAAGAGTACGGCCATC 15771191 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || ||||| ||| ||||||| || || || || ||| | |||||||||||| Sbjct 15771190 TTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATC 15771131 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||||| | | | ||||||| ||||| ||| | |||||| | Sbjct 15771130 CTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTAGGCTCCACTTCCTTAGTGATGGT 15771071 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| |||| | |||||||| ||||||||||| Sbjct 15771070 CTTGCCAGTCAGGATCTTTACAAAGATTTGCATTTT 15771035 >seq12 Length=37268909 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || || ||||||||||| ||||| || || | || ||| | | |||| Sbjct 28034354 AGGACCAATTGCAGCGTAGATTCTTTTTGGATGTTATAATCAGACAGTGTGTGCCCATCT 28034295 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| |||||| || ||| |||| | ||| || || || || | |||||| || || Sbjct 28034294 TCCAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCT 28034235 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | || ||||||| |||||| ||||| ||||||| || Sbjct 28034234 TGGATCTTCGCCTTGACATTTTCAGTGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTT 28034175 Query 18294 TTGCCGGTC 18302 || | |||| Sbjct 28034174 TTACTGGTC 28034166 >seq37 Length=23488536 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| || || || ||||||||||| ||||||||||| | || ||| | ||| Sbjct 16715714 AAGGACCAAGTACAGGGTAGATTCTTTTTGGATGTTGTAGTCAGGCAGTGTACACCCATC 16715773 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| ||||| || ||| |||| | ||| || || || || | |||||| || || Sbjct 16715774 TTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTC 16715833 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||||| | ||| |||| || |||||| ||||| ||||||| | Sbjct 16715834 TTGGATCTTCACCTTGACATTCTCAATGGTGTTACTGGGCTCTACTTCAAGGGTGATGGT 16715893 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | | |||||| || || || | || ||||| Sbjct 16715894 CTCACAGGTCAAGGTCTTCACGGAGATCTGCAT 16715926 >seq13 Length=36266773 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||| || || |||| ||| || ||||||||||| | | || | ||| Sbjct 31101121 AAGGACCAGGTGCAGGGTGGATTATTTCTGGATGTTGTAGTCAGATAGGGTACGTCCATC 31101180 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| ||||| || ||| |||| | ||| | || || ||| | |||||| || || Sbjct 31101181 TTCCAGCTGTTTCCCAGCAAAGATCAATCTCTCCTGGTCAGGGGGGATGCCTTCTTTGTC 31101240 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||||| | | ||| ||||||| |||||| | ||||| ||| ||| | Sbjct 31101241 TTGGATCTTCGCCTTGACATTTTCAATGGTGTCACTGGGCTCTGCTTCAAAGGTTATGGT 31101300 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || ||||| || || | || || ||||| Sbjct 31101301 CTTACCAGTCAAGGTCTTCGCGAAGATCTGCAT 31101333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379249223272500