Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq281 95.1 9e-15
seq172 93.3 3e-14
seq87 89.7 4e-13
seq38 87.8 1e-12
seq59 86.0 4e-12
seq20 84.2 2e-11
seq21 82.4 5e-11
>seq281
Length=3633602
Score = 95.1 bits (104), Expect = 9e-15
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033
|| ||||| || ||||| || ||||||||||| ||| | | | ||||| | ||||
Sbjct 126504 TGCAGGGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTACGGCCATCTTCCAGTTGT 126563
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092
|| ||||| | ||||| | ||| ||||| || || ||||| ||||| || |||
Sbjct 126564 TTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCTTGGATCTTT 126623
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
|| || ||| | || || || || || || || || | |||||| |||||||| ||
Sbjct 126624 GC-CTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATAGTTTTACCCGT 126682
Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176
|||||||| ||||| || |||||
Sbjct 126683 GAGAGTTTTCACAAAGATCTGCAT 126706
>seq172
Length=7263250
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008
|||||| || | ||| || || | |||||| || || || ||||| || ||||| ||
Sbjct 740225 GCCACCGCGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGA 740166
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
|| | | | ||||||| ||| |||||||| | |||| | ||| || || ||
Sbjct 740165 CAGGGTGCGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 740106
Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|||||||||||| ||| || ||| |||||| ||| ||| ||||| ||| ||
Sbjct 740105 AATTCCTTCCTTATCATGGATCTTGGCCTTTACATTTTTTATTGTATCCGAGGGTTCGAC 740046
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| | || || || || || || || |||||||| ||||| | ||| ||
Sbjct 740045 CTCGAGAGTGATCGTCTTCCCGGTTAGGGTTTTTACGAAAATCTTCATCTT 739995
>seq87
Length=12919766
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| | | ||| || || | |||||| || || || ||||| |||||||| ||
Sbjct 9400106 TGCCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 9400165
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
|| | | | | ||| | ||| |||||||| | |||| | ||| || || |
Sbjct 9400166 ACAGGGTGCATCCATTTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAG 9400225
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
||||||||||||| || || ||| |||||| |||| || ||||| ||| |
Sbjct 9400226 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATTGTATCCGAGCGTTCGA 9400285
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
| || | || || || || ||||| || | |||||||||||| ||||| ||
Sbjct 9400286 CCTCGAGAGTGATCGTCTTCCCTGTTAGGGCTTTTACAAAAATCTGCATCTT 9400337
>seq38
Length=23493148
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008
|||||| || | ||| || || | |||||| || || || ||||| |||||||| ||
Sbjct 5890871 GCCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 5890930
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
|| | | | ||||| | ||| |||||||| | |||| | ||| || || ||
Sbjct 5890931 CAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 5890990
Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|||||||||||| || || ||| |||||| |||| || ||||| || ||
Sbjct 5890991 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATCGTATCCGAGGGTTTGAC 5891050
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| | || || || || || ||||| ||||||| ||||| ||||| ||
Sbjct 5891051 CTCGAGAGTGATCGTCTTCCCCGTCAGGGTTTTTAAGAAAATCTGCATCTT 5891101
>seq59
Length=18190503
Score = 86.0 bits (94), Expect = 4e-12
Identities = 159/232 (69%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008
|||||| || | | | || || | |||||| || || || ||||| |||||||| ||
Sbjct 6109919 GCCACCACGAAGTGTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 6109978
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
|| | | | ||||| | ||| |||||||| | |||| | ||| || | ||
Sbjct 6109979 CAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATGAGGAGG 6110038
Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|||||||||||| || || ||| |||||| |||| || ||||| | ||| ||
Sbjct 6110039 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATCGTATCCCAGAATTCGAC 6110098
Query 15129 GTCTAAGGTAATGGTTTTAC-CTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| | || || || || | |||| ||||||||||| ||||| | ||| ||
Sbjct 6110099 CTCGAGAGTGATCGTCTTCCTCTGTTAGAGTTTTTACGAAAATCTTCATCTT 6110150
>seq20
Length=29555478
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008
|||||| || | ||| || || | |||||| || || || ||||| |||||||| ||
Sbjct 26628084 GCCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 26628025
Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068
|| | | | ||||| | ||| | |||||| | |||| | ||| || || ||
Sbjct 26628024 CAGGGTGCGTCCATCTTCCAGTTGCTCGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 26627965
Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128
|||||||||||| | || ||| |||||| |||| || ||||| ||| ||
Sbjct 26627964 AATTCCTTCCTTATGCTGGATCTTGGCCTTTACATTTTCGATTGTATCTGAGGGTTCGAC 26627905
Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| | || || || || || || || |||||||| ||||| ||||| ||
Sbjct 26627904 CTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTTACGAAAATCTGCATCTT 26627854
>seq21
Length=29174111
Score = 82.4 bits (90), Expect = 5e-11
Identities = 161/233 (69%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008
|||||| || | || || || | |||||| || || || || || |||||||| ||
Sbjct 10740787 GCCACCACGAAGCCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGA 10740728
Query 15009 GAGAAT-TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
|| | | || | ||||| ||||| || ||||| | |||| | ||| || || |
Sbjct 10740727 CAGGGTGTGTC-CATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGCTGATCAAGAG 10740669
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATT-TTCT 15126
|||||||| |||| || | || ||| ||||| ||| || |||| ||| |||
Sbjct 10740668 GAATTCCTCCCTTATCCTAGATCTTGGCCTTTACTTTTTTGATCATATC-CTAGGGTTCG 10740610
Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| || | || || | || ||||| ||||||||||||||||| ||||| ||
Sbjct 10740609 ACCTCAAGAGTGATCATCTTCCCTGTTAGAGTTTTTACAAAAATCTGCATCTT 10740557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357302707842500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |