Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq260 132 4e-26
seq140 123 2e-23
seq104 105 6e-18
seq38 100 3e-16
seq87 96.9 3e-15
seq20 96.9 3e-15
seq16 93.3 4e-14
seq46 91.5 1e-13
seq73 86.0 6e-12
seq346 84.2 2e-11
seq40 84.2 2e-11
seq3 84.2 2e-11
seq281 82.4 7e-11
seq59 82.4 7e-11
>seq260
Length=4071714
Score = 132 bits (146), Expect = 4e-26
Identities = 241/349 (69%), Gaps = 8/349 (2%)
Strand=Plus/Plus
Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566
||||||||| | || ||| ||||| | | | |||||| | ||||| |||||||| |
Sbjct 1909146 GATGAACCATTGCTGAGAGAAAATCCTCTTCGCTTTGTCTTCTTTCCTATTGAATACCAT 1909205
Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626
|| |||| | |||||||| || || || || || ||||| ||||| || || || ||
Sbjct 1909206 GATATTTTTCAGATGTACAAGAAAGCTGAGGCTTCCTTTTGTACCGTGGAGGAGGTGGAT 1909265
Query 57627 CTGTCTAAGGATCTG-AGCGATTGGGATTCCCTCAAAGAATCTGAG---AGAAATTTTAT 57682
|| |||||||| | ||| | || || ||| || ||||| ||| | || ||
Sbjct 1909266 CTTTCTAAGGACATTCAGC-ACTGAGAAGCCCGGAAGC---CTGAGGACAGACACTTCAT 1909321
Query 57683 TAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGA 57742
| |||| |||| || || || ||| ||||| || || || || || ||||| ||
Sbjct 1909322 ATCATACGTACTGGCATTCTTTGCAGCAAATGATGGCATAGTGAATGAAAACTTGGTGGA 1909381
Query 57743 AAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGC 57802
||||| |||||||| || || || || || | || || || || || ||| | |
Sbjct 1909382 GCGATTTAGCCAAGAAGTTCATGTTACAGAAGCCTGCTGTTTCTATGGCTTCCAAATTTC 1909441
Query 57803 CATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTAC 57851
|||||||||| | ||||| ||||||||| || || || || || |||
Sbjct 1909442 CATTGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACACTTAC 1909490
>seq140
Length=9235476
Score = 123 bits (136), Expect = 2e-23
Identities = 118/151 (78%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105
||||||| |||||| || |||||||| ||||| || || || ||||| || || ||||
Sbjct 5949778 CCACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCG 5949837
Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165
| |||| || ||||||||| || ||||| || ||||| ||||||||||||||||| |
Sbjct 5949838 TTCCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGG 5949897
Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196
| || ||||| ||| ||||| ||||| ||
Sbjct 5949898 TACCTGTCTCTGTCTGAGACTCAATGATGGC 5949928
>seq104
Length=11152936
Score = 105 bits (116), Expect = 6e-18
Identities = 164/233 (70%), Gaps = 1/233 (0%)
Strand=Plus/Plus
Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246
||||| ||||| || || |||||||| ||||| | ||| || |||||| | || || ||
Sbjct 9999363 TCAAA-ATGCAGATCTTTGTAAAGACCCTGACTGTCAAGACCATCACCCTGGAAGTGGAG 9999421
Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306
|| |||| |||| | ||||| | || ||||||||||||| | || ||
Sbjct 9999422 CCCAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCT 9999481
Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366
||||||||| | || || || || ||||| ||| ||||||| ||| | |||
Sbjct 9999482 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 9999541
Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| ||||| || ||||| || ||||| || || || ||| | |||||||| ||
Sbjct 9999542 TACAACATCCAGAAAGAGTCAACTCTGCACCTTGTCCTTCGTCTGAGGGGTGG 9999594
>seq38
Length=23493148
Score = 100 bits (110), Expect = 3e-16
Identities = 157/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||| |||| || ||||| || || |||||||| |||| || ||||
Sbjct 5891101 AAGATGCAGATTTTCTTAAAAACCCTGACGGGGAAGACGATCACTCTCGAGGTCAAACCC 5891042
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | |||||| || || | || ||| |||||||| | || || ||
Sbjct 5891041 TCGGATACGATCGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 5890982
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
|||||| | || || || |||||||| || ||||||| | | | || || || ||
Sbjct 5890981 CAGCAGAGACTGATTTTTGCTGGCAAGCAACTGGAAGA-TGGACGCACCCTGTCTGACTA 5890923
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || || ||||||||||| || | |||||
Sbjct 5890922 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 5890881
>seq87
Length=12919766
Score = 96.9 bits (106), Expect = 3e-15
Identities = 156/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| ||||| ||||| | || ||||| || |||||||| |||| || ||||
Sbjct 9400337 AAGATGCAGATTTTTGTAAAAGCCCTAACAGGGAAGACGATCACTCTCGAGGTCGAACGC 9400278
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | |||||| || || | || ||| |||||||| | || || ||
Sbjct 9400277 TCGGATACAATCGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 9400218
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
|||||| | || || || |||||||| || ||||| | | ||| || || || ||
Sbjct 9400217 CAGCAGAGACTGATTTTTGCTGGCAAGCAACTGGAAAA-TGGATGCACCCTGTCTGACTA 9400159
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || || ||||||||||| || | |||||
Sbjct 9400158 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 9400117
>seq20
Length=29555478
Score = 96.9 bits (106), Expect = 3e-15
Identities = 156/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| ||||||||||| || || || || || |||||||| |||| || |||||
Sbjct 26627854 AAGATGCAGATTTTCGTAAAAACCCTAACGGGGAAGACGATCACTCTCGAGGTCGAACCC 26627913
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | |||||| || || | || | | |||||||| | || || ||
Sbjct 26627914 TCAGATACAATCGAAAATGTAAAGGCCAAGATCCAGCATAAGGAAGGAATTCCTCCTGAT 26627973
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
|||||| | || || || |||||| | || ||||||| | | | || || || ||
Sbjct 26627974 CAGCAGAGACTGATTTTTGCTGGCGAGCAACTGGAAGA-TGGACGCACCCTGTCTGACTA 26628032
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || || ||||||||||| || | |||||
Sbjct 26628033 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 26628074
>seq16
Length=33020160
Score = 93.3 bits (102), Expect = 4e-14
Identities = 157/225 (70%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246
|| || ||||| ||||||||||| | || || || || |||||||| |||| || |||
Sbjct 11073986 TCCAAGATGCAGATTTTCGTAAAAAACCTAACGGGGAAGACGATCACTCTCGAGGTCGAA 11074045
Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306
|| || || | || ||| || || | || ||| |||||||| | || ||
Sbjct 11074046 CCCTCAGATACAATCAAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCT 11074105
Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGA 31365
|| |||||| | || || || ||||| || || ||||||| | | | || || ||
Sbjct 11074106 GATCAGCAGAGACTGATTTTTGCTGGTAAGCAACTGGAAGA-TGGACGCACCCTGTCTGA 11074164
Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
|| ||||||||||| || || ||||||||||| || | |||||
Sbjct 11074165 CTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 11074209
>seq46
Length=21197313
Score = 91.5 bits (100), Expect = 1e-13
Identities = 155/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| ||||||||| | || || || || ||||| ||||| |||| || ||| |
Sbjct 15668433 AAGATGCAGATTTTCGTACAAACCCTAACGGGAAAAACAATCACTTTCGAGGTCGAAACC 15668374
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| |||| |||||| || || || || ||| |||||| | | || | ||
Sbjct 15668373 TCGGACACGATCGAAAATGTAAAGGCGAAGATCCAGGATAAGGAAAGAATTCCTACTGAT 15668314
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
|||||| | || || || |||||||| || ||||||| | | | | || || ||
Sbjct 15668313 CAGCAGAGACTGATTTTTGCTGGCAAGCAACTGGAAGA-TGGACGCAACCTGTCTGACTA 15668255
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || || ||||||||||| || | |||||
Sbjct 15668254 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 15668213
>seq73
Length=15502039
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| |||| || || || |||||| | || || || ||
Sbjct 8774436 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTTGAAGTAGAGCCCAGT 8774377
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | ||||| || | |||||||||||| | | || ||||||
Sbjct 8774376 GACACCATTGAGAATGTCAAGGCGAAGCTCCAAGACAAGGAAGGCATTCTCCCTGACCAG 8774317
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | || || ||||| |||||| ||||||| || || ||||| |||
Sbjct 8774316 CAGAGATTGATCTTTGCTGGGAAACAGCTGGAAGATGGCCGTACCCTGTCTGATTACAAC 8774257
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || |||||||| || || || ||||| ||| | ||||| || ||
Sbjct 8774256 ATCCAGAAAGAATCCACCCTGCAACTGGTCCTTCGTCTGAGAGGGGG 8774210
>seq346
Length=2583767
Score = 84.2 bits (92), Expect = 2e-11
Identities = 116/161 (72%), Gaps = 1/161 (1%)
Strand=Plus/Minus
Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246
||||| ||||| || || |||||||| ||||| ||||| || |||||| | || || ||
Sbjct 511455 TCAAA-ATGCAGATCTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAG 511397
Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306
|| |||| | || | ||||| | || ||||||||||||| | || ||
Sbjct 511396 CCCAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCT 511337
Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||||||| | || || || || ||||| ||| |||||||
Sbjct 511336 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGA 511296
>seq40
Length=22442042
Score = 84.2 bits (92), Expect = 2e-11
Identities = 116/161 (72%), Gaps = 1/161 (1%)
Strand=Plus/Plus
Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246
||||| ||||| || || |||||||| ||||| ||||| || |||||| | || || ||
Sbjct 9523551 TCAAA-ATGCAGATCTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAG 9523609
Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306
|| |||| | || | ||||| | || ||||||||||||| | || ||
Sbjct 9523610 CCCAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCT 9523669
Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||||||||| | || || || || ||||| ||| |||||||
Sbjct 9523670 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGA 9523710
>seq3
Length=52730029
Score = 84.2 bits (92), Expect = 2e-11
Identities = 152/221 (69%), Gaps = 1/221 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||| |||| || || || || || |||||||| || | || |||||
Sbjct 39783296 AAGATGCAGATTTTCATAAAAACGCTAACGGGGAAGACGATCACTCTCAAGGTCGAACCC 39783237
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || || | |||| || || | || ||| |||||||| | || || ||
Sbjct 39783236 TCGGATAGA-TGGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 39783178
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||| | || || | |||||||| || ||||||| || || || ||
Sbjct 39783177 CAGCAGAGACTGATTTCTGCTGGCAAGCAACTGGAAGATGGACACACCCTGTCTGACTAC 39783118
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || || ||||||||||| || | |||||
Sbjct 39783117 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 39783077
>seq281
Length=3633602
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| |||| || || || |||||| | || || || ||
Sbjct 114675 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTTGAAGTAGAGCCCAGT 114616
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | ||||| || || ||||||||||| | || || ||||||
Sbjct 114615 GACACCATTGAGAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAG 114556
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | || || ||||| |||||| ||||||| || || || || |||
Sbjct 114555 CAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGGCGTACACTGTCTGACTACAAC 114496
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|| ||||||||||| || || || |||| || | ||||||| |||
Sbjct 114495 ATCCAAAAAGAATCTACCCTGCACTTGGTCCTCCGTTTGAGGGGAGGT 114448
>seq59
Length=18190503
Score = 82.4 bits (90), Expect = 7e-11
Identities = 149/214 (70%), Gaps = 3/214 (1%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAG-GCAAAACGATCACCGTCGACGTTGAACC 31248
|| ||| | ||||||||||| ||||| |||| | || |||||||| |||| || |||
Sbjct 6110150 AAGATGAAGATTTTCGTAAAAACTCTAACAGAGGAAGACGATCACTCTCGAGGTCGAATT 6110091
Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
| || | |||||| || || | || ||| |||||||| | || || |
Sbjct 6110090 CTGGGATACGATCGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTCA 6110031
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367
|||||| | || || || |||||||| || ||||||| | | | || || || |
Sbjct 6110030 TCAGCAGAGACTGATTTTTGCTGGCAAGCAACTGGAAGA-TGGACGCACCCTGTCTGACT 6109972
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401
| ||||||||||| || || ||||||||||| ||
Sbjct 6109971 ACAACATTCAAAAGGAGTCCACTCTTCATCTTGT 6109938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445652172360000
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