Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq143 98.7 1e-15 seq53 98.7 1e-15 seq99 96.9 3e-15 seq281 95.1 1e-14 seq451 93.3 4e-14 seq126 87.8 2e-12 seq66 86.0 6e-12 seq31 86.0 6e-12 seq78 84.2 2e-11 seq71 82.4 8e-11 >seq143 Length=9160510 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | |||||||| || || || | | | || || || || ||||||||||| | Sbjct 9115223 CCTCCCCTCAAACGCAGGACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 9115164 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||| || || ||||| || | | |||| | | ||| ||||| ||||| Sbjct 9115163 AGTGTGCGCTTGTCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGG 9115104 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| | |||| ||| | | || | |||||| | | ||| || Sbjct 9115103 ATGCCTTCTTTGTC-TTGAATCTTTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTAC 9115045 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||||| ||||| || || |||||||| Sbjct 9115044 TTCAAGGGTAATGGTCTTACCAGTCAAGGTTTTCACGAAGATCTGCAT 9114997 >seq53 Length=19262973 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||| || ||||| || |||||||| | | Sbjct 11236682 GACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTACCTGCA 11236741 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || |||||||| ||||| || || ||||| || ||||| |||||| ||| | Sbjct 11236742 AAAATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCTTGGATTTTGGCTTTGACA 11236801 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||| | || | || || || ||||| | || Sbjct 11236802 TTCTCGATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCTGTCAGGGCCTTC 11236861 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 11236862 ACAAAGATCTGCAT 11236875 >seq99 Length=12215380 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | | ||||| || || ||||||||||| Sbjct 7048508 GCCACCACGCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 7048449 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| | ||||| || | |||||| | | | || ||| |||||||||| || || Sbjct 7048448 GAGAGTGCAGTCATCCTCCAGCTATTTACCAGCAAAAATCAGATGCTGTTGGTCAGGGGG 7048389 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| |||||| ||| | | || | |||||| | |||||| Sbjct 7048388 GATACCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGAGCTCCAC 7048329 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || ||||| || |||||||| |||||||| Sbjct 7048328 CTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACAAAGATCTGCAT 7048281 >seq281 Length=3633602 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | || | || | | | || || || || |||||||| || | Sbjct 126480 CCCCCTCTCAGACGAAGGACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 126539 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || |||||||| || | | |||| | | ||| ||||| || || Sbjct 126540 AGAGTACGGCCATCTTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGG 126599 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| ||| || | | || | |||||| | | ||| ||| Sbjct 126600 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 126659 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || |||||||| ||||| |||||||| Sbjct 126660 TCAAGGGTAATAGTTTTACCCGTGAGAGTTTTCACAAAGATCTGCAT 126706 >seq451 Length=1225386 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || | ||||||||||| | ||| || ||||| || |||||||| | | Sbjct 1000180 GACTCTTTCTAGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTACCCGCA 1000239 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || |||||||| ||||| || || ||||| || ||||| |||||| ||| | Sbjct 1000240 AAAATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTGGATTTTGGCTTTGACA 1000299 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||| | || | || || || ||||| || || Sbjct 1000300 TTCTCTATGGTGTCACTAGGCTCCACCTCAAGAGTAATGGTCTTGCCTGTCAGGGTCTTC 1000359 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 1000360 ACAAAGATCTGCAT 1000373 >seq126 Length=9965562 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| || | || | | | ||||| || || ||||||||||| Sbjct 8584646 GCCACCACGCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 8584705 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || ||||| || ||| |||| | | || ||| |||| ||||| || || Sbjct 8584706 GAGAGTGCGGCCATCCTCCAGCTGTGTACCCTCAAAAATCAGATGCTGCTGGTCAGGGGG 8584765 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| |||||| ||| | | || | |||||| | | |||||| Sbjct 8584766 GATACCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCAC 8584825 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || |||| || || ||||| |||||||| Sbjct 8584826 CTCAAGAGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 8584873 >seq66 Length=17239560 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 138395 GCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC 138454 ||| ||||| || | || | | | ||||| || || ||||||||||| | ||| | Sbjct 7151403 GCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTTC 7151344 Query 138455 GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTT 138514 | ||||| || |||||||| | | | || ||||| || ||||| || | ||||| | Sbjct 7151343 GGCCATCCTCCAGCTGTTTACCCGCAAAAATCAGACGTTGCTGGTCAGGGAGGATACCCT 7151284 Query 138515 CTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCG 138574 | ||||| |||||| ||| | | || | | |||| | | ||||||||| | | Sbjct 7151283 CCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGATGTCACTGGGCTCCACCTCAAGAG 7151224 Query 138575 TCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | | || || || ||||| || || ||||| |||||||| Sbjct 7151223 TGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 7151184 >seq31 Length=26307832 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| ||| | | | | | ||||| || || |||||||||| || Sbjct 23303231 GCCACCACGCAGACGCAGAACCAGGGGCAGGGTGGACTCTTTCTGGATGTTGTAGT--CT 23303288 Query 138447 CATAGTACGCG--AGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGA 138504 | || | ||| ||||| || ||||||| | | | || |||||||| ||||| | Sbjct 23303289 GAGAGAATGCGGACATCCTCCAGCTGTTTACTCGCAAAAATCAGACGCTGCTGGTCAGTG 23303348 Query 138505 GGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||| || ||||| |||||| ||| | | | | |||||| | | |||| Sbjct 23303349 GGGATACCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTGGATGGTGTCACTAGGCTCC 23303408 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | | || || ||||| || || ||||| |||||||| Sbjct 23303409 ACCTCAAGGGTAATGGGCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 23303458 >seq78 Length=14163838 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 138394 CGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTA 138453 |||| ||||| || | ||| | | | ||||| || || ||||||||||| | ||| Sbjct 4568731 CGCAGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTG 4568790 Query 138454 CGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCT 138513 || ||||| | |||||||| | | | || |||||||||| ||| || | ||||| Sbjct 4568791 CGGCCATCCTCCTGCTGTTTACCCGCAAAAATCAGACGCTGTTTGTCAGGGAGGATACCC 4568850 Query 138514 TCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACC 138573 | ||||| |||||| ||| | | | | |||||| | | ||||||||| Sbjct 4568851 TACTTGTCTTGGATTTTGGCTTTGATATTCTGGATGGTGTCACTGGGCTCCACCTCAGGA 4568910 Query 138574 GTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || || || ||||| || || ||||| |||||||| Sbjct 4568911 GTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4568951 >seq71 Length=15614055 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/229 (68%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | |||||||| | | || || | | | || || ||||| ||||||||||| | Sbjct 4796079 CCTCCCCTCAAACGCAGAGCCAAGTGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGAC 4796020 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || || | ||| || | | |||| | | ||| ||||| || || Sbjct 4796019 AGTGTATGCCCATCTTCCAGCTTTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGGGGG 4795960 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 | ||||||||||| ||| ||| || | | || | |||||| | | ||| ||| Sbjct 4795959 TTGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGTCTCTACC 4795900 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA--AAATCTGCAT 138614 || | | | |||||||| || |||||||| |||| | |||||||| Sbjct 4795899 TCAAGGGCAATAGTTTTACCCGTGAGAGTTTTCACAAAGAGATCTGCAT 4795851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496135232760000