Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq451 86.0 5e-12
seq143 86.0 5e-12
seq53 82.4 6e-11
>seq451
Length=1225386
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891
||||| ||||| || ||||| || | || ||||| || | | || | | |||||
Sbjct 1000164 CACCAGGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTC 1000223
Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951
|||||||||||||||| |||| || | |||||| || ||| | ||||| |||||
Sbjct 1000224 CAGCTGTTTACCCGCAAAAATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTG 1000283
Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011
||||| ||| || | | | || || | ||||||| || | |||||||| ||
Sbjct 1000284 GATTTTGGCTTTGACATTCTCTATGGTGTCACTAGGCTCCACCTCAAGAGTAATGGTCTT 1000343
Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||||| | || || ||||| || |||||
Sbjct 1000344 GCCTGTCAGGGTCTTCACAAAGATCTGCAT 1000373
>seq143
Length=9160510
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
||||| | ||| | | |||| ||||| ||||| || || || || ||||| || | |
Sbjct 9115223 CCTCCCCTCAAACGCAGGACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 9115164
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| ||| ||| ||||||||||| || ||| | || | ||||||||| || ||
Sbjct 9115163 AGTGTGCGCTTGTCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGG 9115104
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994
| ||| |||||||| ||| || ||| || | | | || || | ||||| |
Sbjct 9115103 ATGCCTTCTTTGTCTTGAATCTTTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTACT 9115044
Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | ||||||||| ||||| || || ||||| || || || |||||
Sbjct 9115043 TCAAGGGTAATGGTCTTACCAGTCAAGGTTTTCACGAAGATCTGCAT 9114997
>seq53
Length=19262973
Score = 82.4 bits (90), Expect = 6e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888
|| ||||| ||||| || |||||||| || || ||||| || | | || | | ||
Sbjct 11236663 TAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 11236722
Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948
||||||||||||||| ||| |||| || | |||||| || ||| | ||||| |||||
Sbjct 11236723 CTCCAGCTGTTTACCTGCAAAAATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTC 11236782
Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008
||||| ||| || | ||| || || | |||||| || | || |||||
Sbjct 11236783 TTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGT 11236842
Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| ||||| | | || ||||| || |||||
Sbjct 11236843 CTTGCCTGTCAGGGCCTTCACAAAGATCTGCAT 11236875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414469221577000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |