Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq281 104 2e-17
seq73 104 2e-17
seq143 98.7 8e-16
seq64 93.3 3e-14
seq12 89.7 4e-13
seq37 87.8 1e-12
seq13 87.8 1e-12
>seq281
Length=3633602
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || ||||||||||| ||||||||||| | || ||| | ||||
Sbjct 114464 AGGACCAAGTGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGACAGTGTACGCCCATCT 114523
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| ||||| || ||| |||| | || || || || ||| | |||||||| ||
Sbjct 114524 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGGATACCTTCCTTGTCT 114583
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | |||||| | ||| ||||||| |||||| ||||| ||||||| |
Sbjct 114584 TGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTC 114643
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| || ||||| || || || || || |||||
Sbjct 114644 TTACCAGTCAAGGTCTTCACGAAGATCTGCAT 114675
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
||| |||| ||| || || |||||||| || ||||||||||| | || || | |||
Sbjct 126266 AAGGACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATC 126325
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
||||| || || || ||| |||| | || ||||| || ||| | ||||||||| ||
Sbjct 126326 TTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGTTGGTCAGGGGGGATGCCTTCCTTGTC 126385
Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
|| | | |||||| | ||| ||||||| ||||| ||||| |||||| |
Sbjct 126386 TTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGCTCTACTTCAAGGGTGATTGT 126445
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| || || || || || ||||| || |||||
Sbjct 126446 CTTACCAGTTAAGGTCTTCACAAAGATCTGCAT 126478
>seq73
Length=15502039
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || ||||||||| | ||||||||||| | || ||| | ||||
Sbjct 8773997 AGGACCAAGTGCAGGGTAGATTCTTTTGGGATGTTGTAGTCAGACAGTGTACGCCCATCT 8774056
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
| || ||||| || ||| |||| | ||| | || || ||| | ||||||||| ||
Sbjct 8774057 TACAGATGTTTCCCAGCAAAGATCAATCTCCGCTGGTCAGGGGGGATGCCTTCCTTGTCT 8774116
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | |||||| | ||| ||||||| |||||| ||||| ||||||| |
Sbjct 8774117 TGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTC 8774176
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | |||||| || || ||||| || |||||
Sbjct 8774177 TTACTGGTCAAGGTCTTCACAAAGATCTGCAT 8774208
>seq143
Length=9160510
Score = 98.7 bits (108), Expect = 8e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || |||||||| || ||||||||||| | || ||| |||
Sbjct 9115208 AGGACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGCTTGTCT 9115149
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| ||||| || ||| |||| | ||| || || || || | |||||| || ||
Sbjct 9115148 TCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCT 9115089
Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
||| | |||| ||||| | ||| ||||||| |||||| ||||| ||| ||| |
Sbjct 9115088 TGAATCT-TTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGT 9115030
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| || ||||| ||||| || || || |||||
Sbjct 9115029 CTTACCAGTCAAGGTTTTCACGAAGATCTGCAT 9114997
>seq64
Length=17089795
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
||| || | ||| || ||||| ||||| | |||||||| || | | || | |||
Sbjct 15771250 AAGGACAAAGTGCAGAGTTGACTCTTTCTAGATGTTGTAATCAGAAAGAGTACGGCCATC 15771191
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
||||| || ||||| ||| ||||||| || || || || ||| | ||||||||||||
Sbjct 15771190 TTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATC 15771131
Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
|| | |||||| | | | ||||||| ||||| ||| | |||||| |
Sbjct 15771130 CTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTAGGCTCCACTTCCTTAGTGATGGT 15771071
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
||||| |||| | |||||||| |||||||||||
Sbjct 15771070 CTTGCCAGTCAGGATCTTTACAAAGATTTGCATTTT 15771035
>seq12
Length=37268909
Score = 89.7 bits (98), Expect = 4e-13
Identities = 133/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| || || || ||||||||||| ||||| || || | || ||| | | ||||
Sbjct 28034354 AGGACCAATTGCAGCGTAGATTCTTTTTGGATGTTATAATCAGACAGTGTGTGCCCATCT 28034295
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| |||||| || ||| |||| | ||| || || || || | |||||| || ||
Sbjct 28034294 TCCAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCT 28034235
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | |||||| | | || ||||||| |||||| ||||| ||||||| ||
Sbjct 28034234 TGGATCTTCGCCTTGACATTTTCAGTGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTT 28034175
Query 18294 TTGCCGGTC 18302
|| | ||||
Sbjct 28034174 TTACTGGTC 28034166
>seq37
Length=23488536
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
||| |||| || || || ||||||||||| ||||||||||| | || ||| | |||
Sbjct 16715714 AAGGACCAAGTACAGGGTAGATTCTTTTTGGATGTTGTAGTCAGGCAGTGTACACCCATC 16715773
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
||||| ||||| || ||| |||| | ||| || || || || | |||||| || ||
Sbjct 16715774 TTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTC 16715833
Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
|| | |||||| | ||| |||| || |||||| ||||| ||||||| |
Sbjct 16715834 TTGGATCTTCACCTTGACATTCTCAATGGTGTTACTGGGCTCTACTTCAAGGGTGATGGT 16715893
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
| | |||||| || || || | || |||||
Sbjct 16715894 CTCACAGGTCAAGGTCTTCACGGAGATCTGCAT 16715926
>seq13
Length=36266773
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172
||| |||| ||| || || |||| ||| || ||||||||||| | | || | |||
Sbjct 31101121 AAGGACCAGGTGCAGGGTGGATTATTTCTGGATGTTGTAGTCAGATAGGGTACGTCCATC 31101180
Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
||||| ||||| || ||| |||| | ||| | || || ||| | |||||| || ||
Sbjct 31101181 TTCCAGCTGTTTCCCAGCAAAGATCAATCTCTCCTGGTCAGGGGGGATGCCTTCTTTGTC 31101240
Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292
|| | |||||| | | ||| ||||||| |||||| | ||||| ||| ||| |
Sbjct 31101241 TTGGATCTTCGCCTTGACATTTTCAATGGTGTCACTGGGCTCTGCTTCAAAGGTTATGGT 31101300
Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| || ||||| || || | || || |||||
Sbjct 31101301 CTTACCAGTCAAGGTCTTCGCGAAGATCTGCAT 31101333
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379249223272500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |