Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq451 86.0 5e-12 seq143 86.0 5e-12 seq53 82.4 6e-11 >seq451 Length=1225386 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || ||||| || | || ||||| || | | || | | ||||| Sbjct 1000164 CACCAGGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTC 1000223 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||||||||||||| |||| || | |||||| || ||| | ||||| ||||| Sbjct 1000224 CAGCTGTTTACCCGCAAAAATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTG 1000283 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||| ||| || | | | || || | ||||||| || | |||||||| || Sbjct 1000284 GATTTTGGCTTTGACATTCTCTATGGTGTCACTAGGCTCCACCTCAAGAGTAATGGTCTT 1000343 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| | || || ||||| || ||||| Sbjct 1000344 GCCTGTCAGGGTCTTCACAAAGATCTGCAT 1000373 >seq143 Length=9160510 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | ||| | | |||| ||||| ||||| || || || || ||||| || | | Sbjct 9115223 CCTCCCCTCAAACGCAGGACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 9115164 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| ||| ||||||||||| || ||| | || | ||||||||| || || Sbjct 9115163 AGTGTGCGCTTGTCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGG 9115104 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| |||||||| ||| || ||| || | | | || || | ||||| | Sbjct 9115103 ATGCCTTCTTTGTCTTGAATCTTTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTACT 9115044 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||||||| ||||| || || ||||| || || || ||||| Sbjct 9115043 TCAAGGGTAATGGTCTTACCAGTCAAGGTTTTCACGAAGATCTGCAT 9114997 >seq53 Length=19262973 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18829 TAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTC 18888 || ||||| ||||| || |||||||| || || ||||| || | | || | | || Sbjct 11236663 TAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 11236722 Query 18889 CTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 ||||||||||||||| ||| |||| || | |||||| || ||| | ||||| ||||| Sbjct 11236723 CTCCAGCTGTTTACCTGCAAAAATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTC 11236782 Query 18949 GGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGT 19008 ||||| ||| || | ||| || || | |||||| || | || ||||| Sbjct 11236783 TTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGT 11236842 Query 19009 TTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| | | || ||||| || ||||| Sbjct 11236843 CTTGCCTGTCAGGGCCTTCACAAAGATCTGCAT 11236875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414469221577000