Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq92 87.8 1e-12 seq213 86.0 5e-12 >seq92 Length=12275748 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 405 GCTGCCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCA 464 || ||||||||||| || || ||| | || | ||| ||||| ||||| || || || Sbjct 1022297 GCCGCCCACTTCTGGAAGGTCCCACCCCCTGATGGCCTGGTCTCCACAAGCTCCGTGCCC 1022356 Query 465 TCAGTCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCA 524 | || ||| |||| | ||| |||||| || | ||| || || ||||||||||||| Sbjct 1022357 TGGTTCTGTTCCTCTCCATCCACGTGCCAGGTAAGGGTGATTGCCACAGGATAGAAGCCC 1022416 Query 525 GTGGCCCAACATTTTAGTGTTA-CTTGACGGTCAG 558 ||||||||| || ||||| | ||||| |||||| Sbjct 1022417 AGGGCCCAACACTTCAGTGTGACCTTGA-GGTCAG 1022450 >seq213 Length=5512515 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 |||| || | ||||| || || ||| | | || || ||||| || | | |||| Sbjct 872392 CCTCGTGCTGCACATGGCATGTGTATCTCTCTTCCTTTCCAGCAGGAACCACCACAGCTG 872333 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || || ||||| || | ||| ||||| ||||| || | | | | Sbjct 872332 CCCACTTCTGGAAGGTCCCATCCCCTGATGGCCTGGTCTCCACAAGCTCTGTGTCCTGGG 872273 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 || ||| |||| | ||| |||||| || | |||||| | | ||| |||||||| || Sbjct 872272 TCTGTTCCTCTCCATCCAGGTGCCAGGTAAGGGTAATAGCAGAAGGGTAGAAGCCCAGGG 872213 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | ||||| || | |||||||| Sbjct 872212 CCCAGCACCTCAGTGTGACCTCACGGTCAG 872183 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||||| ||| || || ||| | ||||||| | || || | | ||||| Sbjct 5376428 CCTCATGTTGCACACAGCACGTGTATCTCTGCTCTTCTCCAGAGGGAACCACCAAGGCTG 5376487 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || || || ||||| ||||| || ||| | | | Sbjct 5376488 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACGAGCTCCATGTCCTGGG 5376547 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | | ||| | || ||||| || | ||| || ||||| || |||||||| | Sbjct 5376548 ATTGGTTCTCCCCATCCCGCTGCCAGGTCAGGGTGATCTCCGCTGGGTAGAAGCCCAGCG 5376607 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | ||||| |||| |||||||| Sbjct 5376608 CCCAGCACCTCAGTGTGACTTCACGGTCAG 5376637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397647825348000