Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq281 95.1 9e-15 seq172 93.3 3e-14 seq87 89.7 4e-13 seq38 87.8 1e-12 seq59 86.0 4e-12 seq20 84.2 2e-11 seq21 82.4 5e-11 >seq281 Length=3633602 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || ||||| || ||||||||||| ||| | | | ||||| | |||| Sbjct 126504 TGCAGGGTGGATTCTTTCTGGATGTTGTAATCAGACAGAGTACGGCCATCTTCCAGTTGT 126563 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 || ||||| | ||||| | ||| ||||| || || ||||| ||||| || ||| Sbjct 126564 TTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCTTGGATCTTT 126623 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || ||| | || || || || || || || || | |||||| |||||||| || Sbjct 126624 GC-CTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATAGTTTTACCCGT 126682 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| ||||| || ||||| Sbjct 126683 GAGAGTTTTCACAAAGATCTGCAT 126706 >seq172 Length=7263250 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || | ||| || || | |||||| || || || ||||| || ||||| || Sbjct 740225 GCCACCGCGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGA 740166 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | ||||||| ||| |||||||| | |||| | ||| || || || Sbjct 740165 CAGGGTGCGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 740106 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||| ||| || ||| |||||| ||| ||| ||||| ||| || Sbjct 740105 AATTCCTTCCTTATCATGGATCTTGGCCTTTACATTTTTTATTGTATCCGAGGGTTCGAC 740046 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || || || || || || || |||||||| ||||| | ||| || Sbjct 740045 CTCGAGAGTGATCGTCTTCCCGGTTAGGGTTTTTACGAAAATCTTCATCTT 739995 >seq87 Length=12919766 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| | | ||| || || | |||||| || || || ||||| |||||||| || Sbjct 9400106 TGCCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 9400165 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | | | ||| | ||| |||||||| | |||| | ||| || || | Sbjct 9400166 ACAGGGTGCATCCATTTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAG 9400225 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||||||||| || || ||| |||||| |||| || ||||| ||| | Sbjct 9400226 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATTGTATCCGAGCGTTCGA 9400285 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || | || || || || ||||| || | |||||||||||| ||||| || Sbjct 9400286 CCTCGAGAGTGATCGTCTTCCCTGTTAGGGCTTTTACAAAAATCTGCATCTT 9400337 >seq38 Length=23493148 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || | ||| || || | |||||| || || || ||||| |||||||| || Sbjct 5890871 GCCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 5890930 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | ||||| | ||| |||||||| | |||| | ||| || || || Sbjct 5890931 CAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 5890990 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||| || || ||| |||||| |||| || ||||| || || Sbjct 5890991 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATCGTATCCGAGGGTTTGAC 5891050 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || || || || || ||||| ||||||| ||||| ||||| || Sbjct 5891051 CTCGAGAGTGATCGTCTTCCCCGTCAGGGTTTTTAAGAAAATCTGCATCTT 5891101 >seq59 Length=18190503 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || | | | || || | |||||| || || || ||||| |||||||| || Sbjct 6109919 GCCACCACGAAGTGTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 6109978 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | ||||| | ||| |||||||| | |||| | ||| || | || Sbjct 6109979 CAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATGAGGAGG 6110038 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||| || || ||| |||||| |||| || ||||| | ||| || Sbjct 6110039 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATCGTATCCCAGAATTCGAC 6110098 Query 15129 GTCTAAGGTAATGGTTTTAC-CTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || || || || | |||| ||||||||||| ||||| | ||| || Sbjct 6110099 CTCGAGAGTGATCGTCTTCCTCTGTTAGAGTTTTTACGAAAATCTTCATCTT 6110150 >seq20 Length=29555478 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || | ||| || || | |||||| || || || ||||| |||||||| || Sbjct 26628084 GCCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 26628025 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | ||||| | ||| | |||||| | |||| | ||| || || || Sbjct 26628024 CAGGGTGCGTCCATCTTCCAGTTGCTCGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 26627965 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 |||||||||||| | || ||| |||||| |||| || ||||| ||| || Sbjct 26627964 AATTCCTTCCTTATGCTGGATCTTGGCCTTTACATTTTCGATTGTATCTGAGGGTTCGAC 26627905 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || || || || || || || |||||||| ||||| ||||| || Sbjct 26627904 CTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTTACGAAAATCTGCATCTT 26627854 >seq21 Length=29174111 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || | || || || | |||||| || || || || || |||||||| || Sbjct 10740787 GCCACCACGAAGCCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGA 10740728 Query 15009 GAGAAT-TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | || | ||||| ||||| || ||||| | |||| | ||| || || | Sbjct 10740727 CAGGGTGTGTC-CATCTTCCAATTGCTTACCAGCAAAAATCAGTCTCTGCTGATCAAGAG 10740669 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATT-TTCT 15126 |||||||| |||| || | || ||| ||||| ||| || |||| ||| ||| Sbjct 10740668 GAATTCCTCCCTTATCCTAGATCTTGGCCTTTACTTTTTTGATCATATC-CTAGGGTTCG 10740610 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || | || || | || ||||| ||||||||||||||||| ||||| || Sbjct 10740609 ACCTCAAGAGTGATCATCTTCCCTGTTAGAGTTTTTACAAAAATCTGCATCTT 10740557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357302707842500