Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq46 104 1e-17 seq281 96.9 2e-15 seq143 93.3 3e-14 seq21 89.7 3e-13 seq20 89.7 3e-13 seq16 89.7 3e-13 seq172 86.0 4e-12 seq25 84.2 1e-11 >seq46 Length=21197313 Score = 104 bits (114), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| ||||| || ||||| ||||||| ||| || || Sbjct 15668218 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGTTGCGTCCATC 15668277 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | | ||||| || || || || | ||| || || Sbjct 15668278 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGTAGGAATTCTTTCCTTATC 15668337 Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 | | |||||| |||| ||| |||||||| || || || || | ||| || Sbjct 15668338 CTGGATCTTCGCCT---TTACATTTTCGATCGTGTCCGAGGTTTCGACCTCGAAAGTGAT 15668394 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||||||||||| || |||| ||||||||| ||||| || Sbjct 15668395 TGTTTTTCCCGTTAGGGTTTGTACGAAAATCTGCATCTT 15668433 >seq281 Length=3633602 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | || | |||| |||| || || ||||| || || |||||||||||| Sbjct 126480 CCCCCTCTCAGACGAAGGACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 126539 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | | || |||| ||| || ||| ||| || || | |||||||| | ||| Sbjct 126540 AGAGTACGGCCATCTTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGG 126599 Query 33263 ATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || | | | ||| || || | | ||| ||||| |||| | | Sbjct 126600 ATGCCTTCTTTGTCTTGGATCTTTGCC---TTGACATTCTCAATGGTGTCACTGGGCTCA 126656 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || ||||| ||||| |||||||| || || || ||||| Sbjct 126657 ACCTCAAGGGTAATAGTTTTACCCGTGAGAGTTTTCACAAAGATCTGCAT 126706 >seq143 Length=9160510 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| || || || |||| ||||| |||| || || ||||| || || ||||| |||| Sbjct 9115225 CACCTCCCCTCAAACGCAGGACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAG 9115166 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 ||| || | | ||| |||| || || ||| ||| || || | |||||||| | | Sbjct 9115165 ACAGTGTGCGCTTGTCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAG 9115106 Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320 | ||||||||||| || |||| ||| || | | ||| ||||| |||| | | Sbjct 9115105 GGATGCCTTCTTTGTCTTGAATCTTTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTA 9115046 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || || || || || | ||||| ||||| || ||||| Sbjct 9115045 CTTCAAGGGTAATGGTCTTACCAGTCAAGGTTTTCACGAAGATCTGCAT 9114997 >seq21 Length=29174111 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/223 (70%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 33154 CCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG 33213 || |||||| | ||| | || ||||| || || || ||||| ||||||| || || Sbjct 10740775 CCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAGGGTGTGTCC 10740716 Query 33214 GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 || ||||||||||| ||| ||| || | | ||||| || || || ||| | || Sbjct 10740715 ATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGCTGATCAAGAGGAATTCCTCCCTT 10740656 Query 33274 TTCGCTA-ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAG 33329 || ||| ||| |||| ||||| ||| ||| | || | ||||| || || |||| Sbjct 10740655 ATC-CTAGATCTTGGCCT---TTACTTTTTTGATCATATCCTAGGGTTCGACCTCAAGAG 10740600 Query 33330 TTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 | ||| | || || || ||||||||||| ||||| ||||| || Sbjct 10740599 TGATCATCTTCCCTGTTAGAGTTTTTACAAAAATCTGCATCTT 10740557 >seq20 Length=29555478 Score = 89.7 bits (98), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| ||||| || ||||| ||||||| || || || Sbjct 26628069 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGTCCATC 26628010 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| ||||| ||| ||| || | | ||||| || | || || ||||| || | Sbjct 26628009 TTCCAGTTGCTCGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT- 26627951 Query 33277 GCTA-ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 ||| ||| |||| |||| ||| || || || ||||| || || ||||| | Sbjct 26627950 GCTGGATCTTGGCCT---TTACATTTTCGATTGTATCTGAGGGTTCGACCTCGAGAGTGA 26627894 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||| || ||||| || |||||||||||||| ||||| || Sbjct 26627893 TCGTCTTCCCCGTTAGGGTTTTTACGAAAATCTGCATCTT 26627854 >seq16 Length=33020160 Score = 89.7 bits (98), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| ||||| || ||||| ||||||| || || || Sbjct 11074204 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGTCCATC 11074145 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | | ||||| || | || || ||||| || || Sbjct 11074144 TTCCAGTTGCTTACCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 11074085 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| ||| || || || ||||| || || ||||| || Sbjct 11074084 CTGGATCTTGGCCT---TTACATTTTTGATTGTATCTGAGGGTTCGACCTCGAGAGTGAT 11074028 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||| || ||||| || ||||||||||||| ||||| || Sbjct 11074027 CGTCTTCCCCGTTAGGTTTTTTACGAAAATCTGCATCTT 11073989 >seq172 Length=7263250 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| ||||| |||||||| ||||||| || || || Sbjct 740210 CAACACAAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGACAGGGTGCGTCCATC 740151 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 || | |||||| ||| ||| || | | ||||| || | || || ||||| || || Sbjct 740150 TTCTAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 740091 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| ||| || || || ||||| || || ||||| || Sbjct 740090 ATGGATCTTGGCCT---TTACATTTTTTATTGTATCCGAGGGTTCGACCTCGAGAGTGAT 740034 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||| || || || || |||||||||||||| | ||| || Sbjct 740033 CGTCTTCCCGGTTAGGGTTTTTACGAAAATCTTCATCTT 739995 >seq25 Length=26272902 Score = 84.2 bits (92), Expect = 1e-11 Identities = 142/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||| ||||| || ||||||| |||||| || ||| || |||| |||| ||| Sbjct 16803894 GTGGACTCCTTTTGAATGTTGTAATTAGACAAGGTGCGTTCATCGTCCAGTTGCAAGCCA 16803953 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT-TTCGCTAA--TCGCCTGT 33289 ||| || | | ||||| || | || || ||||| || ||| || | |||| Sbjct 16803954 GCAAAAATCAGTCTCTGCTGATCAGGAGGGATTCCTTCCTTATTCTGGAACTTGGCCT-- 16804011 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 |||| ||| ||||| | ||||| ||| || | ||| || || || ||||| ||| Sbjct 16804012 -TTACATTTTCTATCGTATTCAAGGGTTCAACCTCGAAAGTGATGGTCTTCCCCGTTAGA 16804070 Query 33350 GTTTTTACGAAAATTTGCATGTT 33372 |||||||| ||||| ||||| || Sbjct 16804071 GTTTTTACTAAAATCTGCATCTT 16804093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318697955409000