Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq213 179 6e-41
seq352 114 2e-21
>seq213
Length=5512515
Score = 179 bits (198), Expect = 6e-41
Identities = 200/267 (75%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
||||||||||| || | ||| ||||| ||||||||||| || |||||||| || |||
Sbjct 3498929 GCTAAGCGTCACCGTAAGGTTCTGCGAGACAACATCCAAGGTATTACCAAGCCTGCCATC 3498988
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||||| |||||| | || || || |||||| | ||||| | |||||||||||| |
Sbjct 3498989 CGACGTCTAGCTCGTAGAGGGGGTGTTAAGCGTATTTCTGGTCTCATCTATGAAGAGACT 3499048
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || | ||| |||| || ||| || |||| || || || ||| ||||||
Sbjct 3499049 CGCGGGGTGCTCAAGGTCTTTCTGGAGAATGTGATCCGCGACGCCGTCACCTACACCGAG 3499108
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || || ||||||||||| |||||||| | || || || | ||||| || ||
Sbjct 3499109 CACGCCAAGCGCAAGACTGTCACGGCCATGGATGTGGTATACGCGCTCAAACGCCAGGGA 3499168
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| | |||||||||||| |||||
Sbjct 3499169 CGTACTCTGTATGGTTTTGGAGGTTAA 3499195
Score = 163 bits (180), Expect = 4e-36
Identities = 182/243 (75%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||||||| || | | || || || |||||||| || ||||||||||| || ||
Sbjct 2229645 CGCTAAGCGTCACCGTAAAGTGCTCCGCGACAACATCCAGGGTATCACCAAGCCGGCCAT 2229586
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||||| ||||| || || ||||| ||||||| | ||||||| ||||
Sbjct 2229585 CCGGCGCTTGGCTCGCCGTGGAGGCGTGAAGCGCATCTCTGGCCTCATCTATGAGGAGAC 2229526
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || ||||| ||||| | ||| || |||| || || || ||| |||||
Sbjct 2229525 TCGCGGCGTCCTGAAGGTCTTCTTGGAGAATGTGATCCGGGACGCCGTCACCTACACCGA 2229466
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| |||||| |||||||| | ||||| || ||||||| || ||
Sbjct 2229465 GCACGCCAAGCGGAAGACAGTCACCGCCATGGATGTGGTCTACGCGCTGAAACGGCAGGG 2229406
Query 16672 CCG 16674
||
Sbjct 2229405 GCG 2229403
Score = 161 bits (178), Expect = 2e-35
Identities = 179/239 (75%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|||||||||||||| || || || || || || || || | ||||| ||||| ||||||
Sbjct 3317807 CTTCGAGATAACATTCAGGGCATTACTAAACCCGCCATTAGACGTCTTGCTCGCCGTGGT 3317866
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || ||||| | ||||| || |||| || |||| |||| ||| | ||| | |||
Sbjct 3317867 GGTGTTAAGCGCATTTCTGGCCTGATCTACGAGGAGACACGTGGGGTTCTCAAGGTTTTC 3317926
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| |||| |||||| || ||| ||||||||||| || || ||||||||
Sbjct 3317927 CTGGAGAACGTGATCCGTGATGCAGTCACCTACACCGAGCACGCCAAGCGCAAGACTGTT 3317986
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
||| |||||||| | ||||| || | ||||| || ||||||| | || || |||||
Sbjct 3317987 ACCGCCATGGATGTTGTCTACGCGCTCAAACGCCAGGGCCGTACCCTCTACGGCTTTGG 3318045
Score = 158 bits (174), Expect = 2e-34
Identities = 195/267 (73%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| ||||| | || ||||| || ||||| || || |||||||| |||||
Sbjct 2175723 CGCTAAGCGCCATCGTAAGGTGCTACGAGACAATATCCAGGGCATTACCAAGCCTGCTAT 2175782
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || |||| | |||||||| ||||||||| | ||||| | ||||||||||||
Sbjct 2175783 TCGCCGCTTGGCGAGGCGTGGTGGTGTCAAGCGTATTTCTGGCCTTATCTATGAAGAGAC 2175842
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | ||| | ||| | || || ||| ||| |||| |||||| | ||| || ||
Sbjct 2175843 CCGCGGGGTTCTCAAGGTGTTTCTGGAGAACGTGATCCGTGATGCCGTAACCTACACTGA 2175902
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||| || || ||||| ||||| |||||||| | |||||||| ||||||| |||||
Sbjct 2175903 ACACGCCAAGCGCAAGACAGTCACTGCCATGGATGTGGTCTATGCGCTGAAACGCCAAGG 2175962
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698
|| | | || || ||||| ||||
Sbjct 2175963 GCGCACCCTCTACGGCTTTGGGGGTTA 2175989
Score = 156 bits (172), Expect = 7e-34
Identities = 191/261 (73%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||||||| || | | ||||| ||||||||||| || |||||||| || |||||
Sbjct 2218205 CGCTAAGCGTCACCGTAAAGTGCTTCGCGATAACATCCAGGGTATCACCAAACCCGCTAT 2218264
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
| || |||||||| ||||| ||||| ||||| |||| || | ||||||| ||||
Sbjct 2218265 TAGGCGCCTGGCTCGCCGTGGAGGAGTGAAGCGCATCTCGGGCCTCATCTATGAGGAGAC 2218324
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || ||||| ||||||| ||| ||| || | || || || ||| |||||
Sbjct 2218325 TCGCGGCGTGCTGAAGGTCTTCCTAGAGAACGTGATTCGGGACGCCGTCACCTACACCGA 2218384
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| || || | ||||| | || ||||| ||||||| || ||
Sbjct 2218385 GCACGCCAAGCGAAAGACAGTTACTGCAATGGACGTGGTTTATGCGCTGAAACGCCAGGG 2218444
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
|| | | ||||| || ||
Sbjct 2218445 GCGCACCCTCTATGGATTCGG 2218465
Score = 156 bits (172), Expect = 7e-34
Identities = 191/261 (73%), Gaps = 0/261 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| ||||||| | ||||| |||||||||||||| ||||| ||||| || ||
Sbjct 3254524 CGCCAAGCGCCATCGCAAAGTCCTTCGCGATAACATCCAAGGCATCACTAAGCCTGCGAT 3254465
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||| |||||||| ||||| ||||| ||||| | ||||| | | || || || |
Sbjct 3254464 TCGTCGCCTGGCTCGGCGTGGAGGAGTTAAGCGCATATCTGGTCTCATTTACGAGGAAAC 3254405
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
| | | || | ||| | || || ||| ||| || | || || | ||||||||
Sbjct 3254404 TAGGGGAGTACTTAAGGTGTTTCTGGAGAACGTGATTCGCGACGCCGTGACTTATACCGA 3254345
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || |||||||| ||| |||||||| | ||||| || | ||||| || ||
Sbjct 3254344 GCACGCCAAGCGCAAGACTGTTACCGCCATGGATGTAGTCTACGCGCTTAAACGCCAGGG 3254285
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | |||| ||||||||
Sbjct 3254284 CCGCACTCTTTACGGTTTTGG 3254264
Score = 156 bits (172), Expect = 7e-34
Identities = 188/256 (73%), Gaps = 0/256 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || || ||||| || || || || || || ||||| || ||
Sbjct 3509053 CTCCGCGACAACATCCAGGGCATTACCAAACCTGCCATACGGCGCCTAGCTCGGCGCGGC 3508994
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || |||||| ||||||| || ||||||| |||| ||||| ||| ||||| |||||
Sbjct 3508993 GGCGTGAAGCGTATCTCTGGTCTGATCTATGAGGAGACTCGTGGAGTTCTGAAGGTCTTC 3508934
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| |||| || || | ||| ||||||||||| || || ||||| |||
Sbjct 3508933 CTGGAGAACGTAATCCGCGACGCCGTTACCTACACCGAGCACGCCAAGCGCAAGACGGTC 3508874
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693
||| ||||||| | |||||||| | || || || || || | | ||||| || ||
Sbjct 3508873 ACCGCCATGGACGTGGTCTATGCGCTCAAGCGCCAGGGACGCACCCTCTATGGCTTCGGG 3508814
Query 16694 AGTTAATCTTCTAATC 16709
||||| |||| |||
Sbjct 3508813 GGTTAAAGTTCTCATC 3508798
Score = 147 bits (162), Expect = 3e-31
Identities = 180/246 (73%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
||| || || || ||||| || ||||| || || || ||||| ||| ||||||| |||||
Sbjct 3251593 TCTGCGTGACAATATCCAGGGTATCACTAAACCTGCCATCCGGCGTTTGGCTCGGCGTGG 3251652
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
||| ||||||||| | || || | |||| || |||| ||| | || | ||| | ||
Sbjct 3251653 TGGGGTCAAGCGTATTTCAGGTCTCATCTACGAGGAGACTCGCGGGGTGCTCAAGGTATT 3251712
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
|| ||| || |||| || ||| || ||| || |||||||| || || ||||||||
Sbjct 3251713 TCTGGAGAATGTGATCCGCGACGCTGTCACCTACACTGAGCACGCCAAGCGCAAGACTGT 3251772
Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
||| | ||||| | ||||||||| | ||||| || || || | | ||||||| |||||
Sbjct 3251773 CACTGCTATGGACGTGGTCTATGCACTTAAACGCCAGGGTCGCACGCTTTATGGCTTTGG 3251832
Query 16693 AAGTTA 16698
||||
Sbjct 3251833 TGGTTA 3251838
Score = 145 bits (160), Expect = 1e-30
Identities = 178/243 (73%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| || |||| | ||||| ||||||||||| ||||| |||||||| |||||
Sbjct 3223970 CGCTAAGCGCCACCGCAAAGTGCTTCGTGATAACATCCAGGGAATTACCAAGCCTGCTAT 3224029
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || |||||||||||||||| || |||||| |||| || | |||| || ||||
Sbjct 3224030 TCGGCGCTTGGCTCGTCGTGGTGGCGTTAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 3224089
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | || | || || ||| || |||| || || | ||| |||||
Sbjct 3224090 CCGCGGGGTCCTCAAAGTGTTTCTGGAGAATGTGATCCGCGACGCCGTAACCTACACCGA 3224149
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || ||||||||||| || | |||||| | || || || ||||||| || ||
Sbjct 3224150 GCACGCCAAGCGTAAGACTGTGACTGCTATGGATGTGGTTTACGCGCTGAAACGCCAGGG 3224209
Query 16672 CCG 16674
||
Sbjct 3224210 GCG 3224212
Score = 127 bits (140), Expect = 3e-25
Identities = 176/244 (72%), Gaps = 2/244 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||||||||| || || | | || || || || || ||||| || |||||||| || ||||
Sbjct 3292456 CGCTAAGCGCCACCGGAAGGTC-CTGCGTGACAATATCCAGGGCATCACCAAACCTGCTA 3292398
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || |||| || || ||||| || || ||| |||| || | | ||||| ||||
Sbjct 3292397 TCCGGCGCTTGGCCCGACGAGGTGGCGTAAAACGTATCTCGGGTCTCATTTATGAGGAGA 3292338
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
||| | || | ||| |||| || ||| ||| |||| || || | || || |
Sbjct 3292337 CTCGCGGGGTCCTCAAGGTCTTTCTGGAGAACGTGATCCGGGACGCCGTTACTTACACGG 3292278
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||||||||| |||||||| | ||||| || | ||||| || |
Sbjct 3292277 AGCACGCCAAGCGCAAGACTGTCACTGCCATGGATGTGGTCTACGCGCTCAAACGCCAGG 3292218
Query 16671 GCCG 16674
||||
Sbjct 3292217 GCCG 3292214
Score = 125 bits (138), Expect = 1e-24
Identities = 190/268 (71%), Gaps = 2/268 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||| || || | | | || || || |||||||| || || || || || || ||
Sbjct 3413139 GCTAAGCGCCACCGTA-AGGTATTGCGTGACAACATCCAGGGCATTACTAAACCTGCAAT 3413081
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| ||||| ||||| |||||||| || |||||| | ||||| | | ||||| ||||
Sbjct 3413080 TCGGCGTCTCGCTCGCCGTGGTGGCGTGAAGCGTATTTCTGGCCTCATTTATGAGGAGAC 3413021
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || ||||| | || | ||| || || | ||||| | ||| || ||
Sbjct 3413020 TCGCGGAGTGCTGAAGGTTTTTTTGGAGAATGTGATTCGCGATGCCGTGACCTACACTGA 3412961
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||| || ||||||||||| || |||||||| | ||||| || | ||||| |||||
Sbjct 3412960 ACACGCAAAGCGTAAGACTGTTACTGCCATGGATGTAGTCTACGCGCTCAAACGCCAAGG 3412901
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||| | | ||||| || || |||||
Sbjct 3412900 CCGCACACTCTATGGCTTCGGCGGTTAA 3412873
>seq352
Length=2542345
Score = 114 bits (126), Expect = 2e-21
Identities = 182/261 (70%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| ||| | | | | | ||||||||||||| || || || ||||| |||||
Sbjct 2009839 CGCTAAGCGACATAGGAAAGTTTTAAGAGATAACATCCAGGGGATTACGAAGCCTGCTAT 2009898
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||| |||| || || || || || || || ||||||| | | ||||| ||||
Sbjct 2009899 TCGTCGTTTGGCGCGCCGCGGCGGCGTTAAACGCATCTCTGGTCTCATTTATGAGGAGAC 2009958
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | |||| |||| | ||| | ||| || || | || || | || || ||
Sbjct 2009959 GCGCGGTGTTCTGAAAGTGTTCTTGGAGAATGTAATTCGGGACGCCGTTACTTACACAGA 2010018
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||| || || || ||||| || || |||||||| | ||||| || |||| ||||| ||
Sbjct 2010019 GCATGCCAAGCGCAAGACGGTTACTGCCATGGATGTAGTCTACGCCCTGAAGCGTCAGGG 2010078
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | || || |||||
Sbjct 2010079 CCGCACACTCTACGGCTTTGG 2010099
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79056456706500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |