Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq53 93.3 3e-14
seq66 91.5 1e-13
seq104 87.8 1e-12
seq99 87.8 1e-12
seq451 86.0 5e-12
seq170 86.0 5e-12
seq126 84.2 2e-11
>seq53
Length=19262973
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| ||||||||||| || ||||||||||| | | || | | |||
Sbjct 11236664 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCC 11236723
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||| ||||| || ||| |||| || ||||| ||||| || | ||||| |||||
Sbjct 11236724 TCCAGCTGTTTACCTGCAAAAATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCT 11236783
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || ||| || || | | | ||||| | ||||||| || | |||||||
Sbjct 11236784 TGGATTTTGGCT--TTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGAGTGATGG 11236841
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| || || ||||| | || ||||| ||||||||
Sbjct 11236842 TCTTGCCTGTCAGGGCCTTCACAAAGATCTGCAT 11236875
>seq66
Length=17239560
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/218 (70%), Gaps = 10/218 (5%)
Strand=Plus/Minus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| ||||| |||||||| || || ||||||||||| | | ||| | | ||
Sbjct 7151396 CAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTTCGGCCATC 7151337
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACG---CCCTCTTT 16839
||||| ||||| |||||| |||| || || || |||| |||| | | ||||| ||
Sbjct 7151336 CTCCAGCTGTTTACCCGCAAAAATCAGACGTTGCTGGT---CAGGGAGGATACCCTCCTT 7151280
Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897
||| || || ||| || || | | | |||| | ||||||| || | |||
Sbjct 7151279 GTCTTGGATTTTGGCT--TTGACATTCTCGATGATGTCACTGGGCTCCACCTCAAGAGTG 7151222
Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||| || || ||||| || || ||||| ||||||||
Sbjct 7151221 ATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 7151184
>seq104
Length=11152936
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/209 (70%), Gaps = 4/209 (2%)
Strand=Plus/Minus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
||||| || ||||| || || |||||||| || | | || | | || |||| ||
Sbjct 9999570 TGCAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 9999511
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
||||| ||| | || |||| ||| ||||| || | ||| || ||||| || ||
Sbjct 9999510 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 9999451
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| ||| || | | | ||||| | ||||||| ||||| ||||||||| || | |
Sbjct 9999450 GC--CTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGACAG 9999393
Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|||| || || ||||| ||||||||||||
Sbjct 9999392 TCAGGGTCTTTACAAAGATCTGCATTTTG 9999364
>seq99
Length=12215380
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | ||| |||| ||||| |||||||| || || ||||||||||| |
Sbjct 7048507 CCACCACGCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 7048448
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | ||||||| | ||| || ||| |||| || |||||||||| ||
Sbjct 7048447 AGAGTGCAGTCATCCTCCAGCTATTTACCAGCAAAAATCAGATGCTGTTGGTCAGGGGGG 7048388
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| || || ||| || || | | | ||||| | | |||||
Sbjct 7048387 ATACCCTCCTTGTCTTGGATTTTGGCT--TTGACATTCTCGATGGTGTCACTGAGCTCCA 7048330
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | |||||||| || || ||||| || || ||||| ||||||||
Sbjct 7048329 CCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACAAAGATCTGCAT 7048281
>seq451
Length=1225386
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/215 (69%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| ||||| |||||||| || | ||||||||||| | | || | | ||
Sbjct 1000161 CAGCACCAGGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCTGAGAGAGTGCGGCCATC 1000220
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
||||| ||||| |||||| |||| || ||||| ||||| || | ||||| |||||
Sbjct 1000221 CTCCAGCTGTTTACCCGCAAAAATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTC 1000280
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || ||| || || | | | ||||| | |||||| || | || |||
Sbjct 1000281 TTGGATTTTGGCT--TTGACATTCTCTATGGTGTCACTAGGCTCCACCTCAAGAGTAATG 1000338
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| || || ||||| || || ||||| ||||||||
Sbjct 1000339 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1000373
>seq170
Length=7561184
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/215 (69%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| ||||| |||||||| || || ||||||||||| | | || | | ||
Sbjct 6053211 CAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 6053270
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
||||| ||||| || ||| ||| ||| |||| ||||| |||| ||||| |||||
Sbjct 6053271 CTCCAGCTGTTTACCTGCAAAAACCAGCAGCTGCTGGTCAGGCGGCATACCCTCCTTGTC 6053330
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || ||| || || | | | ||||| | ||||||| || | ||||||
Sbjct 6053331 TTGGATTTTGGCT--TTGACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATG 6053388
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| || | ||||| || || ||||| ||||| ||
Sbjct 6053389 GTCTTGCTCGTCAGGGTCTTCACAAAGATCTGTAT 6053423
>seq126
Length=9965562
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | ||| |||| ||||| |||||||| || || ||||||||||| |
Sbjct 8584647 CCACCACGCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 8584706
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | ||||||| ||| | ||| || |||| || |||| ||||| ||
Sbjct 8584707 AGAGTGCGGCCATCCTCCAGCTGTGTACCCTCAAAAATCAGATGCTGCTGGTCAGGGGGG 8584766
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| || || ||| || || | | | ||||| | |||||||
Sbjct 8584767 ATACCCTCCTTGTCTTGGATTTTGGCT--TTGACATTCTCGATGGTGTCACTGGGCTCCA 8584824
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | |||||||| || || |||| || || ||||| ||||||||
Sbjct 8584825 CCTCAAGAGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 8584873
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404986791295000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |