Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq46 105 5e-18 seq16 105 5e-18 seq20 104 2e-17 seq38 100 2e-16 seq172 91.5 1e-13 seq281 89.7 4e-13 seq8 87.8 1e-12 seq87 86.0 5e-12 seq3 82.4 6e-11 >seq46 Length=21197313 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || | |||||| | ||| || ||| ||| |||||||| ||||| |||| Sbjct 15668202 CGCCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 15668261 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | || | || |||| ||||| || ||||| ||||||| ||| ||||| || | Sbjct 15668262 ACAGGTTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGTAG 15668321 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| | ||||| || ||||| |||||| | | | || || | || | Sbjct 15668322 GAATTCTTTCCTTATCCTGGATCTTCGCCTTTACATTTTCGATCGTGTCCGAGGTTTCGA 15668381 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| | || || ||||||||||| | |||| ||| |||||||||||| || Sbjct 15668382 CCTCGAAAGTGATTGTTTTTCCCGTTAGGGTTTGTACGAAAATCTGCATCTTG 15668434 >seq16 Length=33020160 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || | |||||| | ||| || ||| ||| |||||||| ||||| |||| Sbjct 11074220 CGCCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 11074161 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | || | || |||| |||||||| ||||| ||||||| ||| ||||| | | Sbjct 11074160 ACAGGGTGCGTCCATCTTCCAGTTGCTTACCAGCAAAAATCAGTCTCTGCTGATCAGGAG 11074101 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| || ||||| || ||||| |||||| | | ||||| | || | Sbjct 11074100 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTTGATTGTATCTGAGGGTTCGA 11074041 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| | || ||||| || ||||| | ||||||| |||||||||||| || Sbjct 11074040 CCTCGAGAGTGATCGTCTTCCCCGTTAGGTTTTTTACGAAAATCTGCATCTTG 11073988 >seq20 Length=29555478 Score = 104 bits (114), Expect = 2e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || | |||||| | ||| || ||| ||| |||||||| ||||| |||| Sbjct 26628085 CGCCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 26628026 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | || | || |||| |||| || ||||| ||||||| ||| ||||| | | Sbjct 26628025 ACAGGGTGCGTCCATCTTCCAGTTGCTCGCCAGCAAAAATCAGTCTCTGCTGATCAGGAG 26627966 Query 48658 GAACGCCCTCCTTGTCGCTA-ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCC 48716 ||| || ||||| | ||| ||||| |||||| | | | ||||| | || Sbjct 26627965 GAATTCCTTCCTTAT-GCTGGATCTTGGCCTTTACATTTTCGATTGTATCTGAGGGTTCG 26627907 Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||||| | || ||||| || ||||| | |||||||| |||||||||||| || Sbjct 26627906 ACCTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTTACGAAAATCTGCATCTTG 26627853 >seq38 Length=23493148 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || | |||||| | ||| || ||| ||| |||||||| ||||| |||| Sbjct 5890870 CGCCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 5890929 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | || | || |||| ||||| || ||||| ||||||| ||| ||||| | | Sbjct 5890930 ACAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAG 5890989 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| || ||||| || ||||| |||||| | | | || || | | | Sbjct 5890990 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGATCGTATCCGAGGGTTTGA 5891049 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| | || ||||| || ||||||| ||||||| |||||||||||| || Sbjct 5891050 CCTCGAGAGTGATCGTCTTCCCCGTCAGGGTTTTTAAGAAAATCTGCATCTTG 5891102 >seq172 Length=7263250 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || | |||||| | ||| || ||| ||| |||||||||||||| |||| Sbjct 740226 CGCCACCGCGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAG 740167 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | || | || || | ||||| || ||||| ||||||| ||| ||||| | | Sbjct 740166 ACAGGGTGCGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAG 740107 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| || ||||| || ||||| |||||| | | || || | || | Sbjct 740106 GAATTCCTTCCTTATCATGGATCTTGGCCTTTACATTTTTTATTGTATCCGAGGGTTCGA 740047 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| | || ||||| || || || | |||||||| ||||||| |||| || Sbjct 740046 CCTCGAGAGTGATCGTCTTCCCGGTTAGGGTTTTTACGAAAATCTTCATCTTG 739994 >seq281 Length=3633602 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | |||| || || ||| ||||| || || ||||||||||| Sbjct 126480 CCCCCTCTCAGACGAAGGACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 126539 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || |||| || || || ||||| |||| || ||| || || | ||| Sbjct 126540 AGAGTACGGCCATCTTCCAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGGGGG 126599 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || ||||| |||||| || ||| | | | || | ||| ||| Sbjct 126600 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 126659 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGT 48773 || | ||||| ||||| ||||| | |||||| ||||| |||||||| || ||| Sbjct 126660 TCAAGGGTAATAGTTTTACCCGTGAGAGTTTTCACAAAGATCTGCATTGTCTGT 126713 >seq8 Length=38990876 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || | |||||| | ||| || ||| ||| |||||||| ||||| |||| Sbjct 3001674 CGCCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAG 3001615 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | || | | |||| ||||| || ||||| |||| || ||| ||||| | | Sbjct 3001614 ACAGGGTGCGTCCAACTTCCAGTTGCTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAG 3001555 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 || || ||||| || ||||| |||||| | | || || | || | Sbjct 3001554 AAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTTGATCGTATCCGAGGGTTCGA 3001495 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||| | || ||| | || ||||| | ||||||||||||||||||||| || Sbjct 3001494 CCTCGAGAGTGATCATCTTCCCCGTTAGGGTTTTTACAAAAATCTGCATCTTG 3001442 >seq87 Length=12919766 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || ||| ||| |||||||| ||||| ||||| || | | | | Sbjct 9400122 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCATCCATT 9400181 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| ||| ||||| | |||| || ||||| || Sbjct 9400182 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 9400241 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | | || || || ||||| | || ||||| Sbjct 9400242 CTGGATCTTGGCCTTTACATTTTCGATTGTATCCGAGCGTTCGACCTCGAGAGTGATCGT 9400301 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || | | ||||||||||||||||||| || Sbjct 9400302 CTTCCCTGTTAGGGCTTTTACAAAAATCTGCATCTTG 9400338 >seq3 Length=52730029 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || || ||| |||||||| ||||| ||||| || | | | || Sbjct 39783082 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAGGGTGTGTCCATC 39783141 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||| | ||||||| ||| ||||| | |||| || ||||| || Sbjct 39783142 TTCCAGTTGCTTGCCAGCAGAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 39783201 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| ||| | || || | || |||| | || ||||| Sbjct 39783202 CTGGATCTTGGCCTTTACATTTTCCATCTA-TCCGAGGGTTCGACCTTGAGAGTGATCGT 39783260 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || ||||| | ||||||| |||||||||||| || Sbjct 39783261 CTTCCCCGTTAGCGTTTTTATGAAAATCTGCATCTTG 39783297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380842425121500