Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq170 122 6e-23 seq281 113 3e-20 seq54 109 4e-19 seq143 105 4e-18 seq46 96.9 2e-15 seq16 96.9 2e-15 seq38 93.3 3e-14 seq20 93.3 3e-14 seq172 87.8 1e-12 seq343 86.0 4e-12 seq71 86.0 4e-12 seq25 86.0 4e-12 >seq170 Length=7561184 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || |||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 1130902 AAACCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 1130961 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1130962 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1130996 >seq281 Length=3633602 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||||| ||| | |||| || || ||| || || || || |||||||||||| Sbjct 126480 CCCCCTCTCAGACGAAGGACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 126539 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| | || || | |||||| || ||||| || | | || || || | |||| Sbjct 126540 AGAGTACGGCCATCTTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGG 126599 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||||||| || ||| ||| ||||||| | || || | ||||| Sbjct 126600 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 126659 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||||||||||||||| | |||||||| || |||||||| Sbjct 126660 TCAAGGGTAATAGTTTTACCCGTGAGAGTTTTCACAAAGATCTGCAT 126706 >seq54 Length=18522067 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||| |||| ||| |||| ||||| || |||||||| Sbjct 9631963 AAGCCCGTTCCCTTGGCTGTGGTTACGCTGGATTGTAGGTAGGGACAGTGGGAATCTCGT 9631904 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| | ||||||||||||||||||| Sbjct 9631903 TCATCCATTCATGTGTGTCACTAATTAGATGACGA 9631869 >seq143 Length=9160510 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || |||||||||| ||||| || || || || || || || ||||| ||||| Sbjct 9115224 ACCTCCCCTCAAACGCAGGACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGA 9115165 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || | ||| || | ||||| || ||||| || | | || || || | || Sbjct 9115164 CAGTGTGCGCTTGTCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGG 9115105 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || |||||||||||| ||| ||| || ||||||| | || || | || || Sbjct 9115104 GATGCCTTCTTTGTCTTGAATCTTTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTAC 9115045 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| | ||||| || ||||| ||||||||||||||||| |||||||| Sbjct 9115044 TTCAAGGGTAATGGTCTTACCAGTCAAGGTTTTCACGAAGATCTGCAT 9114997 >seq46 Length=21197313 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||| ||| | || Sbjct 15668218 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGTTGCGTCCATC 15668277 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | || ||||| | || | | ||| || || Sbjct 15668278 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGTAGGAATTCTTTCCTTATC 15668337 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | || || || |||| || || || || || || Sbjct 15668338 CTGGATCTTCGCCTTTACATTTTCGATCGTGTCCGAGGTTTCGACCTCGAAAGTGATTGT 15668397 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| ||||| | ||||| ||||| |||||||| || Sbjct 15668398 TTTTCCCGTTAGGGTTTGTACGAAAATCTGCATCTT 15668433 >seq16 Length=33020160 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||| ||| | || Sbjct 11074204 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGTCCATC 11074145 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | || ||||| | || | ||||| || || Sbjct 11074144 TTCCAGTTGCTTACCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 11074085 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | || |||||| ||| || || | || || || Sbjct 11074084 CTGGATCTTGGCCTTTACATTTTTGATTGTATCTGAGGGTTCGACCTCGAGAGTGATCGT 11074025 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | | |||| ||||| |||||||| || Sbjct 11074024 CTTCCCCGTTAGGTTTTTTACGAAAATCTGCATCTT 11073989 >seq38 Length=23493148 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||| ||| | || Sbjct 5890886 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGTCCATC 5890945 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | || ||||| | || | ||||| || || Sbjct 5890946 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 5891005 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | || ||||| || || || | || || || Sbjct 5891006 CTGGATCTTGGCCTTTACATTTTCGATCGTATCCGAGGGTTTGACCTCGAGAGTGATCGT 5891065 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||||| |||||| | ||| |||||||| || Sbjct 5891066 CTTCCCCGTCAGGGTTTTTAAGAAAATCTGCATCTT 5891101 >seq20 Length=29555478 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||| ||| | || Sbjct 26628069 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGTCCATC 26628010 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| | || ||||| || || | || ||||| | || | ||||| || | Sbjct 26628009 TTCCAGTTGCTCGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATG 26627950 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | || |||||| ||| || || | || || || Sbjct 26627949 CTGGATCTTGGCCTTTACATTTTCGATTGTATCTGAGGGTTCGACCTCGAGAGTGATCGT 26627890 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||| ||||| |||||||| || Sbjct 26627889 CTTCCCCGTTAGGGTTTTTACGAAAATCTGCATCTT 26627854 >seq172 Length=7263250 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||||||||| ||||||| ||| | || Sbjct 740210 CAACACAAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGACAGGGTGCGTCCATC 740151 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 |||| ||| || || ||||| || || | || ||||| | || | ||||| || || Sbjct 740150 TTCTAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 740091 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 || || ||| ||||| | | ||||| ||| || || | || || || Sbjct 740090 ATGGATCTTGGCCTTTACATTTTTTATTGTATCCGAGGGTTCGACCTCGAGAGTGATCGT 740031 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || | |||||| ||||| |||| ||| || Sbjct 740030 CTTCCCGGTTAGGGTTTTTACGAAAATCTTCATCTT 739995 >seq343 Length=2751252 Score = 86.0 bits (94), Expect = 4e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| |||| |||||| | Sbjct 2288084 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTTGACTATAGGTCTC-C 2288142 Query 20007 GGTAATATTTAGCCTTA 20023 | || ||||||||| Sbjct 2288143 TGCAAGTATTAGCCTTA 2288159 >seq71 Length=15614055 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/231 (68%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || |||||||||| |||| || || || || ||||| || ||||| |||| Sbjct 4796081 TACCTCCCCTCAAACGCAGAGCCAAGTGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAG 4796022 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | | | || || | | ||| || ||||| || | | || || || | || Sbjct 4796021 ACAGTGTATGCCCATCTTCCAGCTTTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGG 4795962 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 || |||||||||||| || ||| ||| ||||||| | || || | | | || | Sbjct 4795961 GGTTGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGTCTCTA 4795902 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGA--ATATCTGCAT 38317 | || | | ||||||||||||||| | |||||||| | | |||||||| Sbjct 4795901 CCTCAAGGGCAATAGTTTTACCCGTGAGAGTTTTCACAAAGAGATCTGCAT 4795851 >seq25 Length=26272902 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38106 AACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCG 38165 |||| | |||||||||| |||||||||||| ||||||| |||||| ||||| ||| Sbjct 16803879 AACATAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATTAGACAAGGTGCGTTCATCG 16803938 Query 38166 TCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCC 38225 || | ||| || ||||| || || | || ||||| | |||| ||||| || | | Sbjct 16803939 TCCAGTTGCAAGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGGATTCCTTCCTTATTC 16803998 Query 38226 ATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA-CTTTCAACTTCTAATGTAATAGT 38284 | || ||| ||||| | | |||| || | |||||| || || || || || Sbjct 16803999 TGGAACTTGGCCTTTACATTTTCTATCGTAT-TCAAGGGTTCAACCTCGAAAGTGATGGT 16804057 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | ||||| || || |||||||| || Sbjct 16804058 CTTCCCCGTTAGAGTTTTTACTAAAATCTGCATCTT 16804093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334863515535500