Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq46 104 1e-17
seq281 96.9 2e-15
seq143 93.3 3e-14
seq21 89.7 3e-13
seq20 89.7 3e-13
seq16 89.7 3e-13
seq172 86.0 4e-12
seq25 84.2 1e-11
>seq46
Length=21197313
Score = 104 bits (114), Expect = 1e-17
Identities = 155/219 (71%), Gaps = 6/219 (3%)
Strand=Plus/Plus
Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216
|||||| | ||| | || ||||| ||||| || ||||| ||||||| ||| || ||
Sbjct 15668218 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGTTGCGTCCATC 15668277
Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276
|||| |||||| ||| ||| || | | ||||| || || || || | ||| || ||
Sbjct 15668278 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGTAGGAATTCTTTCCTTATC 15668337
Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333
| | |||||| |||| ||| |||||||| || || || || | ||| ||
Sbjct 15668338 CTGGATCTTCGCCT---TTACATTTTCGATCGTGTCCGAGGTTTCGACCTCGAAAGTGAT 15668394
Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372
||||||||||| || |||| ||||||||| ||||| ||
Sbjct 15668395 TGTTTTTCCCGTTAGGGTTTGTACGAAAATCTGCATCTT 15668433
>seq281
Length=3633602
Score = 96.9 bits (106), Expect = 2e-15
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| | || | |||| |||| || || ||||| || || ||||||||||||
Sbjct 126480 CCCCCTCTCAGACGAAGGACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 126539
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
| | | | || |||| ||| || ||| ||| || || | |||||||| | |||
Sbjct 126540 AGAGTACGGCCATCTTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGG 126599
Query 33263 ATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319
||||||||||| || | | | ||| || || | | ||| ||||| |||| | |
Sbjct 126600 ATGCCTTCTTTGTCTTGGATCTTTGCC---TTGACATTCTCAATGGTGTCACTGGGCTCA 126656
Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || || || || ||||| ||||| |||||||| || || || |||||
Sbjct 126657 ACCTCAAGGGTAATAGTTTTACCCGTGAGAGTTTTCACAAAGATCTGCAT 126706
>seq143
Length=9160510
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200
|||| || || || |||| ||||| |||| || || ||||| || || ||||| ||||
Sbjct 9115225 CACCTCCCCTCAAACGCAGGACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAG 9115166
Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260
||| || | | ||| |||| || || ||| ||| || || | |||||||| | |
Sbjct 9115165 ACAGTGTGCGCTTGTCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAG 9115106
Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320
| ||||||||||| || |||| ||| || | | ||| ||||| |||| | |
Sbjct 9115105 GGATGCCTTCTTTGTCTTGAATCTTTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTA 9115046
Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
| || || || || || || || || | ||||| ||||| || |||||
Sbjct 9115045 CTTCAAGGGTAATGGTCTTACCAGTCAAGGTTTTCACGAAGATCTGCAT 9114997
>seq21
Length=29174111
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/223 (70%), Gaps = 8/223 (4%)
Strand=Plus/Minus
Query 33154 CCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG 33213
|| |||||| | ||| | || ||||| || || || ||||| ||||||| || ||
Sbjct 10740775 CCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGACAGGGTGTGTCC 10740716
Query 33214 GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273
|| ||||||||||| ||| ||| || | | ||||| || || || ||| | ||
Sbjct 10740715 ATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGCTGATCAAGAGGAATTCCTCCCTT 10740656
Query 33274 TTCGCTA-ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAG 33329
|| ||| ||| |||| ||||| ||| ||| | || | ||||| || || ||||
Sbjct 10740655 ATC-CTAGATCTTGGCCT---TTACTTTTTTGATCATATCCTAGGGTTCGACCTCAAGAG 10740600
Query 33330 TTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372
| ||| | || || || ||||||||||| ||||| ||||| ||
Sbjct 10740599 TGATCATCTTCCCTGTTAGAGTTTTTACAAAAATCTGCATCTT 10740557
>seq20
Length=29555478
Score = 89.7 bits (98), Expect = 3e-13
Identities = 154/220 (70%), Gaps = 8/220 (4%)
Strand=Plus/Minus
Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216
|||||| | ||| | || ||||| ||||| || ||||| ||||||| || || ||
Sbjct 26628069 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGTCCATC 26628010
Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276
|||| ||||| ||| ||| || | | ||||| || | || || ||||| || |
Sbjct 26628009 TTCCAGTTGCTCGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTAT- 26627951
Query 33277 GCTA-ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332
||| ||| |||| |||| ||| || || || ||||| || || ||||| |
Sbjct 26627950 GCTGGATCTTGGCCT---TTACATTTTCGATTGTATCTGAGGGTTCGACCTCGAGAGTGA 26627894
Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372
|||| || ||||| || |||||||||||||| ||||| ||
Sbjct 26627893 TCGTCTTCCCCGTTAGGGTTTTTACGAAAATCTGCATCTT 26627854
>seq16
Length=33020160
Score = 89.7 bits (98), Expect = 3e-13
Identities = 152/219 (69%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216
|||||| | ||| | || ||||| ||||| || ||||| ||||||| || || ||
Sbjct 11074204 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGTCCATC 11074145
Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276
|||| |||||| ||| ||| || | | ||||| || | || || ||||| || ||
Sbjct 11074144 TTCCAGTTGCTTACCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 11074085
Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333
||| |||| |||| ||| || || || ||||| || || ||||| ||
Sbjct 11074084 CTGGATCTTGGCCT---TTACATTTTTGATTGTATCTGAGGGTTCGACCTCGAGAGTGAT 11074028
Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372
||| || ||||| || ||||||||||||| ||||| ||
Sbjct 11074027 CGTCTTCCCCGTTAGGTTTTTTACGAAAATCTGCATCTT 11073989
>seq172
Length=7263250
Score = 86.0 bits (94), Expect = 4e-12
Identities = 151/219 (69%), Gaps = 6/219 (3%)
Strand=Plus/Minus
Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216
|||||| | ||| | || ||||| ||||| |||||||| ||||||| || || ||
Sbjct 740210 CAACACAAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGACAGGGTGCGTCCATC 740151
Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276
|| | |||||| ||| ||| || | | ||||| || | || || ||||| || ||
Sbjct 740150 TTCTAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 740091
Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333
||| |||| |||| ||| || || || ||||| || || ||||| ||
Sbjct 740090 ATGGATCTTGGCCT---TTACATTTTTTATTGTATCCGAGGGTTCGACCTCGAGAGTGAT 740034
Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372
||| || || || || |||||||||||||| | ||| ||
Sbjct 740033 CGTCTTCCCGGTTAGGGTTTTTACGAAAATCTTCATCTT 739995
>seq25
Length=26272902
Score = 84.2 bits (92), Expect = 1e-11
Identities = 142/203 (70%), Gaps = 6/203 (3%)
Strand=Plus/Plus
Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232
|| ||||| ||||| || ||||||| |||||| || ||| || |||| |||| |||
Sbjct 16803894 GTGGACTCCTTTTGAATGTTGTAATTAGACAAGGTGCGTTCATCGTCCAGTTGCAAGCCA 16803953
Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT-TTCGCTAA--TCGCCTGT 33289
||| || | | ||||| || | || || ||||| || ||| || | ||||
Sbjct 16803954 GCAAAAATCAGTCTCTGCTGATCAGGAGGGATTCCTTCCTTATTCTGGAACTTGGCCT-- 16804011
Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349
|||| ||| ||||| | ||||| ||| || | ||| || || || ||||| |||
Sbjct 16804012 -TTACATTTTCTATCGTATTCAAGGGTTCAACCTCGAAAGTGATGGTCTTCCCCGTTAGA 16804070
Query 33350 GTTTTTACGAAAATTTGCATGTT 33372
|||||||| ||||| ||||| ||
Sbjct 16804071 GTTTTTACTAAAATCTGCATCTT 16804093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318697955409000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |