Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq281 102 6e-17 seq59 87.8 1e-12 seq8 86.0 5e-12 >seq281 Length=3633602 Score = 102 bits (112), Expect = 6e-17 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 |||||||| |||| ||||| | || |||| |||||| || ||||| ||||||| ||| Sbjct 126528 TTGTAATCAGACAGAGTACGGCCATCTTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGC 126587 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 || || | || | |||||||| || |||| | ||||| | ||| ||||| Sbjct 126588 TGGTCAGGGGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCA 126647 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | | ||| || || | || |||||||| || || |||||||||||||| || |||||| Sbjct 126648 CTGGGCTCAACCTCAAGGGTAATAGTTTTACCCGTGAGAGTTTTCACAAAGATCTGCATT 126707 Query 43111 TTCT 43114 ||| Sbjct 126708 GTCT 126711 >seq59 Length=18190503 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| ||||| ||| | ||||| | ||| | |||| ||||||||| | ||||| || | Sbjct 6109918 CGCCACCACGAAGTGTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 6109977 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCG 43000 ||| || ||| | || |||| ||| ||||| |||||||||| || ||| |||| | | Sbjct 6109978 ACAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATGAGGAG 6110037 Query 43001 GCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CG 43059 | | ||||| || || |||| | || || | | | || || |||| | || Sbjct 6110038 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATCGTATC-CCAGAATTCG 6110096 Query 43060 ACGTCTACCGTTATAGTTTTTC-CGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || || | || || || || | | ||||||||||| || ||||| | ||| || Sbjct 6110097 ACCTCGAGAGTGATCGTCTTCCTCTGTTAGAGTTTTTACGAAAATCTTCATCTT 6110150 >seq8 Length=38990876 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| |||| ||||| ||||| | ||| | |||| ||||||||| | ||||| || | Sbjct 3001674 CGCCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 3001615 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATC 42995 ||| || ||| | | |||| ||| ||||| ||||||||||||| ||| ||||| Sbjct 3001614 ACAGGGTGCGTCCAACTTCCAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGATC 3001560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381274317189000