Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq260 132 4e-26 seq140 123 2e-23 seq104 105 6e-18 seq38 100 3e-16 seq87 96.9 3e-15 seq20 96.9 3e-15 seq16 93.3 4e-14 seq46 91.5 1e-13 seq73 86.0 6e-12 seq346 84.2 2e-11 seq40 84.2 2e-11 seq3 84.2 2e-11 seq281 82.4 7e-11 seq59 82.4 7e-11 >seq260 Length=4071714 Score = 132 bits (146), Expect = 4e-26 Identities = 241/349 (69%), Gaps = 8/349 (2%) Strand=Plus/Plus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 ||||||||| | || ||| ||||| | | | |||||| | ||||| |||||||| | Sbjct 1909146 GATGAACCATTGCTGAGAGAAAATCCTCTTCGCTTTGTCTTCTTTCCTATTGAATACCAT 1909205 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || |||| | |||||||| || || || || || ||||| ||||| || || || || Sbjct 1909206 GATATTTTTCAGATGTACAAGAAAGCTGAGGCTTCCTTTTGTACCGTGGAGGAGGTGGAT 1909265 Query 57627 CTGTCTAAGGATCTG-AGCGATTGGGATTCCCTCAAAGAATCTGAG---AGAAATTTTAT 57682 || |||||||| | ||| | || || ||| || ||||| ||| | || || Sbjct 1909266 CTTTCTAAGGACATTCAGC-ACTGAGAAGCCCGGAAGC---CTGAGGACAGACACTTCAT 1909321 Query 57683 TAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGA 57742 | |||| |||| || || || ||| ||||| || || || || || ||||| || Sbjct 1909322 ATCATACGTACTGGCATTCTTTGCAGCAAATGATGGCATAGTGAATGAAAACTTGGTGGA 1909381 Query 57743 AAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGC 57802 ||||| |||||||| || || || || || | || || || || || ||| | | Sbjct 1909382 GCGATTTAGCCAAGAAGTTCATGTTACAGAAGCCTGCTGTTTCTATGGCTTCCAAATTTC 1909441 Query 57803 CATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTAC 57851 |||||||||| | ||||| ||||||||| || || || || || ||| Sbjct 1909442 CATTGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACACTTAC 1909490 >seq140 Length=9235476 Score = 123 bits (136), Expect = 2e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||||| |||||| || |||||||| ||||| || || || ||||| || || |||| Sbjct 5949778 CCACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCG 5949837 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || ||||||||| || ||||| || ||||| ||||||||||||||||| | Sbjct 5949838 TTCCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGG 5949897 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | || ||||| ||| ||||| ||||| || Sbjct 5949898 TACCTGTCTCTGTCTGAGACTCAATGATGGC 5949928 >seq104 Length=11152936 Score = 105 bits (116), Expect = 6e-18 Identities = 164/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || || |||||||| ||||| | ||| || |||||| | || || || Sbjct 9999363 TCAAA-ATGCAGATCTTTGTAAAGACCCTGACTGTCAAGACCATCACCCTGGAAGTGGAG 9999421 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| |||| | ||||| | || ||||||||||||| | || || Sbjct 9999422 CCCAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCT 9999481 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGAT 31366 ||||||||| | || || || || ||||| ||| ||||||| ||| | ||| Sbjct 9999482 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAT 9999541 Query 31367 TATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || ||||| || ||||| || || || ||| | |||||||| || Sbjct 9999542 TACAACATCCAGAAAGAGTCAACTCTGCACCTTGTCCTTCGTCTGAGGGGTGG 9999594 >seq38 Length=23493148 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||| |||| || ||||| || || |||||||| |||| || |||| Sbjct 5891101 AAGATGCAGATTTTCTTAAAAACCCTGACGGGGAAGACGATCACTCTCGAGGTCAAACCC 5891042 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||||| || || | || ||| |||||||| | || || || Sbjct 5891041 TCGGATACGATCGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 5890982 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 |||||| | || || || |||||||| || ||||||| | | | || || || || Sbjct 5890981 CAGCAGAGACTGATTTTTGCTGGCAAGCAACTGGAAGA-TGGACGCACCCTGTCTGACTA 5890923 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 5890922 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 5890881 >seq87 Length=12919766 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| ||||| | || ||||| || |||||||| |||| || |||| Sbjct 9400337 AAGATGCAGATTTTTGTAAAAGCCCTAACAGGGAAGACGATCACTCTCGAGGTCGAACGC 9400278 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||||| || || | || ||| |||||||| | || || || Sbjct 9400277 TCGGATACAATCGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 9400218 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 |||||| | || || || |||||||| || ||||| | | ||| || || || || Sbjct 9400217 CAGCAGAGACTGATTTTTGCTGGCAAGCAACTGGAAAA-TGGATGCACCCTGTCTGACTA 9400159 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 9400158 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 9400117 >seq20 Length=29555478 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||||||||| || || || || || |||||||| |||| || ||||| Sbjct 26627854 AAGATGCAGATTTTCGTAAAAACCCTAACGGGGAAGACGATCACTCTCGAGGTCGAACCC 26627913 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||||| || || | || | | |||||||| | || || || Sbjct 26627914 TCAGATACAATCGAAAATGTAAAGGCCAAGATCCAGCATAAGGAAGGAATTCCTCCTGAT 26627973 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 |||||| | || || || |||||| | || ||||||| | | | || || || || Sbjct 26627974 CAGCAGAGACTGATTTTTGCTGGCGAGCAACTGGAAGA-TGGACGCACCCTGTCTGACTA 26628032 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 26628033 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 26628074 >seq16 Length=33020160 Score = 93.3 bits (102), Expect = 4e-14 Identities = 157/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 || || ||||| ||||||||||| | || || || || |||||||| |||| || ||| Sbjct 11073986 TCCAAGATGCAGATTTTCGTAAAAAACCTAACGGGGAAGACGATCACTCTCGAGGTCGAA 11074045 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || || || | || ||| || || | || ||| |||||||| | || || Sbjct 11074046 CCCTCAGATACAATCAAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCT 11074105 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGA 31365 || |||||| | || || || ||||| || || ||||||| | | | || || || Sbjct 11074106 GATCAGCAGAGACTGATTTTTGCTGGTAAGCAACTGGAAGA-TGGACGCACCCTGTCTGA 11074164 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||||||||| || || ||||||||||| || | ||||| Sbjct 11074165 CTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 11074209 >seq46 Length=21197313 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||||||| | || || || || ||||| ||||| |||| || ||| | Sbjct 15668433 AAGATGCAGATTTTCGTACAAACCCTAACGGGAAAAACAATCACTTTCGAGGTCGAAACC 15668374 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||||| || || || || ||| |||||| | | || | || Sbjct 15668373 TCGGACACGATCGAAAATGTAAAGGCGAAGATCCAGGATAAGGAAAGAATTCCTACTGAT 15668314 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 |||||| | || || || |||||||| || ||||||| | | | | || || || Sbjct 15668313 CAGCAGAGACTGATTTTTGCTGGCAAGCAACTGGAAGA-TGGACGCAACCTGTCTGACTA 15668255 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 15668254 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 15668213 >seq73 Length=15502039 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || |||||| | || || || || Sbjct 8774436 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTTGAAGTAGAGCCCAGT 8774377 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || | |||||||||||| | | || |||||| Sbjct 8774376 GACACCATTGAGAATGTCAAGGCGAAGCTCCAAGACAAGGAAGGCATTCTCCCTGACCAG 8774317 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| |||||| ||||||| || || ||||| ||| Sbjct 8774316 CAGAGATTGATCTTTGCTGGGAAACAGCTGGAAGATGGCCGTACCCTGTCTGATTACAAC 8774257 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || |||||||| || || || ||||| ||| | ||||| || || Sbjct 8774256 ATCCAGAAAGAATCCACCCTGCAACTGGTCCTTCGTCTGAGAGGGGG 8774210 >seq346 Length=2583767 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/161 (72%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || || |||||||| ||||| ||||| || |||||| | || || || Sbjct 511455 TCAAA-ATGCAGATCTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAG 511397 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| | || | ||||| | || ||||||||||||| | || || Sbjct 511396 CCCAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCT 511337 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| | || || || || ||||| ||| ||||||| Sbjct 511336 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGA 511296 >seq40 Length=22442042 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/161 (72%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 31187 TCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAA 31246 ||||| ||||| || || |||||||| ||||| ||||| || |||||| | || || || Sbjct 9523551 TCAAA-ATGCAGATCTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTAGAG 9523609 Query 31247 CCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCC 31306 || |||| | || | ||||| | || ||||||||||||| | || || Sbjct 9523610 CCCAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCT 9523669 Query 31307 GACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||||| | || || || || ||||| ||| ||||||| Sbjct 9523670 GACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGA 9523710 >seq3 Length=52730029 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/221 (69%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||| |||| || || || || || |||||||| || | || ||||| Sbjct 39783296 AAGATGCAGATTTTCATAAAAACGCTAACGGGGAAGACGATCACTCTCAAGGTCGAACCC 39783237 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || || | |||| || || | || ||| |||||||| | || || || Sbjct 39783236 TCGGATAGA-TGGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 39783178 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || | |||||||| || ||||||| || || || || Sbjct 39783177 CAGCAGAGACTGATTTCTGCTGGCAAGCAACTGGAAGATGGACACACCCTGTCTGACTAC 39783118 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || || ||||||||||| || | ||||| Sbjct 39783117 AACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACT 39783077 >seq281 Length=3633602 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || |||||| | || || || || Sbjct 114675 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTTGAAGTAGAGCCCAGT 114616 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| || || ||||||||||| | || || |||||| Sbjct 114615 GACACCATTGAGAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCCCCTGACCAG 114556 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| |||||| ||||||| || || || || ||| Sbjct 114555 CAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGGCGTACACTGTCTGACTACAAC 114496 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || ||||||||||| || || || |||| || | ||||||| ||| Sbjct 114495 ATCCAAAAAGAATCTACCCTGCACTTGGTCCTCCGTTTGAGGGGAGGT 114448 >seq59 Length=18190503 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAG-GCAAAACGATCACCGTCGACGTTGAACC 31248 || ||| | ||||||||||| ||||| |||| | || |||||||| |||| || ||| Sbjct 6110150 AAGATGAAGATTTTCGTAAAAACTCTAACAGAGGAAGACGATCACTCTCGAGGTCGAATT 6110091 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 | || | |||||| || || | || ||| |||||||| | || || | Sbjct 6110090 CTGGGATACGATCGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTCA 6110031 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367 |||||| | || || || |||||||| || ||||||| | | | || || || | Sbjct 6110030 TCAGCAGAGACTGATTTTTGCTGGCAAGCAACTGGAAGA-TGGACGCACCCTGTCTGACT 6109972 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 | ||||||||||| || || ||||||||||| || Sbjct 6109971 ACAACATTCAAAAGGAGTCCACTCTTCATCTTGT 6109938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445652172360000