Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq281 107 1e-18
seq143 93.3 3e-14
>seq281
Length=3633602
Score = 107 bits (118), Expect = 1e-18
Identities = 166/234 (71%), Gaps = 5/234 (2%)
Strand=Plus/Plus
Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547
|||| || |||| || ||| || |||| |||| ||| |||||| || || || ||||
Sbjct 126476 CATCCCC-CCTCTCAGACGAAGGACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAAT 126534
Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607
| | || | || |||| |||| ||||||||| |||| || || | |||||| || |
Sbjct 126535 CAGACAGAGTACGGCCATCTTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAG 126594
Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCT 39665
||| | |||||||||||| || ||| || | || | | |||| ||| ||
Sbjct 126595 GGGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGC- 126653
Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || || | ||||| ||||||||||| | |||||| || |||||||||||
Sbjct 126654 -TCAACCTCAAGGGTAATAGTTTTACCCGTGAGAGTTTTCACAAAGATCTGCAT 126706
>seq143
Length=9160510
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || | ||||||||| ||||| |||| || |||||| || || || || || | |
Sbjct 9115223 CCTCCCCTCAAACGCAGGACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGAC 9115164
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| ||| | || |||| |||||||| |||| || || | |||||| || | ||
Sbjct 9115163 AGTGTGCGCTTGTCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGG 9115104
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGT--CTGCGCTTTCCA 39670
| |||||||||||| || ||| ||| | || | | |||| ||| || || |
Sbjct 9115103 ATGCCTTCTTTGTCTTGAATCTTTGCTTTGACATTCTCAATGGTGTCACTGGGC--TCTA 9115046
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| || | ||||| || ||||| || || ||||| ||||||||||||||
Sbjct 9115045 CTTCAAGGGTAATGGTCTTACCAGTCAAGGTTTTCACGAAGATCTGCAT 9114997
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347282811876500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |