Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq281 102 6e-17
seq59 87.8 1e-12
seq8 86.0 5e-12
>seq281
Length=3633602
Score = 102 bits (112), Expect = 6e-17
Identities = 133/184 (72%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990
|||||||| |||| ||||| | || |||| |||||| || ||||| ||||||| |||
Sbjct 126528 TTGTAATCAGACAGAGTACGGCCATCTTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGC 126587
Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050
|| || | || | |||||||| || |||| | ||||| | ||| |||||
Sbjct 126588 TGGTCAGGGGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCA 126647
Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110
| | ||| || || | || |||||||| || || |||||||||||||| || ||||||
Sbjct 126648 CTGGGCTCAACCTCAAGGGTAATAGTTTTACCCGTGAGAGTTTTCACAAAGATCTGCATT 126707
Query 43111 TTCT 43114
|||
Sbjct 126708 GTCT 126711
>seq59
Length=18190503
Score = 87.8 bits (96), Expect = 1e-12
Identities = 162/234 (69%), Gaps = 3/234 (1%)
Strand=Plus/Plus
Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940
|||| ||||| ||| | ||||| | ||| | |||| ||||||||| | ||||| || |
Sbjct 6109918 CGCCACCACGAAGTGTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 6109977
Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000
||| || ||| | || |||| ||| ||||| |||||||||| || ||| |||| | |
Sbjct 6109978 ACAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATGAGGAG 6110037
Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CG 43059
| | ||||| || || |||| | || || | | | || || |||| | ||
Sbjct 6110038 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATCGTATC-CCAGAATTCG 6110096
Query 43060 ACGTCTACCGTTATAGTTTTTC-CGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112
|| || | || || || || | | ||||||||||| || ||||| | ||| ||
Sbjct 6110097 ACCTCGAGAGTGATCGTCTTCCTCTGTTAGAGTTTTTACGAAAATCTTCATCTT 6110150
>seq8
Length=38990876
Score = 86.0 bits (94), Expect = 5e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940
|||| |||| ||||| ||||| | ||| | |||| ||||||||| | ||||| || |
Sbjct 3001674 CGCCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 3001615
Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATC 42995
||| || ||| | | |||| ||| ||||| ||||||||||||| ||| |||||
Sbjct 3001614 ACAGGGTGCGTCCAACTTCCAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGATC 3001560
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381274317189000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |