Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq210 161 1e-34
seq81 109 8e-19
>seq210
Length=5656762
Score = 161 bits (178), Expect = 1e-34
Identities = 173/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| |||| | || ||| |||||||||||||||| |||| || ||||| || |||
Sbjct 3400135 GTCTGGAACAAACGCTCATCATCCCATTCTGGATGTTCTTGTTTAAGCACATCACATACT 3400076
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||| ||||||| ||||| || || || |||||||| |||||||||||||| |||||
Sbjct 3400075 CTGTTATGTTCCCGAAGCCAAATTGTTGCATACATCATCAGACCAGGCACCAGACCAAAG 3400016
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
||||||| || ||||| | | | | || || || | || || |||||||| |
Sbjct 3400015 ACCTCTTGCCCCACAGCAAACTGAAGGTGCTCAGGGACATGAGGGGGGTAGATCATCTCT 3399956
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
|||| ||||||||| | ||| |||||||| || || ||||| ||||
Sbjct 3399955 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATGATCT 3399907
Score = 109 bits (120), Expect = 8e-19
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| || |||||||| ||||| || || || || ||| ||| | ||
Sbjct 3398789 TCTTACCCCATGGCCTAGTCCTTTGGTGAAAGCTGGTCCACGTTTATGATCTGTCTTGAA 3398730
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
|||||| || ||||| || ||| |||| || |||||||| | ||| ||||||||||||||
Sbjct 3398729 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGATC 3398670
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185
|| | || | || | || ||| |||||||||||
Sbjct 3398669 AGGGATAAACTTTCTTCTCAGGAGAAATTTTTCCACAA 3398632
Score = 84.2 bits (92), Expect = 3e-11
Identities = 109/151 (72%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348
|||||| ||||| | |||||| || || || ||||| || ||||| || || | ||
Sbjct 3398209 ACCTTTTACCCCCACAGGAGTGGGGCAGTCATGAGGGACAGGAGGAAGGGCTCTGGTATA 3398150
Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408
||||||||| || || | |||||||||||| ||| | |||| | || || | ||
Sbjct 3398149 ATAGGAGAGGTTAGAATAGGCTTCCCAGCTTTTGTAGCCATAGTGAACATTATAAGTTGG 3398090
Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| || |||||||||| ||||| |||||
Sbjct 3398089 TGGACTCTCAATCAAATGTGATCTTGCTGAA 3398059
>seq81
Length=13573838
Score = 109 bits (120), Expect = 8e-19
Identities = 171/245 (70%), Gaps = 0/245 (0%)
Strand=Plus/Plus
Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791
|| ||| ||||||| || || || | || || || || ||||| |||||||||||
Sbjct 526695 GTGGCAGTCTTGACAATGTTGAAACCTGCCTCGCCACCAAATGTGCTTGGTTTCCAGTAC 526754
Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851
|||| || |||||| ||| | | |||||| ||||||||||| |||||||| | ||
Sbjct 526755 TCCGGAGAACAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCT 526814
Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911
| || ||||| || || |||| ||| ||| || ||| || | | | || | ||
Sbjct 526815 ATCATACTCTCCCCAAAAATGGAGTTTGGAAGGCACTTCTCAAGAAGCAGCCCTGGATAG 526874
Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971
||||||| || || ||||| || || || | | ||| || || || ||||| |||
Sbjct 526875 AACTCCATGGCATCAATGTCACCATACAGCTCTTCCAATTCAGCCGCCATCTCCTTCTCT 526934
Query 8972 CCTGT 8976
|||||
Sbjct 526935 CCTGT 526939
Score = 86.0 bits (94), Expect = 9e-12
Identities = 103/138 (75%), Gaps = 4/138 (3%)
Strand=Plus/Plus
Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086
|| |||||||| ||||| | || |||||| | || || || |||| | ||| | |
Sbjct 542124 CTCACCCCATGGCCCAGGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 542181
Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146
| || ||||| || |||||||| |||||||||||||||| | ||| ||||| || ||||
Sbjct 542182 AGAATTGGTGAGTAAAATGTTGTGCAAAAAAGGCAAACATGAGGTTAGTGCCTTGAGGAT 542241
Query 10147 CGGGAGTGAAGGTCCTCC 10164
| || |||| ||||||
Sbjct 542242 CAGGTATGAACTTCCTCC 542259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708343240520000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |