Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq54 86.0 3e-12
seq213 84.2 1e-11
seq25 82.4 4e-11
>seq54
Length=18522067
Score = 86.0 bits (94), Expect = 3e-12
Identities = 72/88 (82%), Gaps = 1/88 (1%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502
|||||| || | |||||| | |||||||||| ||||||| ||||||||||||| |
Sbjct 10000488 AAAAAAACACCTCTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCA 10000547
Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530
|||||| |||||||||||||| |||||
Sbjct 10000548 CGCTCTAACCAACTGAGCTAACCGGCCG 10000575
Score = 84.2 bits (92), Expect = 1e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 9966275 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 9966216
Query 11528 CCG 11530
|||
Sbjct 9966215 CCG 9966213
>seq213
Length=5512515
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct 2607711 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 2607652
Query 11515 CTGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 2607651 CTGAGCTAACCGGCC 2607637
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 2334495 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2334554
Query 11528 CC 11529
||
Sbjct 2334555 CC 2334556
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 2643360 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2643301
Query 11528 CC 11529
||
Sbjct 2643300 CC 2643299
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 2643877 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2643818
Query 11528 CC 11529
||
Sbjct 2643817 CC 2643816
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 2928447 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2928506
Query 11528 CC 11529
||
Sbjct 2928507 CC 2928508
>seq25
Length=26272902
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 10610995 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 10610936
Query 11528 CC 11529
||
Sbjct 10610935 CC 10610934
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261425868058000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |