Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq46 104 2e-17 seq3 98.7 8e-16 seq38 89.7 4e-13 seq20 86.0 5e-12 seq302 84.2 2e-11 seq16 84.2 2e-11 seq87 82.4 6e-11 >seq46 Length=21197313 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| || |||| || ||||||||||| || || |||| || || Sbjct 15668433 AAGATGCAGATTTTCGTACAAACCCTAACGGGAAAAACAATCACTTTCGAGGTCGAAACC 15668374 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 ||||| | | | | ||||| || || ||||| ||| | | || |||| Sbjct 15668373 TCGGACACGATCGAAAATGTAAAGGCGAAGATCCAGGATAAGGAAAGAATTCCTACTGAT 15668314 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATG-ACAAAACCATGGCCGATTA 115461 ||||| ||||| |||| ||| ||||| ||| | ||||||| || |||| || | || || Sbjct 15668313 CAGCAGAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGCAACC-TGTCTGACTA 15668255 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| ||||| ||| | ||| | ||||||||| | || || || Sbjct 15668254 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 15668204 >seq3 Length=52730029 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| | |||||||| ||||| || || || || || | || || Sbjct 39783296 AAGATGCAGATTTTCATAAAAACGCTAACGGGGAAGACGATCACTCTCAAGGTCGAACCC 39783237 Query 115343 AGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 || | | |||| || ||||| || || ||||| ||||| | || ||| Sbjct 39783236 TCGGATA--GATGGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 39783179 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 |||||| ||||| |||| ||| ||||| ||| | ||||||| | ||| || | || || Sbjct 39783178 TCAGCAGAGACTGATTTCTGCTGGCAAGCAACTGGAAGATGGACACACCCTGTCTGACTA 39783119 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 ||||||||||| ||||||||| | ||| | ||||||||| Sbjct 39783118 CAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGA 39783079 >seq38 Length=23493148 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| | || ||||||||| ||||| |||| ||| ||||| ||| | ||| Sbjct 5891005 GATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATTTTTGCTGGCAAGCAACTGGAA 5890946 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| ||| || | || || ||||||||||| ||||| ||| | ||| | |||||| Sbjct 5890945 GATGGACGCACCCTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTG 5890886 Query 115499 AGATTGCGAGGAGG 115512 ||| | || || || Sbjct 5890885 AGACTTCGTGGTGG 5890872 >seq20 Length=29555478 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| ||||| || ||||| || ||||| || || || || |||| || || Sbjct 26627854 AAGATGCAGATTTTCGTAAAAACCCTAACGGGGAAGACGATCACTCTCGAGGTCGAACCC 26627913 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || || | | | | ||||| || || |||| ||||| | || |||| Sbjct 26627914 TCAGATACAATCGAAAATGTAAAGGCCAAGATCCAGCATAAGGAAGGAATTCCTCCTGAT 26627973 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| ||||| |||| ||| ||| | ||| | ||||||| ||| || | || || Sbjct 26627974 CAGCAGAGACTGATTTTTGCTGGCGAGCAACTGGAAGATGGACGCACCCTGTCTGACTAC 26628033 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||||||| ||||| ||| | ||| | ||||||||| | || || || Sbjct 26628034 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGG 26628083 >seq302 Length=3335727 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 115399 TGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGA 115458 |||| |||| ||||| |||| ||| ||||| ||| ||||||||| | ||| || | || Sbjct 1096948 TGATGAGCAGAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACACACCCTGTCTGA 1097007 Query 115459 TTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||||||||| ||||| ||| | | | | ||||||||| | || || || Sbjct 1097008 CTACAACATTCAAAAGGAGTCCACTCTTCTTCTTGTGTTGAGACTTCGTGGTGG 1097061 >seq16 Length=33020160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| | || ||||||||| ||||| |||| ||| || || ||| | ||| Sbjct 11074085 GATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATTTTTGCTGGTAAGCAACTGGAA 11074144 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| ||| || | || || ||||||||||| ||||| ||| | ||| | |||||| Sbjct 11074145 GATGGACGCACCCTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTG 11074204 Query 115499 AGATTGCGAGGAGG 115512 ||| | || || || Sbjct 11074205 AGACTTCGTGGTGG 11074218 >seq87 Length=12919766 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| ||||| | || ||||||||| ||||| |||| ||| ||||| ||| | ||| Sbjct 9400241 GATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATTTTTGCTGGCAAGCAACTGGAA 9400182 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||| ||| || | || || ||||||||||| ||||| ||| | ||| | |||||| Sbjct 9400181 AATGGATGCACCCTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTG 9400122 Query 115499 AGA 115501 ||| Sbjct 9400121 AGA 9400119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425237730460000