Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq53 93.3 3e-14 seq66 91.5 1e-13 seq104 87.8 1e-12 seq99 87.8 1e-12 seq451 86.0 5e-12 seq170 86.0 5e-12 seq126 84.2 2e-11 >seq53 Length=19262973 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| ||||||||||| || ||||||||||| | | || | | ||| Sbjct 11236664 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCC 11236723 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| ||||| || ||| |||| || ||||| ||||| || | ||||| ||||| Sbjct 11236724 TCCAGCTGTTTACCTGCAAAAATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCT 11236783 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | ||||| | ||||||| || | ||||||| Sbjct 11236784 TGGATTTTGGCT--TTGACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGAGTGATGG 11236841 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| | || ||||| |||||||| Sbjct 11236842 TCTTGCCTGTCAGGGCCTTCACAAAGATCTGCAT 11236875 >seq66 Length=17239560 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/218 (70%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| |||||||| || || ||||||||||| | | ||| | | || Sbjct 7151396 CAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTTCGGCCATC 7151337 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACG---CCCTCTTT 16839 ||||| ||||| |||||| |||| || || || |||| |||| | | ||||| || Sbjct 7151336 CTCCAGCTGTTTACCCGCAAAAATCAGACGTTGCTGGT---CAGGGAGGATACCCTCCTT 7151280 Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 ||| || || ||| || || | | | |||| | ||||||| || | ||| Sbjct 7151279 GTCTTGGATTTTGGCT--TTGACATTCTCGATGATGTCACTGGGCTCCACCTCAAGAGTG 7151222 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || ||||| || || ||||| |||||||| Sbjct 7151221 ATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 7151184 >seq104 Length=11152936 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || ||||| || || |||||||| || | | || | | || |||| || Sbjct 9999570 TGCAGAGTTGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGC 9999511 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || |||| ||| ||||| || | ||| || ||||| || || Sbjct 9999510 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 9999451 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | ||||| | ||||||| ||||| ||||||||| || | | Sbjct 9999450 GC--CTTGACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGACAG 9999393 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| || || ||||| |||||||||||| Sbjct 9999392 TCAGGGTCTTTACAAAGATCTGCATTTTG 9999364 >seq99 Length=12215380 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| |||||||| || || ||||||||||| | Sbjct 7048507 CCACCACGCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 7048448 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| | ||| || ||| |||| || |||||||||| || Sbjct 7048447 AGAGTGCAGTCATCCTCCAGCTATTTACCAGCAAAAATCAGATGCTGTTGGTCAGGGGGG 7048388 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || ||| || || | | | ||||| | | ||||| Sbjct 7048387 ATACCCTCCTTGTCTTGGATTTTGGCT--TTGACATTCTCGATGGTGTCACTGAGCTCCA 7048330 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || ||||| || || ||||| |||||||| Sbjct 7048329 CCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACAAAGATCTGCAT 7048281 >seq451 Length=1225386 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| |||||||| || | ||||||||||| | | || | | || Sbjct 1000161 CAGCACCAGGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCTGAGAGAGTGCGGCCATC 1000220 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| ||||| |||||| |||| || ||||| ||||| || | ||||| ||||| Sbjct 1000221 CTCCAGCTGTTTACCCGCAAAAATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTC 1000280 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || ||| || || | | | ||||| | |||||| || | || ||| Sbjct 1000281 TTGGATTTTGGCT--TTGACATTCTCTATGGTGTCACTAGGCTCCACCTCAAGAGTAATG 1000338 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| || || ||||| |||||||| Sbjct 1000339 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 1000373 >seq170 Length=7561184 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| |||||||| || || ||||||||||| | | || | | || Sbjct 6053211 CAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 6053270 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| ||||| || ||| ||| ||| |||| ||||| |||| ||||| ||||| Sbjct 6053271 CTCCAGCTGTTTACCTGCAAAAACCAGCAGCTGCTGGTCAGGCGGCATACCCTCCTTGTC 6053330 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || ||| || || | | | ||||| | ||||||| || | |||||| Sbjct 6053331 TTGGATTTTGGCT--TTGACATTCTCAATGGTGTCACTGGGCTCCACCTCAAGAGTGATG 6053388 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || | ||||| || || ||||| ||||| || Sbjct 6053389 GTCTTGCTCGTCAGGGTCTTCACAAAGATCTGTAT 6053423 >seq126 Length=9965562 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| |||||||| || || ||||||||||| | Sbjct 8584647 CCACCACGCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 8584706 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| ||| | ||| || |||| || |||| ||||| || Sbjct 8584707 AGAGTGCGGCCATCCTCCAGCTGTGTACCCTCAAAAATCAGATGCTGCTGGTCAGGGGGG 8584766 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || ||| || || | | | ||||| | ||||||| Sbjct 8584767 ATACCCTCCTTGTCTTGGATTTTGGCT--TTGACATTCTCGATGGTGTCACTGGGCTCCA 8584824 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||| || || |||| || || ||||| |||||||| Sbjct 8584825 CCTCAAGAGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 8584873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404986791295000