Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq281 109 4e-19 seq143 98.7 7e-16 seq71 91.5 1e-13 seq87 89.7 4e-13 seq172 87.8 1e-12 seq38 84.2 2e-11 seq59 82.4 6e-11 >seq281 Length=3633602 Score = 109 bits (120), Expect = 4e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| ||||| || ||||||||||| ||| | | | ||||| | |||| Sbjct 126504 TGCAGGGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTACGGCCATCTTCCAGTTGT 126563 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| | ||||| | || ||||| || || ||||||||||| || ||| Sbjct 126564 TTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCTTGGATCTTT 126623 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || ||||| || || || || || | |||||| |||||||| || Sbjct 126624 GC-CTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATAGTTTTACCCGT 126682 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| ||||| || ||||| Sbjct 126683 GAGAGTTTTCACAAAGATCTGCAT 126706 >seq143 Length=9160510 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| | | || || || ||||| || ||||| || |||||||| || Sbjct 9115223 CCTCCCCTCAAACGCAGGACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 9115164 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | |||||| | ||||| ||||| | ||||| | || ||||| || Sbjct 9115163 AGTGTGCGCTTGTCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGG 9115104 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| ||| |||||| || ||| | || ||||| || || ||||| Sbjct 9115103 ATGCCTTCTTTGTCTTGAATCTTTGCT-TTGACATTCTCAATGGTGTCACTGGGCTCTAC 9115045 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||||||||| ||||| |||| ||||| || || || ||||| Sbjct 9115044 TTCAAGGGTAATGGTCTTACCAGTCAAGGTTTTCACGAAGATCTGCAT 9114997 >seq71 Length=15614055 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| | | | | || || ||||| || |||||||| |||||||| || Sbjct 4796079 CCTCCCCTCAAACGCAGAGCCAAGTGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAC 4796020 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | | ||| ||||| | ||||| | || ||||| || Sbjct 4796019 AGTGTATGCCCATCTTCCAGCTTTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGG 4795960 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 | ||||||||||| || ||||| ||| ||| | || ||||| || ||| | ||||| Sbjct 4795959 TTGCCTTCTTTGTCTTGGATCTTTGC-CTTGACATTCTCAATGGTGTCACTAGTCTCTAC 4795901 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAA 15354 || | || ||| |||||||| || |||||||| ||||| Sbjct 4795900 CTCAAGGGCAATAGTTTTACCCGTGAGAGTTTTCACAAA 4795862 >seq87 Length=12919766 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 9400106 TGCCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 9400165 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || | | | | ||| | ||| |||||||| | |||| | || || || | Sbjct 9400166 ACAGGGTGCATCCATTTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAG 9400225 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||||||||| || || || ||| ||||||| |||| || ||||| ||| | Sbjct 9400226 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATTGTATCCGAGCGTTCGA 9400285 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | || | || || || || ||||| || | |||||||||||| ||||| || Sbjct 9400286 CCTCGAGAGTGATCGTCTTCCCTGTTAGGGCTTTTACAAAAATCTGCATCTT 9400337 >seq172 Length=7263250 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 |||||| | | ||| || || | |||||| ||||| || ||||| || ||||| || Sbjct 740225 GCCACCGCGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGA 740166 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | ||||||| ||| |||||||| | |||| | || || || || Sbjct 740165 CAGGGTGCGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 740106 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||| || ||| || ||| ||||||| ||| ||| ||||| ||| || Sbjct 740105 AATTCCTTCCTTATCATGGATCTTGGCCTTTACATTTTTTATTGTATCCGAGGGTTCGAC 740046 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || || || || || || || |||||||| ||||| | ||| || Sbjct 740045 CTCGAGAGTGATCGTCTTCCCGGTTAGGGTTTTTACGAAAATCTTCATCTT 739995 >seq38 Length=23493148 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 |||||| | | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 5890871 GCCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 5890930 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | ||||| | ||| |||||||| | |||| | || || || || Sbjct 5890931 CAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 5890990 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||| || || || ||| ||||||| |||| || ||||| || || Sbjct 5890991 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATCGTATCCGAGGGTTTGAC 5891050 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || || || || || ||||| ||||||| ||||| ||||| || Sbjct 5891051 CTCGAGAGTGATCGTCTTCCCCGTCAGGGTTTTTAAGAAAATCTGCATCTT 5891101 >seq59 Length=18190503 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 |||||| | | | | || || | |||||| ||||| || ||||| |||||||| || Sbjct 6109919 GCCACCACGAAGTGTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 6109978 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | ||||| | ||| |||||||| | |||| | || || | || Sbjct 6109979 CAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATGAGGAGG 6110038 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||| || || || ||| ||||||| |||| || ||||| | ||| || Sbjct 6110039 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATCGTATCCCAGAATTCGAC 6110098 Query 15316 ATCTAAGGTAATGGTTTTAC-CTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || | || || || || | |||| ||||||||||| ||||| | ||| || Sbjct 6110099 CTCGAGAGTGATCGTCTTCCTCTGTTAGAGTTTTTACGAAAATCTTCATCTT 6110150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362088711790500