Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq143 143 3e-29 seq183 109 6e-19 seq281 104 2e-17 seq37 98.7 1e-15 seq172 95.1 1e-14 seq12 93.3 4e-14 seq20 91.5 1e-13 seq13 91.5 1e-13 seq73 86.0 6e-12 >seq143 Length=9160510 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | ||||||| || || || | ||||||||||| || |||||||| || | Sbjct 9115223 CCTCCCCTCAAACGCAGGACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 9115164 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| | |||||| || ||||| |||||| |||||| | ||||| || ||||| Sbjct 9115163 AGTGTGCGCTTGTCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGG 9115104 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| ||| ||| ||| | | || | ||||| |||| |||||| Sbjct 9115103 ATGCCTTCTTTGTCTTGAATCTTTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTACT 9115044 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| || ||||| ||||| ||||| || ||||| Sbjct 9115043 TCAAGGGTAATGGTCTTACCAGTCAAGGTTTTCACGAAGATCTGCAT 9114997 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || ||||||||||| || || || ||| || ||||| ||| Sbjct 9114969 GTGGATTCTTTCTGGATGTTGTAATCAGACAGGGTATGTCCGTTTTCCAGCTGTTTCCCA 9114910 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||| || | ||||| || ||||| |||||||||||||| ||| || || Sbjct 9114909 GCAAAGAACAATCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGAATCTTCACCTTG 9114850 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||| |||| |||||||||| || | ||||| | |||||| || Sbjct 9114849 ACATTTTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTCTTACTGGTCAAGGTC 9114790 Query 143168 TTTACGAATATTTGCAT 143184 || | ||| || || || Sbjct 9114789 TTCATGAAGATCTGTAT 9114773 >seq183 Length=6919543 Score = 109 bits (120), Expect = 6e-19 Identities = 154/218 (71%), Gaps = 9/218 (4%) Strand=Plus/Plus Query 142967 AAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTC 143026 ||||||| || || || | ||||||||||| || |||||||| || || ||||| | Sbjct 1039985 AAACGCAGGACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGTGTGCGC 1040044 Query 143027 GAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 143086 ||||| || ||||| |||||| |||||| | ||||| || ||||| ||||||||| Sbjct 1040045 CCATCTTCCAGATGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGAATGCCTTCT 1040104 Query 143087 TTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTC 143146 ||||| ||| || | || || | || ||||||||||||||| || Sbjct 1040105 TTGTCTTGAATCTT---------CACTTTGACATTCTCAATGGGTTCTACTTCAAGGGTG 1040155 Query 143147 ACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | | ||| |||||||| || || || || || ||||| Sbjct 1040156 ATTGGCTTACCGGTCAAGGTCTTCACAAAGATCTGCAT 1040193 >seq281 Length=3633602 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | ||||| | || || || | |||||||||||||| |||||||| || | Sbjct 114449 CCTCCCCTCAAACGGAGGACCAAGTGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAC 114508 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | | ||||| || ||||| |||||| |||||| | ||||| || || || Sbjct 114509 AGTGTACGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGG 114568 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | ||||| |||| |||||| Sbjct 114569 ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCAATGGTGTCACTGGGCTCTACT 114628 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| || ||||| || || ||||| || ||||| Sbjct 114629 TCAAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 114675 >seq37 Length=23488536 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||||||||| |||||||| || || ||| | | ||||| || ||||| ||| Sbjct 16715730 GTAGATTCTTTTTGGATGTTGTAGTCAGGCAGTGTACACCCATCTTCCAGCTGTTTCCCA 16715789 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | ||||| || ||||| |||||||||||||| || || || Sbjct 16715790 GCAAAGATCAATCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGGATCTTCACCTTG 16715849 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||| |||| |||||||||| || | |||| | |||||| || Sbjct 16715850 ACATTCTCAATGGTGTTACTGGGCTCTACTTCAAGGGTGATGGTCTCACAGGTCAAGGTC 16715909 Query 143168 TTTACGAATATTTGCAT 143184 || ||| | || ||||| Sbjct 16715910 TTCACGGAGATCTGCAT 16715926 >seq172 Length=7263250 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030 ||| || | ||||| || || || ||||| || ||||| || || |||| || | | Sbjct 740210 CAACACAAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGACAGGGTGCGTCCA-T 740152 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| ||||| || |||||| | ||||| | |||||||| ||||| || ||||| || | Sbjct 740151 CTTCTAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 740092 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | || || |||| | || | || |||| |||||| || || | ||| | || Sbjct 740091 CATGGATCTTGGCCTTTACATTTTTTATTGTATCCGAGGGTTCGACCTCGAGAGTGATCG 740032 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||||| | ||||||||||| || | ||| Sbjct 740031 TCTTCCCGGTTAGGGTTTTTACGAAAATCTTCAT 739998 >seq12 Length=37268909 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||||||||| ||||| ||||| || |||| | ||||| |||||||| ||| Sbjct 28034339 GTAGATTCTTTTTGGATGTTATAATCAGACAGTGTGTGCCCATCTTCCAGTTGTTTCCCA 28034280 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| |||||| | ||||| || ||||| |||||||||||||| Sbjct 28034279 GCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTC 28034236 >seq20 Length=29555478 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGT 143030 ||| || | ||||| || || || ||||| |||||||| || || |||| || | | Sbjct 26628069 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGTCCA-T 26628011 Query 143031 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 143090 |||| ||||| | |||||| | ||||| | |||||||| ||||| || ||||| || | Sbjct 26628010 CTTCCAGTTGCTCGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT 26627951 Query 143091 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 || || |||| | ||| | || || | |||||| || || | ||| | || Sbjct 26627950 GCTGGATCTTGGCCTTTACATTTTCGATTGTATCTGAGGGTTCGACCTCGAGAGTGATCG 26627891 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || || | ||||||||||| || ||||| Sbjct 26627890 TCTTCCCCGTTAGGGTTTTTACGAAAATCTGCAT 26627857 >seq13 Length=36266773 Score = 91.5 bits (100), Expect = 1e-13 Identities = 102/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 142959 CTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCA 143018 |||||| ||||||| ||| ||||| | ||||||||||| || ||||||||||| || Sbjct 31100894 CTCCTC--AAACGCAGAACCAAATGCAGGGTAGATTCTTTCTGAATGTTGTAATCAGACA 31100951 Query 143019 TTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 ||||| || | ||||| || ||||| |||| | |||||| | | ||| || || ||| Sbjct 31100952 GTGTGCATCCA-TCTTCCAGATGTTTCCCAGTAAAGATCAATCTCTTCTGGTCAGGGGGT 31101010 Query 143078 ATGCCTTCTTTGT 143090 ||| ||| ||||| Sbjct 31101011 ATGTCTTTTTTGT 31101023 >seq73 Length=15502039 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||||||| | |||||||| || || ||| | | |||| || ||||| ||| Sbjct 8774012 GTAGATTCTTTTGGGATGTTGTAGTCAGACAGTGTACGCCCATCTTACAGATGTTTCCCA 8774071 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | |||| || || || |||||||| ||||| || || || Sbjct 8774072 GCAAAGATCAATCTCCGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATCTTCGCCTTG 8774131 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| |||| |||||||||| || | ||||| | |||||| || Sbjct 8774132 ACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATGGTCTTACTGGTCAAGGTC 8774191 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 8774192 TTCACAAAGATCTGCAT 8774208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506884477560000