Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq213 179 6e-41 seq352 114 2e-21 >seq213 Length=5512515 Score = 179 bits (198), Expect = 6e-41 Identities = 200/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| || | ||| ||||| ||||||||||| || |||||||| || ||| Sbjct 3498929 GCTAAGCGTCACCGTAAGGTTCTGCGAGACAACATCCAAGGTATTACCAAGCCTGCCATC 3498988 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| |||||| | || || || |||||| | ||||| | |||||||||||| | Sbjct 3498989 CGACGTCTAGCTCGTAGAGGGGGTGTTAAGCGTATTTCTGGTCTCATCTATGAAGAGACT 3499048 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| |||| || ||| || |||| || || || ||| |||||| Sbjct 3499049 CGCGGGGTGCTCAAGGTCTTTCTGGAGAATGTGATCCGCGACGCCGTCACCTACACCGAG 3499108 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||||||||| |||||||| | || || || | ||||| || || Sbjct 3499109 CACGCCAAGCGCAAGACTGTCACGGCCATGGATGTGGTATACGCGCTCAAACGCCAGGGA 3499168 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | |||||||||||| ||||| Sbjct 3499169 CGTACTCTGTATGGTTTTGGAGGTTAA 3499195 Score = 163 bits (180), Expect = 4e-36 Identities = 182/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | || || || |||||||| || ||||||||||| || || Sbjct 2229645 CGCTAAGCGTCACCGTAAAGTGCTCCGCGACAACATCCAGGGTATCACCAAGCCGGCCAT 2229586 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||| ||||| || || ||||| ||||||| | ||||||| |||| Sbjct 2229585 CCGGCGCTTGGCTCGCCGTGGAGGCGTGAAGCGCATCTCTGGCCTCATCTATGAGGAGAC 2229526 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| ||||| | ||| || |||| || || || ||| ||||| Sbjct 2229525 TCGCGGCGTCCTGAAGGTCTTCTTGGAGAATGTGATCCGGGACGCCGTCACCTACACCGA 2229466 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| |||||||| | ||||| || ||||||| || || Sbjct 2229465 GCACGCCAAGCGGAAGACAGTCACCGCCATGGATGTGGTCTACGCGCTGAAACGGCAGGG 2229406 Query 16672 CCG 16674 || Sbjct 2229405 GCG 2229403 Score = 161 bits (178), Expect = 2e-35 Identities = 179/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 |||||||||||||| || || || || || || || || | ||||| ||||| |||||| Sbjct 3317807 CTTCGAGATAACATTCAGGGCATTACTAAACCCGCCATTAGACGTCTTGCTCGCCGTGGT 3317866 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| | ||||| || |||| || |||| |||| ||| | ||| | ||| Sbjct 3317867 GGTGTTAAGCGCATTTCTGGCCTGATCTACGAGGAGACACGTGGGGTTCTCAAGGTTTTC 3317926 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| |||||| || ||| ||||||||||| || || |||||||| Sbjct 3317927 CTGGAGAACGTGATCCGTGATGCAGTCACCTACACCGAGCACGCCAAGCGCAAGACTGTT 3317986 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||| | ||||| || | ||||| || ||||||| | || || ||||| Sbjct 3317987 ACCGCCATGGATGTTGTCTACGCGCTCAAACGCCAGGGCCGTACCCTCTACGGCTTTGG 3318045 Score = 158 bits (174), Expect = 2e-34 Identities = 195/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||| | || ||||| || ||||| || || |||||||| ||||| Sbjct 2175723 CGCTAAGCGCCATCGTAAGGTGCTACGAGACAATATCCAGGGCATTACCAAGCCTGCTAT 2175782 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| | |||||||| ||||||||| | ||||| | |||||||||||| Sbjct 2175783 TCGCCGCTTGGCGAGGCGTGGTGGTGTCAAGCGTATTTCTGGCCTTATCTATGAAGAGAC 2175842 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | || || ||| ||| |||| |||||| | ||| || || Sbjct 2175843 CCGCGGGGTTCTCAAGGTGTTTCTGGAGAACGTGATCCGTGATGCCGTAACCTACACTGA 2175902 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || ||||| ||||| |||||||| | |||||||| ||||||| ||||| Sbjct 2175903 ACACGCCAAGCGCAAGACAGTCACTGCCATGGATGTGGTCTATGCGCTGAAACGCCAAGG 2175962 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 || | | || || ||||| |||| Sbjct 2175963 GCGCACCCTCTACGGCTTTGGGGGTTA 2175989 Score = 156 bits (172), Expect = 7e-34 Identities = 191/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | ||||| ||||||||||| || |||||||| || ||||| Sbjct 2218205 CGCTAAGCGTCACCGTAAAGTGCTTCGCGATAACATCCAGGGTATCACCAAACCCGCTAT 2218264 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | || |||||||| ||||| ||||| ||||| |||| || | ||||||| |||| Sbjct 2218265 TAGGCGCCTGGCTCGCCGTGGAGGAGTGAAGCGCATCTCGGGCCTCATCTATGAGGAGAC 2218324 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| ||||||| ||| ||| || | || || || ||| ||||| Sbjct 2218325 TCGCGGCGTGCTGAAGGTCTTCCTAGAGAACGTGATTCGGGACGCCGTCACCTACACCGA 2218384 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| || || | ||||| | || ||||| ||||||| || || Sbjct 2218385 GCACGCCAAGCGAAAGACAGTTACTGCAATGGACGTGGTTTATGCGCTGAAACGCCAGGG 2218444 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 2218445 GCGCACCCTCTATGGATTCGG 2218465 Score = 156 bits (172), Expect = 7e-34 Identities = 191/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| | ||||| |||||||||||||| ||||| ||||| || || Sbjct 3254524 CGCCAAGCGCCATCGCAAAGTCCTTCGCGATAACATCCAAGGCATCACTAAGCCTGCGAT 3254465 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||||||| ||||| ||||| ||||| | ||||| | | || || || | Sbjct 3254464 TCGTCGCCTGGCTCGGCGTGGAGGAGTTAAGCGCATATCTGGTCTCATTTACGAGGAAAC 3254405 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | | || | ||| | || || ||| ||| || | || || | |||||||| Sbjct 3254404 TAGGGGAGTACTTAAGGTGTTTCTGGAGAACGTGATTCGCGACGCCGTGACTTATACCGA 3254345 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||| ||| |||||||| | ||||| || | ||||| || || Sbjct 3254344 GCACGCCAAGCGCAAGACTGTTACCGCCATGGATGTAGTCTACGCGCTTAAACGCCAGGG 3254285 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | |||| |||||||| Sbjct 3254284 CCGCACTCTTTACGGTTTTGG 3254264 Score = 156 bits (172), Expect = 7e-34 Identities = 188/256 (73%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || || ||||| || || || || || || ||||| || || Sbjct 3509053 CTCCGCGACAACATCCAGGGCATTACCAAACCTGCCATACGGCGCCTAGCTCGGCGCGGC 3508994 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| ||||||| || ||||||| |||| ||||| ||| ||||| ||||| Sbjct 3508993 GGCGTGAAGCGTATCTCTGGTCTGATCTATGAGGAGACTCGTGGAGTTCTGAAGGTCTTC 3508934 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || | ||| ||||||||||| || || ||||| ||| Sbjct 3508933 CTGGAGAACGTAATCCGCGACGCCGTTACCTACACCGAGCACGCCAAGCGCAAGACGGTC 3508874 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| ||||||| | |||||||| | || || || || || | | ||||| || || Sbjct 3508873 ACCGCCATGGACGTGGTCTATGCGCTCAAGCGCCAGGGACGCACCCTCTATGGCTTCGGG 3508814 Query 16694 AGTTAATCTTCTAATC 16709 ||||| |||| ||| Sbjct 3508813 GGTTAAAGTTCTCATC 3508798 Score = 147 bits (162), Expect = 3e-31 Identities = 180/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || || ||||| || ||||| || || || ||||| ||| ||||||| ||||| Sbjct 3251593 TCTGCGTGACAATATCCAGGGTATCACTAAACCTGCCATCCGGCGTTTGGCTCGGCGTGG 3251652 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| ||||||||| | || || | |||| || |||| ||| | || | ||| | || Sbjct 3251653 TGGGGTCAAGCGTATTTCAGGTCTCATCTACGAGGAGACTCGCGGGGTGCTCAAGGTATT 3251712 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || ||| || |||| || ||| || ||| || |||||||| || || |||||||| Sbjct 3251713 TCTGGAGAATGTGATCCGCGACGCTGTCACCTACACTGAGCACGCCAAGCGCAAGACTGT 3251772 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | ||||| | ||||||||| | ||||| || || || | | ||||||| ||||| Sbjct 3251773 CACTGCTATGGACGTGGTCTATGCACTTAAACGCCAGGGTCGCACGCTTTATGGCTTTGG 3251832 Query 16693 AAGTTA 16698 |||| Sbjct 3251833 TGGTTA 3251838 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | ||||| ||||||||||| ||||| |||||||| ||||| Sbjct 3223970 CGCTAAGCGCCACCGCAAAGTGCTTCGTGATAACATCCAGGGAATTACCAAGCCTGCTAT 3224029 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||||||||||||||| || |||||| |||| || | |||| || |||| Sbjct 3224030 TCGGCGCTTGGCTCGTCGTGGTGGCGTTAAGCGTATCTCCGGCCTCATCTACGAGGAGAC 3224089 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | || | || || ||| || |||| || || | ||| ||||| Sbjct 3224090 CCGCGGGGTCCTCAAAGTGTTTCTGGAGAATGTGATCCGCGACGCCGTAACCTACACCGA 3224149 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||||||||| || | |||||| | || || || ||||||| || || Sbjct 3224150 GCACGCCAAGCGTAAGACTGTGACTGCTATGGATGTGGTTTACGCGCTGAAACGCCAGGG 3224209 Query 16672 CCG 16674 || Sbjct 3224210 GCG 3224212 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || || | | || || || || || ||||| || |||||||| || |||| Sbjct 3292456 CGCTAAGCGCCACCGGAAGGTC-CTGCGTGACAATATCCAGGGCATCACCAAACCTGCTA 3292398 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||| || || ||||| || || ||| |||| || | | ||||| |||| Sbjct 3292397 TCCGGCGCTTGGCCCGACGAGGTGGCGTAAAACGTATCTCGGGTCTCATTTATGAGGAGA 3292338 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || | ||| |||| || ||| ||| |||| || || | || || | Sbjct 3292337 CTCGCGGGGTCCTCAAGGTCTTTCTGGAGAACGTGATCCGGGACGCCGTTACTTACACGG 3292278 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||||||||| |||||||| | ||||| || | ||||| || | Sbjct 3292277 AGCACGCCAAGCGCAAGACTGTCACTGCCATGGATGTGGTCTACGCGCTCAAACGCCAGG 3292218 Query 16671 GCCG 16674 |||| Sbjct 3292217 GCCG 3292214 Score = 125 bits (138), Expect = 1e-24 Identities = 190/268 (71%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| || || | | | || || || |||||||| || || || || || || || Sbjct 3413139 GCTAAGCGCCACCGTA-AGGTATTGCGTGACAACATCCAGGGCATTACTAAACCTGCAAT 3413081 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| ||||| |||||||| || |||||| | ||||| | | ||||| |||| Sbjct 3413080 TCGGCGTCTCGCTCGCCGTGGTGGCGTGAAGCGTATTTCTGGCCTCATTTATGAGGAGAC 3413021 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | || | ||| || || | ||||| | ||| || || Sbjct 3413020 TCGCGGAGTGCTGAAGGTTTTTTTGGAGAATGTGATTCGCGATGCCGTGACCTACACTGA 3412961 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || ||||||||||| || |||||||| | ||||| || | ||||| ||||| Sbjct 3412960 ACACGCAAAGCGTAAGACTGTTACTGCCATGGATGTAGTCTACGCGCTCAAACGCCAAGG 3412901 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | ||||| || || ||||| Sbjct 3412900 CCGCACACTCTATGGCTTCGGCGGTTAA 3412873 >seq352 Length=2542345 Score = 114 bits (126), Expect = 2e-21 Identities = 182/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||| | | | | | ||||||||||||| || || || ||||| ||||| Sbjct 2009839 CGCTAAGCGACATAGGAAAGTTTTAAGAGATAACATCCAGGGGATTACGAAGCCTGCTAT 2009898 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| || || || || || || || ||||||| | | ||||| |||| Sbjct 2009899 TCGTCGTTTGGCGCGCCGCGGCGGCGTTAAACGCATCTCTGGTCTCATTTATGAGGAGAC 2009958 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| |||| | ||| | ||| || || | || || | || || || Sbjct 2009959 GCGCGGTGTTCTGAAAGTGTTCTTGGAGAATGTAATTCGGGACGCCGTTACTTACACAGA 2010018 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || || ||||| || || |||||||| | ||||| || |||| ||||| || Sbjct 2010019 GCATGCCAAGCGCAAGACGGTTACTGCCATGGATGTAGTCTACGCCCTGAAGCGTCAGGG 2010078 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 2010079 CCGCACACTCTACGGCTTTGG 2010099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79056456706500