Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_003494.1
Length=111362
Score E
Sequences producing significant alignments: (Bits) Value
seq4595 123 2e-23
seq260 111 1e-19
seq1663 82.4 5e-11
seq3 82.4 5e-11
>seq4595
Length=7281
Score = 123 bits (136), Expect = 2e-23
Identities = 383/573 (67%), Gaps = 51/573 (9%)
Strand=Plus/Plus
Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404
||||||||||| || | || || ||||||| || |||| ||||||||||| ||| ||
Sbjct 6061 ATGTACAAGAAAGCTGAGGCTTCCTTTTGGATCGCTGAGAAGGTGGATCTTTTTACGGAC 6120
Query 22405 GTACGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAGGTTCATGTC-TCACAT--A 22461
| | || ||| |||| ||| ||| ||||| || | | | | |||||| |
Sbjct 6121 ATTCAGCACTGG---GAAACCCTG---GAGCCTGAGAAGAGATACTTCACATCACATGTA 6174
Query 22462 CTG--GCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGT-GCAAT 22515
||| |||||||| ||| ||| |||||||| || | ||| | ||| |||||
Sbjct 6175 CTGTGGCATTCTT-GCA---GCAAGTGATGGCATAGTGAATAAAAACTTCGTGGAGCAAT 6230
Query 22516 TTCGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCA 22575
|| || || ||| || | ||| |||||||||| ||||||||| || || | |
Sbjct 6231 TTAGCCAA-GAAGTTCAA---ATTACAGAAGCCAGCTGTTTCTATGGCTTCCAAATTGTC 6286
Query 22576 ATGGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGA- 22634
|||||||| |||||| |||||||||||| || || ||| ||| | | | | |||||
Sbjct 6287 ATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACAC-TGATTTG--AAAGAT 6343
Query 22635 --GAATCAAGCCGCAT---TGTTTTCAGCAGCTGAAGATATGCCATGTGTTAAAGCCAAG 22689
|| || | || | ||| || |||| ||||| ||||| || |||
Sbjct 6344 TCTAAGGAAAGGGAATTTCTCTTTAATGCCATTGAAATGATGCCTTGTGTGAAGAAGAAG 6403
Query 22690 GCACAGTGGG--CTGCACAATGGCTGAAT--GCCACACATAAGT---CTATCGCAACACG 22742
||| | |||| ||| |||| || | ||| | || | |||| | | |
Sbjct 6404 GCAGATTGGGTCTTGC------GCTGGATTGGAGACAAAGAAATTACCTATGGGGA---G 6454
Query 22743 TCTCTTG--GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATA 22800
| | ||| |||||||| || || ||||| || | |||||||| || ||||| | |||
Sbjct 6455 TGTGTTGTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATA 6514
Query 22801 TTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCC-AACGAGTTGATTAG 22859
|||||||| |||||| | || ||||| || || | |||||| || || | |||||
Sbjct 6515 TTCTGGCTCAAGAAATGAGAACTTATGCCTGGTCTGACATTTTCCAAATGAACTTATTAG 6574
Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892
| | | || ||| | ||||||||| |||||||
Sbjct 6575 CAGAGGTGAGGGTTTGCACTGTGACATTGCTTG 6607
>seq260
Length=4071714
Score = 111 bits (122), Expect = 1e-19
Identities = 382/580 (66%), Gaps = 48/580 (8%)
Strand=Plus/Plus
Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404
||||||||||| || | || || ||||| ||||| ||||||||||||||| || ||
Sbjct 1909218 ATGTACAAGAAAGCTGAGGCTTCCTTTTGTACCGTGGAGGAGGTGGATCTTTCTAAGGAC 1909277
Query 22405 GTACGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAG---GTTCATGTCTCACATA 22461
| | || || |||| | || || ||||| ||| ||||| || || ||
Sbjct 1909278 ATTCAGCACTG---AGAAGCCCGGA---AGCCTGAGGACAGACACTTCATATCATACGTA 1909331
Query 22462 CTGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGT-GTGCAATTT 22517
||||||||||||||| ||| |||||||| || || ||| | || | || ||||
Sbjct 1909332 CTGGCATTCTTTGCA---GCAAATGATGGCATAGTGAATGAAAACTTGGTGGAGCGATTT 1909388
Query 22518 CGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAAT 22577
|| ||||| || || || |||||||| | ||||||||| || || | | ||
Sbjct 1909389 AGC-CAAGAAGTT---CATGTTACAGAAGCCTGCTGTTTCTATGGCTTCCAAATTTCCAT 1909444
Query 22578 GGAAAATATACATGCTGAAATGTATACTCAGCTGATT----ATCACATT--AGTAGCTAA 22631
||||| |||||| |||||||||||| || || ||| | ||||| ||| |||
Sbjct 1909445 TGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATTAAAGTTTCTA- 1909503
Query 22632 AGAGAATCAAGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAG 22689
|||| ||| || | || | || || | |||| |||||||| |||
Sbjct 1909504 --AGAA--AAGGGAATTTCTCTTTAATGCCATTGGAACGCTGCCTTGTGTTAAGAAGAAG 1909559
Query 22690 GCACAGTGGGC--TGCACAATGGCTGAAT--GCCACACATAAGTCTATC---GCAACACG 22742
||| | ||||| ||| |||| || | ||| | ||| ||| | || ||
Sbjct 1909560 GCAGATTGGGCCTTGC------GCTGGATTGGGGACAAAGAAG-CTACCCATGCGGAGCG 1909612
Query 22743 TCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATT 22802
| | | |||||||| || | ||||| | | |||||| | || ||||| | ||||
Sbjct 1909613 TGTTGTAGCCTTTGCAGCAATGGAAGGAATTTTCTTTTCTAGTTCTTTTGCATCAATATC 1909672
Query 22803 CTGGCTGAAGAAA-CGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCC 22861
|||||| || ||| || || ||||| || || | ||| |||| || | ||||||
Sbjct 1909673 CTGGCTCAAAAAAGCGAGGACTAATGCCTGGTCTGACATTTCCCAATGAACTTATTAGCA 1909732
Query 22862 GTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTT 22901
| || || ||| | ||||||| || ||| ||| | ||||
Sbjct 1909733 GAGATGAGGGTTTGCACTGTGGCTATGCCTGTCTAATGTT 1909772
>seq1663
Length=17039
Score = 82.4 bits (90), Expect = 5e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 22751 CCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGA 22810
||||||| || || ||||| || | |||||||| || ||||| | || |||||||
Sbjct 2752 CCTTTGCAGCAGTGGAAGGAATCGTCTTTTCTGGTTCTTTTGCATCAGTAATCTGGCTTG 2811
Query 22811 AGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAG 22870
|||| | || ||||| || || | |||||||| || | |||||| | || || |
Sbjct 2812 AGAAGCCAGGACTAATGCCTGGTCTGACATTTTCCAATGAACTTATTAGCAGAGATGAGG 2871
Query 22871 GTCTACACTGTGACTTTGCTTGT 22893
|| | |||||||||||||| |||
Sbjct 2872 GTTTGCACTGTGACTTTGCCTGT 2894
>seq3
Length=52730029
Score = 82.4 bits (90), Expect = 5e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809
|||||||| || || ||| | || | | |||||| |||||||| | |||||||||||
Sbjct 13969008 GCCTTTGCAGCAGTGGAAAGAATCTTCTATTCTGGTTCATTTGCATCAATATTCTGGCTC 13968949
Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869
|| || | | ||||| || || | |||||||| || | |||||| | || ||
Sbjct 13968948 AATAAGTGAGGACCAATGCCTGGTCTGACATTTTCCAATGACCTTATTAGCAGAGATGAG 13968889
Query 22870 GGTCTACACTGTGACTTTGCTTG 22892
||| | |||||||||||||| ||
Sbjct 13968888 GGTTTGCACTGTGACTTTGCCTG 13968866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356144597261500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |