Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq42 96.9 4e-15 seq213 91.5 2e-13 >seq42 Length=21960898 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/192 (71%), Gaps = 12/192 (6%) Strand=Plus/Minus Query 2258 CTGCGAGATCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATG 2317 ||| ||||||||||||| ||| ||||| ||| ||| |||||| || |||| |||| ||| Sbjct 20580717 CTGTGAGATCCATCTGAACTGCTCTGTGGAGTGTCCAAATGACGACGTCTCGTTCACATG 20580658 Query 2318 GGAGGCCTTGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAG 2377 | || |||| || ||||| | || ||||||| | |||||||||||| | Sbjct 20580657 GCAGCCCTTAGGAAAGAC---------TGGTCCAAACCTCATCATCTCCTGGGACCCTGG 20580607 Query 2378 GAACAGCAGTGAGCAGAA---CTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTC 2434 ||| |||||| || || ||||| ||||| || | || |||| |||||| | || Sbjct 20580606 GAATTCCAGTGAACATAATTCTTACACCTGCATAGCTAAGAATCCTGTCAGCAATGTATC 20580547 Query 2435 TTTCACGGTCTC 2446 | | | ||||| Sbjct 20580546 CTCCTCTGTCTC 20580535 >seq213 Length=5512515 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 14528 CCACTTCCTTTTTGTTATTTGTGCGGCCATATCTGTCGCAGTCCAAGACCGTAGATCTTC 14587 |||||| | | || || || |||||| | || | ||||||||| || || || || || Sbjct 5377416 CCACTTGCGCTCGGTGATCTGAGCGGCCGTGTCCGCCGCAGTCCAGGAGCGCAGGTCCTC 5377475 Query 14588 ATTTAGACTGAAATAATCTTTACCGTCGTAAGCGTACTGCTCATAACCACGAATGAAACT 14647 || || || ||||| | |||||||| || ||||| || ||||| | || | Sbjct 5377476 GTTCAGGGCGATGTAATCATGGCCGTCGTAGGCATACTGACTGTACCCACGGAGGAGGCG 5377535 Query 14648 TCCATTTTCCCAGACATCACAGCCATACATTCGCTGAATCGTGTGAGACC 14697 ||||| || | | |||||||||||||||| |||||| |||||||||| Sbjct 5377536 TCCATCCTCTCCCAAGTCACAGCCATACATTCTCTGAATTGTGTGAGACC 5377585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629121946180000