Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq4595 123 2e-23 seq260 111 1e-19 seq1663 82.4 5e-11 seq3 82.4 5e-11 >seq4595 Length=7281 Score = 123 bits (136), Expect = 2e-23 Identities = 383/573 (67%), Gaps = 51/573 (9%) Strand=Plus/Plus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||||||||| || | || || ||||||| || |||| ||||||||||| ||| || Sbjct 6061 ATGTACAAGAAAGCTGAGGCTTCCTTTTGGATCGCTGAGAAGGTGGATCTTTTTACGGAC 6120 Query 22405 GTACGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAGGTTCATGTC-TCACAT--A 22461 | | || ||| |||| ||| ||| ||||| || | | | | |||||| | Sbjct 6121 ATTCAGCACTGG---GAAACCCTG---GAGCCTGAGAAGAGATACTTCACATCACATGTA 6174 Query 22462 CTG--GCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGT-GCAAT 22515 ||| |||||||| ||| ||| |||||||| || | ||| | ||| ||||| Sbjct 6175 CTGTGGCATTCTT-GCA---GCAAGTGATGGCATAGTGAATAAAAACTTCGTGGAGCAAT 6230 Query 22516 TTCGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCA 22575 || || || ||| || | ||| |||||||||| ||||||||| || || | | Sbjct 6231 TTAGCCAA-GAAGTTCAA---ATTACAGAAGCCAGCTGTTTCTATGGCTTCCAAATTGTC 6286 Query 22576 ATGGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGA- 22634 |||||||| |||||| |||||||||||| || || ||| ||| | | | | ||||| Sbjct 6287 ATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACAC-TGATTTG--AAAGAT 6343 Query 22635 --GAATCAAGCCGCAT---TGTTTTCAGCAGCTGAAGATATGCCATGTGTTAAAGCCAAG 22689 || || | || | ||| || |||| ||||| ||||| || ||| Sbjct 6344 TCTAAGGAAAGGGAATTTCTCTTTAATGCCATTGAAATGATGCCTTGTGTGAAGAAGAAG 6403 Query 22690 GCACAGTGGG--CTGCACAATGGCTGAAT--GCCACACATAAGT---CTATCGCAACACG 22742 ||| | |||| ||| |||| || | ||| | || | |||| | | | Sbjct 6404 GCAGATTGGGTCTTGC------GCTGGATTGGAGACAAAGAAATTACCTATGGGGA---G 6454 Query 22743 TCTCTTG--GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800 | | ||| |||||||| || || ||||| || | |||||||| || ||||| | ||| Sbjct 6455 TGTGTTGTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATA 6514 Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCC-AACGAGTTGATTAG 22859 |||||||| |||||| | || ||||| || || | |||||| || || | ||||| Sbjct 6515 TTCTGGCTCAAGAAATGAGAACTTATGCCTGGTCTGACATTTTCCAAATGAACTTATTAG 6574 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892 | | | || ||| | ||||||||| ||||||| Sbjct 6575 CAGAGGTGAGGGTTTGCACTGTGACATTGCTTG 6607 >seq260 Length=4071714 Score = 111 bits (122), Expect = 1e-19 Identities = 382/580 (66%), Gaps = 48/580 (8%) Strand=Plus/Plus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||||||||| || | || || ||||| ||||| ||||||||||||||| || || Sbjct 1909218 ATGTACAAGAAAGCTGAGGCTTCCTTTTGTACCGTGGAGGAGGTGGATCTTTCTAAGGAC 1909277 Query 22405 GTACGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAG---GTTCATGTCTCACATA 22461 | | || || |||| | || || ||||| ||| ||||| || || || Sbjct 1909278 ATTCAGCACTG---AGAAGCCCGGA---AGCCTGAGGACAGACACTTCATATCATACGTA 1909331 Query 22462 CTGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGT-GTGCAATTT 22517 ||||||||||||||| ||| |||||||| || || ||| | || | || |||| Sbjct 1909332 CTGGCATTCTTTGCA---GCAAATGATGGCATAGTGAATGAAAACTTGGTGGAGCGATTT 1909388 Query 22518 CGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAAT 22577 || ||||| || || || |||||||| | ||||||||| || || | | || Sbjct 1909389 AGC-CAAGAAGTT---CATGTTACAGAAGCCTGCTGTTTCTATGGCTTCCAAATTTCCAT 1909444 Query 22578 GGAAAATATACATGCTGAAATGTATACTCAGCTGATT----ATCACATT--AGTAGCTAA 22631 ||||| |||||| |||||||||||| || || ||| | ||||| ||| ||| Sbjct 1909445 TGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATTAAAGTTTCTA- 1909503 Query 22632 AGAGAATCAAGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAG 22689 |||| ||| || | || | || || | |||| |||||||| ||| Sbjct 1909504 --AGAA--AAGGGAATTTCTCTTTAATGCCATTGGAACGCTGCCTTGTGTTAAGAAGAAG 1909559 Query 22690 GCACAGTGGGC--TGCACAATGGCTGAAT--GCCACACATAAGTCTATC---GCAACACG 22742 ||| | ||||| ||| |||| || | ||| | ||| ||| | || || Sbjct 1909560 GCAGATTGGGCCTTGC------GCTGGATTGGGGACAAAGAAG-CTACCCATGCGGAGCG 1909612 Query 22743 TCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATT 22802 | | | |||||||| || | ||||| | | |||||| | || ||||| | |||| Sbjct 1909613 TGTTGTAGCCTTTGCAGCAATGGAAGGAATTTTCTTTTCTAGTTCTTTTGCATCAATATC 1909672 Query 22803 CTGGCTGAAGAAA-CGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCC 22861 |||||| || ||| || || ||||| || || | ||| |||| || | |||||| Sbjct 1909673 CTGGCTCAAAAAAGCGAGGACTAATGCCTGGTCTGACATTTCCCAATGAACTTATTAGCA 1909732 Query 22862 GTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901 | || || ||| | ||||||| || ||| ||| | |||| Sbjct 1909733 GAGATGAGGGTTTGCACTGTGGCTATGCCTGTCTAATGTT 1909772 >seq1663 Length=17039 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22751 CCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGA 22810 ||||||| || || ||||| || | |||||||| || ||||| | || ||||||| Sbjct 2752 CCTTTGCAGCAGTGGAAGGAATCGTCTTTTCTGGTTCTTTTGCATCAGTAATCTGGCTTG 2811 Query 22811 AGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAG 22870 |||| | || ||||| || || | |||||||| || | |||||| | || || | Sbjct 2812 AGAAGCCAGGACTAATGCCTGGTCTGACATTTTCCAATGAACTTATTAGCAGAGATGAGG 2871 Query 22871 GTCTACACTGTGACTTTGCTTGT 22893 || | |||||||||||||| ||| Sbjct 2872 GTTTGCACTGTGACTTTGCCTGT 2894 >seq3 Length=52730029 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 |||||||| || || ||| | || | | |||||| |||||||| | ||||||||||| Sbjct 13969008 GCCTTTGCAGCAGTGGAAAGAATCTTCTATTCTGGTTCATTTGCATCAATATTCTGGCTC 13968949 Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869 || || | | ||||| || || | |||||||| || | |||||| | || || Sbjct 13968948 AATAAGTGAGGACCAATGCCTGGTCTGACATTTTCCAATGACCTTATTAGCAGAGATGAG 13968889 Query 22870 GGTCTACACTGTGACTTTGCTTG 22892 ||| | |||||||||||||| || Sbjct 13968888 GGTTTGCACTGTGACTTTGCCTG 13968866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356144597261500