Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq143 143 3e-29
seq183 109 6e-19
seq281 104 2e-17
seq37 98.7 1e-15
seq172 95.1 1e-14
seq12 93.3 4e-14
seq20 91.5 1e-13
seq13 91.5 1e-13
seq73 86.0 6e-12
>seq143
Length=9160510
Score = 143 bits (158), Expect = 3e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||| | ||||||| || || || | ||||||||||| || |||||||| || |
Sbjct 9115223 CCTCCCCTCAAACGCAGGACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 9115164
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||||| | |||||| || ||||| |||||| |||||| | ||||| || |||||
Sbjct 9115163 AGTGTGCGCTTGTCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGG 9115104
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|||||||||||||| ||| ||| ||| | | || | ||||| |||| ||||||
Sbjct 9115103 ATGCCTTCTTTGTCTTGAATCTTTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTACT 9115044
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| || | ||||| || ||||| ||||| ||||| || |||||
Sbjct 9115043 TCAAGGGTAATGGTCTTACCAGTCAAGGTTTTCACGAAGATCTGCAT 9114997
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| |||||||| || ||||||||||| || || || ||| || ||||| |||
Sbjct 9114969 GTGGATTCTTTCTGGATGTTGTAATCAGACAGGGTATGTCCGTTTTCCAGCTGTTTCCCA 9114910
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
||| ||| || | ||||| || ||||| |||||||||||||| ||| || ||
Sbjct 9114909 GCAAAGAACAATCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGAATCTTCACCTTG 9114850
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | ||| | ||||| |||| |||||||||| || | ||||| | |||||| ||
Sbjct 9114849 ACATTTTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTCTTACTGGTCAAGGTC 9114790
Query 143168 TTTACGAATATTTGCAT 143184
|| | ||| || || ||
Sbjct 9114789 TTCATGAAGATCTGTAT 9114773
>seq183
Length=6919543
Score = 109 bits (120), Expect = 6e-19
Identities = 154/218 (71%), Gaps = 9/218 (4%)
Strand=Plus/Plus
Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026
||||||| || || || | ||||||||||| || |||||||| || || ||||| |
Sbjct 1039985 AAACGCAGGACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGC 1040044
Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086
||||| || ||||| |||||| |||||| | ||||| || ||||| |||||||||
Sbjct 1040045 CCATCTTCCAGATGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGAATGCCTTCT 1040104
Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146
||||| ||| || | || || | || ||||||||||||||| ||
Sbjct 1040105 TTGTCTTGAATCTT---------CACTTTGACATTCTCAATGGGTTCTACTTCAAGGGTG 1040155
Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
| | ||| |||||||| || || || || || |||||
Sbjct 1040156 ATTGGCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 1040193
>seq281
Length=3633602
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||| | ||||| | || || || | |||||||||||||| |||||||| || |
Sbjct 114449 CCTCCCCTCAAACGGAGGACCAAGTGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAC 114508
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||| | | ||||| || ||||| |||||| |||||| | ||||| || || ||
Sbjct 114509 AGTGTACGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGG 114568
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| ||||| || || || | | || | ||||| |||| ||||||
Sbjct 114569 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCTACT 114628
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| || | ||||| || ||||| || || ||||| || |||||
Sbjct 114629 TCAAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 114675
>seq37
Length=23488536
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|||||||||||||| |||||||| || || ||| | | ||||| || ||||| |||
Sbjct 16715730 GTAGATTCTTTTTGGATGTTGTAGTCAGGCAGTGTACACCCATCTTCCAGCTGTTTCCCA 16715789
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
||| |||||| | ||||| || ||||| |||||||||||||| || || ||
Sbjct 16715790 GCAAAGATCAATCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGGATCTTCACCTTG 16715849
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | |||| |||| |||||||||| || | |||| | |||||| ||
Sbjct 16715850 ACATTCTCAATGGTGTTACTGGGCTCTACTTCAAGGGTGATGGTCTCACAGGTCAAGGTC 16715909
Query 143168 TTTACGAATATTTGCAT 143184
|| ||| | || |||||
Sbjct 16715910 TTCACGGAGATCTGCAT 16715926
>seq172
Length=7263250
Score = 95.1 bits (104), Expect = 1e-14
Identities = 151/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030
||| || | ||||| || || || ||||| || ||||| || || |||| || | |
Sbjct 740210 CAACACAAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGACAGGGTGCGTCCA-T 740152
Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090
|||| ||||| || |||||| | ||||| | |||||||| ||||| || ||||| || |
Sbjct 740151 CTTCTAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 740092
Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150
| || || |||| | || | || |||| |||||| || || | ||| | ||
Sbjct 740091 CATGGATCTTGGCCTTTACATTTTTTATTGTATCCGAGGGTTCGACCTCGAGAGTGATCG 740032
Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| ||||| | ||||||||||| || | |||
Sbjct 740031 TCTTCCCGGTTAGGGTTTTTACGAAAATCTTCAT 739998
>seq12
Length=37268909
Score = 93.3 bits (102), Expect = 4e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|||||||||||||| ||||| ||||| || |||| | ||||| |||||||| |||
Sbjct 28034339 GTAGATTCTTTTTGGATGTTATAATCAGACAGTGTGTGCCCATCTTCCAGTTGTTTCCCA 28034280
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091
||| |||||| | ||||| || ||||| ||||||||||||||
Sbjct 28034279 GCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTC 28034236
>seq20
Length=29555478
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030
||| || | ||||| || || || ||||| |||||||| || || |||| || | |
Sbjct 26628069 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGTCCA-T 26628011
Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090
|||| ||||| | |||||| | ||||| | |||||||| ||||| || ||||| || |
Sbjct 26628010 CTTCCAGTTGCTCGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 26627951
Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150
|| || |||| | ||| | || || | |||||| || || | ||| | ||
Sbjct 26627950 GCTGGATCTTGGCCTTTACATTTTCGATTGTATCTGAGGGTTCGACCTCGAGAGTGATCG 26627891
Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| || || | ||||||||||| || |||||
Sbjct 26627890 TCTTCCCCGTTAGGGTTTTTACGAAAATCTGCAT 26627857
>seq13
Length=36266773
Score = 91.5 bits (100), Expect = 1e-13
Identities = 102/133 (77%), Gaps = 4/133 (3%)
Strand=Plus/Plus
Query 142959 CTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCA 143018
|||||| ||||||| ||| ||||| | ||||||||||| || ||||||||||| ||
Sbjct 31100894 CTCCTC--AAACGCAGAACCAAATGCAGGGTAGATTCTTTCTGAATGTTGTAATCAGACA 31100951
Query 143019 TTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
||||| || | ||||| || ||||| |||| | |||||| | | ||| || || |||
Sbjct 31100952 GTGTGCATCCA-TCTTCCAGATGTTTCCCAGTAAAGATCAATCTCTTCTGGTCAGGGGGT 31101010
Query 143078 ATGCCTTCTTTGT 143090
||| ||| |||||
Sbjct 31101011 ATGTCTTTTTTGT 31101023
>seq73
Length=15502039
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|||||||||||| | |||||||| || || ||| | | |||| || ||||| |||
Sbjct 8774012 GTAGATTCTTTTGGGATGTTGTAGTCAGACAGTGTACGCCCATCTTACAGATGTTTCCCA 8774071
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
||| |||||| | |||| || || || |||||||| ||||| || || ||
Sbjct 8774072 GCAAAGATCAATCTCCGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTG 8774131
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | ||||| |||| |||||||||| || | ||||| | |||||| ||
Sbjct 8774132 ACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTCTTACTGGTCAAGGTC 8774191
Query 143168 TTTACGAATATTTGCAT 143184
|| || || || |||||
Sbjct 8774192 TTCACAAAGATCTGCAT 8774208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506884477560000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |