Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq281 100 3e-16
seq87 89.7 5e-13
seq8 89.7 5e-13
seq143 87.8 2e-12
seq12 87.8 2e-12
>seq281
Length=3633602
Score = 100 bits (110), Expect = 3e-16
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189
|| || ||||| || ||||| || ||||| || ||||| ||| | | | ||| |
Sbjct 126498 ACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAATCA--GACAGAGTACGGCCATCTT 126555
Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249
||| |||||| || || | ||||||| |||||||| || || ||||||||||| ||||
Sbjct 126556 CCAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCTT 126615
Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309
| || ||| |||| || | |||||| | ||| || || || |||| ||||
Sbjct 126616 GGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATAGTTT 126675
Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| || || |||||||| ||||| || |||||
Sbjct 126676 TACCCGTGAGAGTTTTCACAAAGATCTGCAT 126706
>seq87
Length=12919766
Score = 89.7 bits (98), Expect = 5e-13
Identities = 151/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182
|| |||||||| ||||| || || || |||||||| || || || || | |||
Sbjct 9400117 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCAT 9400176
Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242
|| |||| ||| || || || | |||| || ||||| || || ||||| |||||
Sbjct 9400177 CCATTTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCC 9400236
Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302
||||| || || || || | ||| | || || || ||||| ||||||||
Sbjct 9400237 TTATCCTGGATCTTGGCCTTTACATTTTCGATTGTATCCGAGCGTTCGACCTCGAGAGTG 9400296
Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
| ||| || || ||||| | |||||||||||| ||||||
Sbjct 9400297 ATCGTCTTCCCTGTTAGGGCTTTTACAAAAATCTGCATC 9400335
>seq8
Length=38990876
Score = 89.7 bits (98), Expect = 5e-13
Identities = 151/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182
|| |||||||| ||||| || || || |||||||| || || || || | |||
Sbjct 3001663 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGT 3001604
Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242
| | |||| ||| || || || | ||||||| ||||| || || | ||| |||||
Sbjct 3001603 CCAACTTCCAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGAAATTCCTTCC 3001544
Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302
||||| || || || || | || | || || || | ||||| ||||||||
Sbjct 3001543 TTATCCTGGATCTTGGCCTTTACATTTTTGATCGTATCCGAGGGTTCGACCTCGAGAGTG 3001484
Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
| | | || || ||||| |||||||||||||| ||||||
Sbjct 3001483 ATCATCTTCCCCGTTAGGGTTTTTACAAAAATCTGCATC 3001445
>seq143
Length=9160510
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/206 (70%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAAT--CGTCCAATT 45195
||||| || ||||| || ||||| || || || ||| || | | | | |||| |
Sbjct 9115199 TGCAGGGTAGATTCTTTCTGGATGTTGTAGTCA--GACAGTGTGCGCTTGTCTTCCAGCT 9115142
Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255
|||| || || | ||||||| |||||||| || || ||||||||||| |||||||| |
Sbjct 9115141 GTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGAATCT 9115082
Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315
|| ||||| || | |||||| | ||| ||||| || |||| || || || |
Sbjct 9115081 TTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTACCAG 9115022
Query 45316 TTAGAGTTTTTACAAAAATTTGCATC 45341
| | ||||| || || || ||||||
Sbjct 9115021 TCAAGGTTTTCACGAAGATCTGCATC 9114996
>seq12
Length=37268909
Score = 87.8 bits (96), Expect = 2e-12
Identities = 93/121 (77%), Gaps = 4/121 (3%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195
|||||||| ||||| |||||||| |||||||| ||| || | | ||| |||| ||
Sbjct 28034345 TGCAGCGTAGATTCTTTTTGGATGTTATAATCA--GACAGTGTGTGCCCATCTTCCAGTT 28034288
Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255
|||| || || | ||||||| |||||||| || || ||||||||||| ||||| || |
Sbjct 28034287 GTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCT 28034228
Query 45256 T 45256
|
Sbjct 28034227 T 28034227
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451887374180000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |