Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq210 140 5e-28 seq81 104 3e-17 >seq210 Length=5656762 Score = 140 bits (154), Expect = 5e-28 Identities = 200/282 (71%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953 ||||| || ||||| || || ||||| ||||| || | || || || | ||| | Sbjct 3401943 GGACAGCCTTTCACGTTATTGCAGATGAGAGACTGTATTGAGGCTGTGTTGAGGATTTTA 3401884 Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013 |||||||| || || || || ||||| || |||||||| || || ||||| || Sbjct 3401883 AAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTTAGGAGAACAGATAGGATTA 3401824 Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073 ||||||| ||||||||||| ||||| || || || || | || ||||||| || ||| Sbjct 3401823 CCCATGAGTCCTTTCAAGGAGAACGGTGCTCCTAGTTCTACCATAGTCTCACCAAAAATG 3401764 Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133 ||| | ||||| || ||||| || | | | ||| ||| | || | ||| || | || Sbjct 3401763 GCATCTGGACGAGGCTTTTCAACCAGAAGGGCAGGGTATAACTCCATAGCATCAATATCA 3401704 Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||||| || || || ||||| || || || |||||||| ||| Sbjct 3401703 CCATACAGTGCCTCTAACTCTGCTGCCATTTCCTTCTCTCCT 3401662 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 10116 TTCGCTCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTC 10175 ||| ||||||||||||| || | |||| | |||||||| ||||| || ||| ||| Sbjct 3398794 TTCTCTCTTACCCCATGGCCTAGTCCTTTGGTGAAAGCTGGTCCACGTTTATGATCTGTC 3398735 Query 10176 CTAAAAAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGG 10235 | ||||| || || || ||||| || | || || || ||||||| ||| ||||||||| Sbjct 3398734 TTGAAAAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGG 3398675 Query 10236 GGATCGGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGA 10288 ||||| |||||||| | || | | | || ||| |||||||||| | |||| Sbjct 3398674 GGATCAGGGATAAACTTTCTTCTCAGGAGAAATTTTTCCACAATCTCTTTTGA 3398622 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||| ||||| | |||||| ||||||||| |||| || ||||| || | ||| ||||| Sbjct 3398209 ACCTTTTACCCCCACAGGAGTGGGGCAGTCATGAGGGACAGGAGGAAGGGCTCTGGTATA 3398150 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 |||||| || || ||| | ||||||||||| ||||||||||| | | || || || Sbjct 3398149 ATAGGAGAGGTTAGAATAGGCTTCCCAGCTTTTGTAGCCATAGTGAACATTATAAGTTGG 3398090 Query 10509 GGGACTGTCAATCA 10522 ||||| ||||||| Sbjct 3398089 TGGACTCTCAATCA 3398076 >seq81 Length=13573838 Score = 104 bits (114), Expect = 3e-17 Identities = 171/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || |||| |||||| | || || || || ||||| |||||||||||| Sbjct 526695 GTGGCAGTCTTGACAATGTTGAAACCTGCCTCGCCACCAAATGTGCTTGGTTTCCAGTAC 526754 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| || |||||| ||| | | ||| || || | |||||| |||||||| | || Sbjct 526755 TCCGGAGAACAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCT 526814 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTA 9111 || || ||||| || || |||| ||| | || || | || | || || | || Sbjct 526815 ATCATACTCTCCCCAAAAATGGAGTTTGGAAGGCACTTCTC-AAGAAGCAGCCCTGGATA 526873 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || || | ||| ||||| || ||||||| || || || ||||||||||| Sbjct 526874 GAACTCCATGGCATCAATGTCACCATACAGCTCTTCCAATTCAGCCGCCATCTCCTTCTC 526933 Query 9172 ACCT 9175 ||| Sbjct 526934 TCCT 526937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723542544700000