Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq281 109 4e-19
seq143 98.7 7e-16
seq71 91.5 1e-13
seq87 89.7 4e-13
seq172 87.8 1e-12
seq38 84.2 2e-11
seq59 82.4 6e-11
>seq281
Length=3633602
Score = 109 bits (120), Expect = 4e-19
Identities = 148/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
|| |||||||| ||||| || ||||||||||| ||| | | | ||||| | ||||
Sbjct 126504 TGCAGGGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTACGGCCATCTTCCAGTTGT 126563
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279
|| ||||| | ||||| | || ||||| || || ||||||||||| || |||
Sbjct 126564 TTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCTTGGATCTTT 126623
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
|| ||| ||| | || ||||| || || || || || | |||||| |||||||| ||
Sbjct 126624 GC-CTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATAGTTTTACCCGT 126682
Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363
|||||||| ||||| || |||||
Sbjct 126683 GAGAGTTTTCACAAAGATCTGCAT 126706
>seq143
Length=9160510
Score = 98.7 bits (108), Expect = 7e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| || ||||| | | || || || ||||| || ||||| || |||||||| ||
Sbjct 9115223 CCTCCCCTCAAACGCAGGACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 9115164
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | | |||||| | ||||| ||||| | ||||| | || ||||| ||
Sbjct 9115163 AGTGTGCGCTTGTCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGG 9115104
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
|| ||||||||||| ||| |||||| || ||| | || ||||| || || |||||
Sbjct 9115103 ATGCCTTCTTTGTCTTGAATCTTTGCT-TTGACATTCTCAATGGTGTCACTGGGCTCTAC 9115045
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| | ||||||||| ||||| |||| ||||| || || || |||||
Sbjct 9115044 TTCAAGGGTAATGGTCTTACCAGTCAAGGTTTTCACGAAGATCTGCAT 9114997
>seq71
Length=15614055
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/219 (70%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
|| || ||||| | | | | || || ||||| || |||||||| |||||||| ||
Sbjct 4796079 CCTCCCCTCAAACGCAGAGCCAAGTGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAC 4796020
Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256
|| | | | ||||| | | ||| ||||| | ||||| | || ||||| ||
Sbjct 4796019 AGTGTATGCCCATCTTCCAGCTTTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGG 4795960
Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
| ||||||||||| || ||||| ||| ||| | || ||||| || ||| | |||||
Sbjct 4795959 TTGCCTTCTTTGTCTTGGATCTTTGC-CTTGACATTCTCAATGGTGTCACTAGTCTCTAC 4795901
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAA 15354
|| | || ||| |||||||| || |||||||| |||||
Sbjct 4795900 CTCAAGGGCAATAGTTTTACCCGTGAGAGTTTTCACAAA 4795862
>seq87
Length=12919766
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194
||||||| | | ||| || || | |||||| ||||| || ||||| |||||||| ||
Sbjct 9400106 TGCCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 9400165
Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
|| | | | | ||| | ||| |||||||| | |||| | || || || |
Sbjct 9400166 ACAGGGTGCATCCATTTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAG 9400225
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
|||||||||| || || || ||| ||||||| |||| || ||||| ||| |
Sbjct 9400226 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATTGTATCCGAGCGTTCGA 9400285
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
| || | || || || || ||||| || | |||||||||||| ||||| ||
Sbjct 9400286 CCTCGAGAGTGATCGTCTTCCCTGTTAGGGCTTTTACAAAAATCTGCATCTT 9400337
>seq172
Length=7263250
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195
|||||| | | ||| || || | |||||| ||||| || ||||| || ||||| ||
Sbjct 740225 GCCACCGCGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGA 740166
Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255
|| | | | ||||||| ||| |||||||| | |||| | || || || ||
Sbjct 740165 CAGGGTGCGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 740106
Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
||||||||| || ||| || ||| ||||||| ||| ||| ||||| ||| ||
Sbjct 740105 AATTCCTTCCTTATCATGGATCTTGGCCTTTACATTTTTTATTGTATCCGAGGGTTCGAC 740046
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | || || || || || || || |||||||| ||||| | ||| ||
Sbjct 740045 CTCGAGAGTGATCGTCTTCCCGGTTAGGGTTTTTACGAAAATCTTCATCTT 739995
>seq38
Length=23493148
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195
|||||| | | ||| || || | |||||| ||||| || ||||| |||||||| ||
Sbjct 5890871 GCCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 5890930
Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255
|| | | | ||||| | ||| |||||||| | |||| | || || || ||
Sbjct 5890931 CAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 5890990
Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
||||||||| || || || ||| ||||||| |||| || ||||| || ||
Sbjct 5890991 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATCGTATCCGAGGGTTTGAC 5891050
Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | || || || || || ||||| ||||||| ||||| ||||| ||
Sbjct 5891051 CTCGAGAGTGATCGTCTTCCCCGTCAGGGTTTTTAAGAAAATCTGCATCTT 5891101
>seq59
Length=18190503
Score = 82.4 bits (90), Expect = 6e-11
Identities = 158/232 (68%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195
|||||| | | | | || || | |||||| ||||| || ||||| |||||||| ||
Sbjct 6109919 GCCACCACGAAGTGTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 6109978
Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255
|| | | | ||||| | ||| |||||||| | |||| | || || | ||
Sbjct 6109979 CAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATGAGGAGG 6110038
Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315
||||||||| || || || ||| ||||||| |||| || ||||| | ||| ||
Sbjct 6110039 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATCGTATCCCAGAATTCGAC 6110098
Query 15316 ATCTAAGGTAATGGTTTTAC-CTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| | || || || || | |||| ||||||||||| ||||| | ||| ||
Sbjct 6110099 CTCGAGAGTGATCGTCTTCCTCTGTTAGAGTTTTTACGAAAATCTTCATCTT 6110150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362088711790500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |