Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq281 100 3e-16 seq87 89.7 5e-13 seq8 89.7 5e-13 seq143 87.8 2e-12 seq12 87.8 2e-12 >seq281 Length=3633602 Score = 100 bits (110), Expect = 3e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || || ||||| || ||||| || ||||| || ||||| ||| | | | ||| | Sbjct 126498 ACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAATCA--GACAGAGTACGGCCATCTT 126555 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||| |||||| || || | ||||||| |||||||| || || ||||||||||| |||| Sbjct 126556 CCAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGGATGCCTTCTTTGTCTT 126615 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | || ||| |||| || | |||||| | ||| || || || |||| |||| Sbjct 126616 GGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATAGTTT 126675 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || |||||||| ||||| || ||||| Sbjct 126676 TACCCGTGAGAGTTTTCACAAAGATCTGCAT 126706 >seq87 Length=12919766 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 || |||||||| ||||| || || || |||||||| || || || || | ||| Sbjct 9400117 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCAT 9400176 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 || |||| ||| || || || | |||| || ||||| || || ||||| ||||| Sbjct 9400177 CCATTTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCC 9400236 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302 ||||| || || || || | ||| | || || || ||||| |||||||| Sbjct 9400237 TTATCCTGGATCTTGGCCTTTACATTTTCGATTGTATCCGAGCGTTCGACCTCGAGAGTG 9400296 Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||| || || ||||| | |||||||||||| |||||| Sbjct 9400297 ATCGTCTTCCCTGTTAGGGCTTTTACAAAAATCTGCATC 9400335 >seq8 Length=38990876 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 || |||||||| ||||| || || || |||||||| || || || || | ||| Sbjct 3001663 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGT 3001604 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 | | |||| ||| || || || | ||||||| ||||| || || | ||| ||||| Sbjct 3001603 CCAACTTCCAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAGAAATTCCTTCC 3001544 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTA 45302 ||||| || || || || | || | || || || | ||||| |||||||| Sbjct 3001543 TTATCCTGGATCTTGGCCTTTACATTTTTGATCGTATCCGAGGGTTCGACCTCGAGAGTG 3001484 Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | | | || || ||||| |||||||||||||| |||||| Sbjct 3001483 ATCATCTTCCCCGTTAGGGTTTTTACAAAAATCTGCATC 3001445 >seq143 Length=9160510 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAAT--CGTCCAATT 45195 ||||| || ||||| || ||||| || || || ||| || | | | | |||| | Sbjct 9115199 TGCAGGGTAGATTCTTTCTGGATGTTGTAGTCA--GACAGTGTGCGCTTGTCTTCCAGCT 9115142 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 |||| || || | ||||||| |||||||| || || ||||||||||| |||||||| | Sbjct 9115141 GTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGAATCT 9115082 Query 45256 TTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 || ||||| || | |||||| | ||| ||||| || |||| || || || | Sbjct 9115081 TTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTACCAG 9115022 Query 45316 TTAGAGTTTTTACAAAAATTTGCATC 45341 | | ||||| || || || |||||| Sbjct 9115021 TCAAGGTTTTCACGAAGATCTGCATC 9114996 >seq12 Length=37268909 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/121 (77%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAATT 45195 |||||||| ||||| |||||||| |||||||| ||| || | | ||| |||| || Sbjct 28034345 TGCAGCGTAGATTCTTTTTGGATGTTATAATCA--GACAGTGTGTGCCCATCTTCCAGTT 28034288 Query 45196 GTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTT 45255 |||| || || | ||||||| |||||||| || || ||||||||||| ||||| || | Sbjct 28034287 GTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCTTGGATCT 28034228 Query 45256 T 45256 | Sbjct 28034227 T 28034227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451887374180000