Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq46 105 5e-18
seq16 105 5e-18
seq20 104 2e-17
seq38 100 2e-16
seq172 91.5 1e-13
seq281 89.7 4e-13
seq8 87.8 1e-12
seq87 86.0 5e-12
seq3 82.4 6e-11
>seq46
Length=21197313
Score = 105 bits (116), Expect = 5e-18
Identities = 163/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || | || | |||||| | ||| || ||| ||| |||||||| ||||| ||||
Sbjct 15668202 CGCCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 15668261
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
| || | || | || |||| ||||| || ||||| ||||||| ||| ||||| || |
Sbjct 15668262 ACAGGTTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGTAG 15668321
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
||| | ||||| || ||||| |||||| | | | || || | || |
Sbjct 15668322 GAATTCTTTCCTTATCCTGGATCTTCGCCTTTACATTTTCGATCGTGTCCGAGGTTTCGA 15668381
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|||| | || || ||||||||||| | |||| ||| |||||||||||| ||
Sbjct 15668382 CCTCGAAAGTGATTGTTTTTCCCGTTAGGGTTTGTACGAAAATCTGCATCTTG 15668434
>seq16
Length=33020160
Score = 105 bits (116), Expect = 5e-18
Identities = 163/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || | || | |||||| | ||| || ||| ||| |||||||| ||||| ||||
Sbjct 11074220 CGCCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 11074161
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
| || | || | || |||| |||||||| ||||| ||||||| ||| ||||| | |
Sbjct 11074160 ACAGGGTGCGTCCATCTTCCAGTTGCTTACCAGCAAAAATCAGTCTCTGCTGATCAGGAG 11074101
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
||| || ||||| || ||||| |||||| | | ||||| | || |
Sbjct 11074100 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTTGATTGTATCTGAGGGTTCGA 11074041
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|||| | || ||||| || ||||| | ||||||| |||||||||||| ||
Sbjct 11074040 CCTCGAGAGTGATCGTCTTCCCCGTTAGGTTTTTTACGAAAATCTGCATCTTG 11073988
>seq20
Length=29555478
Score = 104 bits (114), Expect = 2e-17
Identities = 165/234 (71%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || | || | |||||| | ||| || ||| ||| |||||||| ||||| ||||
Sbjct 26628085 CGCCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 26628026
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
| || | || | || |||| |||| || ||||| ||||||| ||| ||||| | |
Sbjct 26628025 ACAGGGTGCGTCCATCTTCCAGTTGCTCGCCAGCAAAAATCAGTCTCTGCTGATCAGGAG 26627966
Query 48658 GAACGCCCTCCTTGTCGCTA-ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCC 48716
||| || ||||| | ||| ||||| |||||| | | | ||||| | ||
Sbjct 26627965 GAATTCCTTCCTTAT-GCTGGATCTTGGCCTTTACATTTTCGATTGTATCTGAGGGTTCG 26627907
Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
||||| | || ||||| || ||||| | |||||||| |||||||||||| ||
Sbjct 26627906 ACCTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTTACGAAAATCTGCATCTTG 26627853
>seq38
Length=23493148
Score = 100 bits (110), Expect = 2e-16
Identities = 162/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || | || | |||||| | ||| || ||| ||| |||||||| ||||| ||||
Sbjct 5890870 CGCCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 5890929
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
| || | || | || |||| ||||| || ||||| ||||||| ||| ||||| | |
Sbjct 5890930 ACAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAG 5890989
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
||| || ||||| || ||||| |||||| | | | || || | | |
Sbjct 5890990 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATCGTATCCGAGGGTTTGA 5891049
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|||| | || ||||| || ||||||| ||||||| |||||||||||| ||
Sbjct 5891050 CCTCGAGAGTGATCGTCTTCCCCGTCAGGGTTTTTAAGAAAATCTGCATCTTG 5891102
>seq172
Length=7263250
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || | || | |||||| | ||| || ||| ||| |||||||||||||| ||||
Sbjct 740226 CGCCACCGCGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAG 740167
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
| || | || | || || | ||||| || ||||| ||||||| ||| ||||| | |
Sbjct 740166 ACAGGGTGCGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAG 740107
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
||| || ||||| || ||||| |||||| | | || || | || |
Sbjct 740106 GAATTCCTTCCTTATCATGGATCTTGGCCTTTACATTTTTTATTGTATCCGAGGGTTCGA 740047
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|||| | || ||||| || || || | |||||||| ||||||| |||| ||
Sbjct 740046 CCTCGAGAGTGATCGTCTTCCCGGTTAGGGTTTTTACGAAAATCTTCATCTTG 739994
>seq281
Length=3633602
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/234 (68%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || || | |||| || || ||| ||||| || || |||||||||||
Sbjct 126480 CCCCCTCTCAGACGAAGGACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 126539
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | || | || |||| || || || ||||| |||| || ||| || || | |||
Sbjct 126540 AGAGTACGGCCATCTTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGG 126599
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||| || ||||| |||||| || ||| | | | || | ||| |||
Sbjct 126600 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 126659
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGT 48773
|| | ||||| ||||| ||||| | |||||| ||||| |||||||| || |||
Sbjct 126660 TCAAGGGTAATAGTTTTACCCGTGAGAGTTTTCACAAAGATCTGCATTGTCTGT 126713
>seq8
Length=38990876
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597
|||| || | || | |||||| | ||| || ||| ||| |||||||| ||||| ||||
Sbjct 3001674 CGCCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 3001615
Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657
| || | || | | |||| ||||| || ||||| |||| || ||| ||||| | |
Sbjct 3001614 ACAGGGTGCGTCCAACTTCCAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAG 3001555
Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717
|| || ||||| || ||||| |||||| | | || || | || |
Sbjct 3001554 AAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTTGATCGTATCCGAGGGTTCGA 3001495
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|||| | || ||| | || ||||| | ||||||||||||||||||||| ||
Sbjct 3001494 CCTCGAGAGTGATCATCTTCCCCGTTAGGGTTTTTACAAAAATCTGCATCTTG 3001442
>seq87
Length=12919766
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
|||||| | ||| || ||| ||| |||||||| ||||| ||||| || | | | |
Sbjct 9400122 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCATCCATT 9400181
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|||| ||||| || ||||| ||||||| ||| ||||| | |||| || ||||| ||
Sbjct 9400182 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 9400241
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
||||| |||||| | | | || || || ||||| | || |||||
Sbjct 9400242 CTGGATCTTGGCCTTTACATTTTCGATTGTATCCGAGCGTTCGACCTCGAGAGTGATCGT 9400301
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|| || || | | ||||||||||||||||||| ||
Sbjct 9400302 CTTCCCTGTTAGGGCTTTTACAAAAATCTGCATCTTG 9400338
>seq3
Length=52730029
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/217 (69%), Gaps = 1/217 (0%)
Strand=Plus/Plus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
|||||| | ||| || || ||| |||||||| ||||| ||||| || | | | ||
Sbjct 39783082 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGTGTCCATC 39783141
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|||| ||||| || ||| | ||||||| ||| ||||| | |||| || ||||| ||
Sbjct 39783142 TTCCAGTTGCTTGCCAGCAGAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 39783201
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
||||| |||||| ||| | || || | || |||| | || |||||
Sbjct 39783202 CTGGATCTTGGCCTTTACATTTTCCATCTA-TCCGAGGGTTCGACCTTGAGAGTGATCGT 39783260
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770
|| ||||| | ||||||| |||||||||||| ||
Sbjct 39783261 CTTCCCCGTTAGCGTTTTTATGAAAATCTGCATCTTG 39783297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380842425121500
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