Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_015049.1
Length=124335
Score E
Sequences producing significant alignments: (Bits) Value
seq92 87.8 1e-12
seq213 86.0 5e-12
>seq92
Length=12275748
Score = 87.8 bits (96), Expect = 1e-12
Identities = 114/155 (74%), Gaps = 2/155 (1%)
Strand=Plus/Plus
Query 405 GCTGCCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCA 464
|| ||||||||||| || || ||| | || | ||| ||||| ||||| || || ||
Sbjct 1022297 GCCGCCCACTTCTGGAAGGTCCCACCCCCTGATGGCCTGGTCTCCACAAGCTCCGTGCCC 1022356
Query 465 TCAGTCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCA 524
| || ||| |||| | ||| |||||| || | ||| || || |||||||||||||
Sbjct 1022357 TGGTTCTGTTCCTCTCCATCCACGTGCCAGGTAAGGGTGATTGCCACAGGATAGAAGCCC 1022416
Query 525 GTGGCCCAACATTTTAGTGTTA-CTTGACGGTCAG 558
||||||||| || ||||| | ||||| ||||||
Sbjct 1022417 AGGGCCCAACACTTCAGTGTGACCTTGA-GGTCAG 1022450
>seq213
Length=5512515
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
|||| || | ||||| || || ||| | | || || ||||| || | | ||||
Sbjct 872392 CCTCGTGCTGCACATGGCATGTGTATCTCTCTTCCTTTCCAGCAGGAACCACCACAGCTG 872333
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || || ||||| || | ||| ||||| ||||| || | | | |
Sbjct 872332 CCCACTTCTGGAAGGTCCCATCCCCTGATGGCCTGGTCTCCACAAGCTCTGTGTCCTGGG 872273
Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528
|| ||| |||| | ||| |||||| || | |||||| | | ||| |||||||| ||
Sbjct 872272 TCTGTTCCTCTCCATCCAGGTGCCAGGTAAGGGTAATAGCAGAAGGGTAGAAGCCCAGGG 872213
Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558
|||| || | ||||| || | ||||||||
Sbjct 872212 CCCAGCACCTCAGTGTGACCTCACGGTCAG 872183
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||||| ||| || || ||| | ||||||| | || || | | |||||
Sbjct 5376428 CCTCATGTTGCACACAGCACGTGTATCTCTGCTCTTCTCCAGAGGGAACCACCAAGGCTG 5376487
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||| || || || ||||| ||||| || ||| | | |
Sbjct 5376488 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCCACGAGCTCCATGTCCTGGG 5376547
Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528
| | ||| | || ||||| || | ||| || ||||| || |||||||| |
Sbjct 5376548 ATTGGTTCTCCCCATCCCGCTGCCAGGTCAGGGTGATCTCCGCTGGGTAGAAGCCCAGCG 5376607
Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558
|||| || | ||||| |||| ||||||||
Sbjct 5376608 CCCAGCACCTCAGTGTGACTTCACGGTCAG 5376637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397647825348000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |