Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq210 140 5e-28
seq81 104 3e-17
>seq210
Length=5656762
Score = 140 bits (154), Expect = 5e-28
Identities = 200/282 (71%), Gaps = 0/282 (0%)
Strand=Plus/Minus
Query 8894 GGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCT 8953
||||| || ||||| || || ||||| ||||| || | || || || | ||| |
Sbjct 3401943 GGACAGCCTTTCACGTTATTGCAGATGAGAGACTGTATTGAGGCTGTGTTGAGGATTTTA 3401884
Query 8954 AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTC 9013
|||||||| || || || || ||||| || |||||||| || || ||||| ||
Sbjct 3401883 AAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTAGTTAGGAGAACAGATAGGATTA 3401824
Query 9014 GCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATG 9073
||||||| ||||||||||| ||||| || || || || | || ||||||| || |||
Sbjct 3401823 CCCATGAGTCCTTTCAAGGAGAACGGTGCTCCTAGTTCTACCATAGTCTCACCAAAAATG 3401764
Query 9074 GCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCG 9133
||| | ||||| || ||||| || | | | ||| ||| | || | ||| || | ||
Sbjct 3401763 GCATCTGGACGAGGCTTTTCAACCAGAAGGGCAGGGTATAACTCCATAGCATCAATATCA 3401704
Query 9134 CCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
||||| || || || ||||| || || || |||||||| |||
Sbjct 3401703 CCATACAGTGCCTCTAACTCTGCTGCCATTTCCTTCTCTCCT 3401662
Score = 114 bits (126), Expect = 2e-20
Identities = 129/173 (75%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 10116 TTCGCTCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTC 10175
||| ||||||||||||| || | |||| | |||||||| ||||| || ||| |||
Sbjct 3398794 TTCTCTCTTACCCCATGGCCTAGTCCTTTGGTGAAAGCTGGTCCACGTTTATGATCTGTC 3398735
Query 10176 CTAAAAAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGG 10235
| ||||| || || || ||||| || | || || || ||||||| ||| |||||||||
Sbjct 3398734 TTGAAAAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGG 3398675
Query 10236 GGATCGGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGA 10288
||||| |||||||| | || | | | || ||| |||||||||| | ||||
Sbjct 3398674 GGATCAGGGATAAACTTTCTTCTCAGGAGAAATTTTTCCACAATCTCTTTTGA 3398622
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448
|||||| ||||| | |||||| ||||||||| |||| || ||||| || | ||| |||||
Sbjct 3398209 ACCTTTTACCCCCACAGGAGTGGGGCAGTCATGAGGGACAGGAGGAAGGGCTCTGGTATA 3398150
Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508
|||||| || || ||| | ||||||||||| ||||||||||| | | || || ||
Sbjct 3398149 ATAGGAGAGGTTAGAATAGGCTTCCCAGCTTTTGTAGCCATAGTGAACATTATAAGTTGG 3398090
Query 10509 GGGACTGTCAATCA 10522
||||| |||||||
Sbjct 3398089 TGGACTCTCAATCA 3398076
>seq81
Length=13573838
Score = 104 bits (114), Expect = 3e-17
Identities = 171/244 (70%), Gaps = 2/244 (1%)
Strand=Plus/Plus
Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992
|| || || || || |||| |||||| | || || || || ||||| ||||||||||||
Sbjct 526695 GTGGCAGTCTTGACAATGTTGAAACCTGCCTCGCCACCAAATGTGCTTGGTTTCCAGTAC 526754
Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052
|||| || |||||| ||| | | ||| || || | |||||| |||||||| | ||
Sbjct 526755 TCCGGAGAACAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCT 526814
Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAG-CCAGTGTA 9111
|| || ||||| || || |||| ||| | || || | || | || || | ||
Sbjct 526815 ATCATACTCTCCCCAAAAATGGAGTTTGGAAGGCACTTCTC-AAGAAGCAGCCCTGGATA 526873
Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171
|| || | || || | ||| ||||| || ||||||| || || || |||||||||||
Sbjct 526874 GAACTCCATGGCATCAATGTCACCATACAGCTCTTCCAATTCAGCCGCCATCTCCTTCTC 526933
Query 9172 ACCT 9175
|||
Sbjct 526934 TCCT 526937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723542544700000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |