Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq210 161 1e-34 seq81 109 8e-19 >seq210 Length=5656762 Score = 161 bits (178), Expect = 1e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| | || ||| |||||||||||||||| |||| || ||||| || ||| Sbjct 3400135 GTCTGGAACAAACGCTCATCATCCCATTCTGGATGTTCTTGTTTAAGCACATCACATACT 3400076 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| ||||||| ||||| || || || |||||||| |||||||||||||| ||||| Sbjct 3400075 CTGTTATGTTCCCGAAGCCAAATTGTTGCATACATCATCAGACCAGGCACCAGACCAAAG 3400016 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 ||||||| || ||||| | | | | || || || | || || |||||||| | Sbjct 3400015 ACCTCTTGCCCCACAGCAAACTGAAGGTGCTCAGGGACATGAGGGGGGTAGATCATCTCT 3399956 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 |||| ||||||||| | ||| |||||||| || || ||||| |||| Sbjct 3399955 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATGATCT 3399907 Score = 109 bits (120), Expect = 8e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| || |||||||| ||||| || || || || ||| ||| | || Sbjct 3398789 TCTTACCCCATGGCCTAGTCCTTTGGTGAAAGCTGGTCCACGTTTATGATCTGTCTTGAA 3398730 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| | ||| |||||||||||||| Sbjct 3398729 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGATC 3398670 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || | || | || | || ||| ||||||||||| Sbjct 3398669 AGGGATAAACTTTCTTCTCAGGAGAAATTTTTCCACAA 3398632 Score = 84.2 bits (92), Expect = 3e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| ||||| | |||||| || || || ||||| || ||||| || || | || Sbjct 3398209 ACCTTTTACCCCCACAGGAGTGGGGCAGTCATGAGGGACAGGAGGAAGGGCTCTGGTATA 3398150 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 ||||||||| || || | |||||||||||| ||| | |||| | || || | || Sbjct 3398149 ATAGGAGAGGTTAGAATAGGCTTCCCAGCTTTTGTAGCCATAGTGAACATTATAAGTTGG 3398090 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || |||||||||| ||||| ||||| Sbjct 3398089 TGGACTCTCAATCAAATGTGATCTTGCTGAA 3398059 >seq81 Length=13573838 Score = 109 bits (120), Expect = 8e-19 Identities = 171/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 || ||| ||||||| || || || | || || || || ||||| ||||||||||| Sbjct 526695 GTGGCAGTCTTGACAATGTTGAAACCTGCCTCGCCACCAAATGTGCTTGGTTTCCAGTAC 526754 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 |||| || |||||| ||| | | |||||| ||||||||||| |||||||| | || Sbjct 526755 TCCGGAGAACAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCT 526814 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | || ||||| || || |||| ||| ||| || ||| || | | | || | || Sbjct 526815 ATCATACTCTCCCCAAAAATGGAGTTTGGAAGGCACTTCTCAAGAAGCAGCCCTGGATAG 526874 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971 ||||||| || || ||||| || || || | | ||| || || || ||||| ||| Sbjct 526875 AACTCCATGGCATCAATGTCACCATACAGCTCTTCCAATTCAGCCGCCATCTCCTTCTCT 526934 Query 8972 CCTGT 8976 ||||| Sbjct 526935 CCTGT 526939 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 || |||||||| ||||| | || |||||| | || || || |||| | ||| | | Sbjct 542124 CTCACCCCATGGCCCAGGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 542181 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 | || ||||| || |||||||| |||||||||||||||| | ||| ||||| || |||| Sbjct 542182 AGAATTGGTGAGTAAAATGTTGTGCAAAAAAGGCAAACATGAGGTTAGTGCCTTGAGGAT 542241 Query 10147 CGGGAGTGAAGGTCCTCC 10164 | || |||| |||||| Sbjct 542242 CAGGTATGAACTTCCTCC 542259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708343240520000