Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3 122 2e-22 seq4595 91.5 3e-13 seq131 87.8 4e-12 seq58 87.8 4e-12 seq109 86.0 1e-11 >seq3 Length=52730029 Score = 122 bits (134), Expect = 2e-22 Identities = 290/435 (67%), Gaps = 5/435 (1%) Strand=Plus/Minus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 |||||||| ||||| ||| ||||||||| | |||| |||| ||||| || |||||| || Sbjct 13969008 GCCTTTGCAGCAGTGGAAAGAATCTTCTATTCTGGTTCATTTGCATCAATATTCTGGCTC 13968949 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 || || | || |||||||||| || | |||||||| | ||| || || || Sbjct 13968948 AATAAGTGAGGACCAATGCCTGGTCTGACATTTTCCAATGACCTTATTAGCAGAGATGAG 13968889 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCA 102100 ||| | || | |||||||| ||| | |||| ||| | | | | | || || Sbjct 13968888 GGTTTGCACTGTGACTTTGCCTGCCTAATGTTCAAACACC---TGCTACACAAACCTTCG 13968832 Query 102101 AGAGAAAGGATTCTT-GAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCAC 102159 ||| | || | ||||| | | | | || || | | ||| | || ||||| || Sbjct 13968831 -GAGCAGAGAGTAAAAGAAATAATTATTAATGCTGTTAGGCTAGAATAGGAGTTTCTTAC 13968773 Query 102160 AGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGA 102219 | || ||||||| ||||| | |||||||| |||| || |||| ||||||||| Sbjct 13968772 TGAGGCCTTGCCTGTGAAATTTATCGGAATGAATTGCACTTTAATGAAGTGGTACATTGA 13968713 Query 102220 ATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACCAA 102279 |||||||||||| | || | || | ||| |||| | | ||| | || || || Sbjct 13968712 ATTTGTGGCAGACAGACCAATGCTGGAACTGGGTTTTAATAAGATGTTCAAAGTAGAAAA 13968653 Query 102280 CCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGAG 102339 || || |||||||| |||| ||| || || |||| ||||| | ||| || || Sbjct 13968652 TCCATTTGACTTCATGGAGAATAATTCACTGGAAGGGCAGACTAACTTCTGTGAGAAAAG 13968593 Query 102340 AGTCGCCGAGTATCA 102354 ||| | ||| ||||| Sbjct 13968592 AGTAGGCGAATATCA 13968578 >seq4595 Length=7281 Score = 91.5 bits (100), Expect = 3e-13 Identities = 118/162 (73%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||| ||||| ||||||||||||||| |||| | || ||||| || |||| Sbjct 6459 TTGTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCT 6518 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCC-AATGAGTTCATTTCTAGG 102034 || ||||||| | | || |||||||||| || | ||| ||||| | ||| || Sbjct 6519 GGCTCAAGAAATGAGAACTTATGCCTGGTCTGACATTTTCCAAATGAACTTATTAGCAGA 6578 Query 102035 GACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAA 102076 | || ||| | || | ||| |||| ||| | |||| ||| Sbjct 6579 GGTGAGGGTTTGCACTGTGACATTGCTTGCCTAGTGTTCAAA 6620 >seq131 Length=9795181 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||| ||||| ||||||||||||||| |||| | || ||||| || |||| Sbjct 9778617 TTGTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCT 9778558 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || ||||||| | || | |||||||||| || | || ||||| Sbjct 9778557 GGCTCAAGAAGCGAGGACTAATGCCTGGTCTGACATTTTCTAATGA 9778512 >seq58 Length=18876681 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||| ||||| ||||||||||||||| |||| | || ||||| || |||| Sbjct 18847568 TTGTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCT 18847627 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || ||||||| | || | |||||||||| || | || ||||| Sbjct 18847628 GGCTCAAGAAGCGAGGACTAATGCCTGGTCTGACATTTTCTAATGA 18847673 >seq109 Length=11202510 Score = 86.0 bits (94), Expect = 1e-11 Identities = 160/230 (70%), Gaps = 9/230 (4%) Strand=Plus/Minus Query 35223 TTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGT 35282 |||| | || || |||||| | | ||||||| ||| ||| ||||||| | ||||| Sbjct 646744 TTCCTCTGCTGACAACCAAGCATGTGTTCTGGAAAGGTGTTTTGGAAGAGTTGCTGTGGT 646685 Query 35283 TCATCAGGGGCAATACAGACGCCAAAGAATTG---GCCAAGAAGAAGATACACATCTGGA 35339 | |||| ||| || | || |||||| || ||||| || || | | |||||| Sbjct 646684 TTATCAAGGGATCCACCAATGCTAAAGAACTGTCTGCCAA--AGGAGTGAAA-ATCTGGG 646628 Query 35340 ACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAG 35399 | || |||||||| || || |||||||| || || || || || ||| |||| Sbjct 646627 ATGCCAATGGGTCTCGAGACTTTTTGGATAGCCTGGGATTC-ACCATCCG--AGAAGGAG 646571 Query 35400 ATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT 35449 ||||||| || || || || || || ||| | |||||||| || |||||| Sbjct 646570 ATTTGGGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCAGAATAT 646521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989324079577500