Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq170 122 6e-23
seq281 113 3e-20
seq54 109 4e-19
seq143 105 4e-18
seq46 96.9 2e-15
seq16 96.9 2e-15
seq38 93.3 3e-14
seq20 93.3 3e-14
seq172 87.8 1e-12
seq343 86.0 4e-12
seq71 86.0 4e-12
seq25 86.0 4e-12
>seq170
Length=7561184
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|| |||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 1130902 AAACCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 1130961
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 1130962 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1130996
>seq281
Length=3633602
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|| ||||||| ||| | |||| || || ||| || || || || ||||||||||||
Sbjct 126480 CCCCCTCTCAGACGAAGGACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 126539
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | ||| | || || | |||||| || ||||| || | | || || || | ||||
Sbjct 126540 AGAGTACGGCCATCTTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGG 126599
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||||||||| || ||| ||| ||||||| | || || | |||||
Sbjct 126600 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 126659
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | ||||||||||||||||| | |||||||| || ||||||||
Sbjct 126660 TCAAGGGTAATAGTTTTACCCGTGAGAGTTTTCACAAAGATCTGCAT 126706
>seq54
Length=18522067
Score = 109 bits (120), Expect = 4e-19
Identities = 81/95 (85%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||| |||| ||| |||| ||||| || ||||||||
Sbjct 9631963 AAGCCCGTTCCCTTGGCTGTGGTTACGCTGGATTGTAGGTAGGGACAGTGGGAATCTCGT 9631904
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| |||||| | |||||||||||||||||||
Sbjct 9631903 TCATCCATTCATGTGTGTCACTAATTAGATGACGA 9631869
>seq143
Length=9160510
Score = 105 bits (116), Expect = 4e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
||| || |||||||||| ||||| || || || || || || || ||||| |||||
Sbjct 9115224 ACCTCCCCTCAAACGCAGGACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGA 9115165
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|| || | ||| || | ||||| || ||||| || | | || || || | ||
Sbjct 9115164 CAGTGTGCGCTTGTCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGG 9115105
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
|| |||||||||||| ||| ||| || ||||||| | || || | || ||
Sbjct 9115104 GATGCCTTCTTTGTCTTGAATCTTTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTAC 9115045
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||| | ||||| || ||||| ||||||||||||||||| ||||||||
Sbjct 9115044 TTCAAGGGTAATGGTCTTACCAGTCAAGGTTTTCACGAAGATCTGCAT 9114997
>seq46
Length=21197313
Score = 96.9 bits (106), Expect = 2e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||||| |||||||||||| ||||| ||||||| ||| | ||
Sbjct 15668218 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGTTGCGTCCATC 15668277
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| || || ||||| || || | || ||||| | || | | ||| || ||
Sbjct 15668278 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGTAGGAATTCTTTCCTTATC 15668337
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| ||||| | || || || |||| || || || || || ||
Sbjct 15668338 CTGGATCTTCGCCTTTACATTTTCGATCGTGTCCGAGGTTTCGACCTCGAAAGTGATTGT 15668397
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
||| ||||| | ||||| ||||| |||||||| ||
Sbjct 15668398 TTTTCCCGTTAGGGTTTGTACGAAAATCTGCATCTT 15668433
>seq16
Length=33020160
Score = 96.9 bits (106), Expect = 2e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||||| |||||||||||| ||||| ||||||| ||| | ||
Sbjct 11074204 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGTCCATC 11074145
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| || || ||||| || || | || ||||| | || | ||||| || ||
Sbjct 11074144 TTCCAGTTGCTTACCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 11074085
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| ||||| | || |||||| ||| || || | || || ||
Sbjct 11074084 CTGGATCTTGGCCTTTACATTTTTGATTGTATCTGAGGGTTCGACCTCGAGAGTGATCGT 11074025
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| ||||| | | |||| ||||| |||||||| ||
Sbjct 11074024 CTTCCCCGTTAGGTTTTTTACGAAAATCTGCATCTT 11073989
>seq38
Length=23493148
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||||| |||||||||||| ||||| ||||||| ||| | ||
Sbjct 5890886 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGTCCATC 5890945
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| || || ||||| || || | || ||||| | || | ||||| || ||
Sbjct 5890946 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 5891005
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| ||||| | || ||||| || || || | || || ||
Sbjct 5891006 CTGGATCTTGGCCTTTACATTTTCGATCGTATCCGAGGGTTTGACCTCGAGAGTGATCGT 5891065
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| ||||||| |||||| | ||| |||||||| ||
Sbjct 5891066 CTTCCCCGTCAGGGTTTTTAAGAAAATCTGCATCTT 5891101
>seq20
Length=29555478
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||||| |||||||||||| ||||| ||||||| ||| | ||
Sbjct 26628069 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGTCCATC 26628010
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| | || ||||| || || | || ||||| | || | ||||| || |
Sbjct 26628009 TTCCAGTTGCTCGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATG 26627950
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| ||||| | || |||||| ||| || || | || || ||
Sbjct 26627949 CTGGATCTTGGCCTTTACATTTTCGATTGTATCTGAGGGTTCGACCTCGAGAGTGATCGT 26627890
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| ||||| | |||||| ||||| |||||||| ||
Sbjct 26627889 CTTCCCCGTTAGGGTTTTTACGAAAATCTGCATCTT 26627854
>seq172
Length=7263250
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||||| |||||||||||||||||| ||||||| ||| | ||
Sbjct 740210 CAACACAAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGACAGGGTGCGTCCATC 740151
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|||| ||| || || ||||| || || | || ||||| | || | ||||| || ||
Sbjct 740150 TTCTAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 740091
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
|| || ||| ||||| | | ||||| ||| || || | || || ||
Sbjct 740090 ATGGATCTTGGCCTTTACATTTTTTATTGTATCCGAGGGTTCGACCTCGAGAGTGATCGT 740031
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| || || | |||||| ||||| |||| ||| ||
Sbjct 740030 CTTCCCGGTTAGGGTTTTTACGAAAATCTTCATCTT 739995
>seq343
Length=2751252
Score = 86.0 bits (94), Expect = 4e-12
Identities = 66/77 (86%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| | |||||||||| |||| |||||| |
Sbjct 2288084 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTTGACTATAGGTCTC-C 2288142
Query 20007 GGTAATATTTAGCCTTA 20023
| || |||||||||
Sbjct 2288143 TGCAAGTATTAGCCTTA 2288159
>seq71
Length=15614055
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/231 (68%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||| || |||||||||| |||| || || || || ||||| || ||||| ||||
Sbjct 4796081 TACCTCCCCTCAAACGCAGAGCCAAGTGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAG 4796022
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||| | | | || || | | ||| || ||||| || | | || || || | ||
Sbjct 4796021 ACAGTGTATGCCCATCTTCCAGCTTTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGG 4795962
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
|| |||||||||||| || ||| ||| ||||||| | || || | | | || |
Sbjct 4795961 GGTTGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGTCTCTA 4795902
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGA--ATATCTGCAT 38317
| || | | ||||||||||||||| | |||||||| | | ||||||||
Sbjct 4795901 CCTCAAGGGCAATAGTTTTACCCGTGAGAGTTTTCACAAAGAGATCTGCAT 4795851
>seq25
Length=26272902
Score = 86.0 bits (94), Expect = 4e-12
Identities = 150/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 38106 AACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCG 38165
|||| | |||||||||| |||||||||||| ||||||| |||||| ||||| |||
Sbjct 16803879 AACATAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATTAGACAAGGTGCGTTCATCG 16803938
Query 38166 TCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCC 38225
|| | ||| || ||||| || || | || ||||| | |||| ||||| || | |
Sbjct 16803939 TCCAGTTGCAAGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGGATTCCTTCCTTATTC 16803998
Query 38226 ATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA-CTTTCAACTTCTAATGTAATAGT 38284
| || ||| ||||| | | |||| || | |||||| || || || || ||
Sbjct 16803999 TGGAACTTGGCCTTTACATTTTCTATCGTAT-TCAAGGGTTCAACCTCGAAAGTGATGGT 16804057
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| ||||| | ||||| || || |||||||| ||
Sbjct 16804058 CTTCCCCGTTAGAGTTTTTACTAAAATCTGCATCTT 16804093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334863515535500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |