Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq268 187 5e-42 seq374 141 2e-28 seq3 109 1e-18 seq48 98.7 2e-15 seq4595 93.3 8e-14 seq205 91.5 3e-13 seq140 91.5 3e-13 seq260 84.2 4e-11 >seq268 Length=3785341 Score = 187 bits (206), Expect = 5e-42 Identities = 187/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 429658 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 429599 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || || || ||||| |||||||| || | |||||| |||||| Sbjct 429598 TCCCGGAGGAGGCCGGCCGTGTTCGACAGCCCTGCGTTCTCCGCCTTGAGTGTCTTCACC 429539 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 429538 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 429479 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 || ||||| || | ||| || ||| | |||||||| ||||| || ||||||| ||| ||| Sbjct 429478 CGATTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGATCTTCCATGTTGATGGGA 429419 Query 241625 GAC 241627 ||| Sbjct 429418 GAC 429416 >seq374 Length=2175744 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || |||| || | || ||| | ||| Sbjct 1161531 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAAAAGGTTGGCCGTAGACGCCAGC 1161590 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| |||||||| || |||| |||||| ||||| Sbjct 1161591 TCCGTGTTCTGGCTCTTGAGGGTCTTCACCTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 1161650 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| ||||| |||| ||| || | |||||| || || | ||| |||||||||||| Sbjct 1161651 TTGCGCTTACGGCACTTGGAGGCGGCAATGCGGTTGCGCAGCCGCTTGCGTTCCGCCTTG 1161710 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||||||||| || ||| Sbjct 1161711 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 1161743 >seq3 Length=52730029 Score = 109 bits (120), Expect = 1e-18 Identities = 345/531 (65%), Gaps = 9/531 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || || ||||| |||||| ||||||| |||| ||| |||| || | ||||| Sbjct 13968577 CTGATATTCGCCTACTCTTTTCTCACAGAAGTTAGTCTGCCCTTCCAGTGAATTATTCTC 13968636 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCA- 47957 ||||||| || || || | || ||| | | | |||| ||||||||| Sbjct 13968637 CATGAAGTCAAATGGATTTTCTACTTTGAACATCTTATTAAAACCCA---GTTCCAGCAT 13968693 Query 47958 -GGTGA-TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 ||| || || || | || ||||| ||| | ||| ||||| || || | Sbjct 13968694 TGGTCTGTCTGCCACAAATTCAATGTACCACTTCATTAAAGTGCAATTCATTCCGATAAA 13968753 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 ||| ||||| |||| || |||||||||| |||| | || || | | || Sbjct 13968754 TTTCACAGGCAAGGCCTCAGTAAGAAACTCCTATTCTAGCCTAACAGCATTAATAATTAT 13968813 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | || || | ||| || ||||||| ||||||| ||| | | | |||||| Sbjct 13968814 TTCTTTTACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGA---ACATTAGGCAGGC 13968870 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| | |||||| || || || | ||| || || | ||||| || |||||||| Sbjct 13968871 AAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGGTCATTGGAAAATGTCAGACCAGG 13968930 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| || | || ||||||||||| |||| || || || ||||| ||||||| | Sbjct 13968931 CATTGGTCCTCACTTATTGAGCCAGAATATTGATGCAAATGAACCAGAATAGAAGATTCT 13968990 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 |||||||| || || || | | || || | | ||| | ||||| |||| Sbjct 13968991 TTCCACTGCTGCAAAGGCTCCAACACGATCCCCATATGTAGCTTCTTTGTCCCCAGTCCA 13969050 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 | | ||||| ||||| ||| |||| | || |||||| | || ||||| Sbjct 13969051 GCCCAAGGCCCAATCTGCTTTCCTCTTCACACAAGGCATCCTTTCAATGGC 13969101 >seq48 Length=20441919 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||||||||| | |||| ||| | |||||||| | ||| Sbjct 19562470 TTCACTTTTTCCTCCAGCCGCGCGATCCTCTCCAATTTCCTTTTCCGGCATTTAGAGGCA 19562411 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| |||||||| |||||||||| Sbjct 19562410 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGTTCCTGTGACTCCATGTCG 19562351 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 19562350 ATGGGGGAC 19562342 >seq4595 Length=7281 Score = 93.3 bits (102), Expect = 8e-14 Identities = 186/271 (69%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 48098 GGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCG 48157 ||||||| ||||||| ||| | | | ||| |||| ||| | |||||| || || Sbjct 6637 GGTTTGTGTAGCAGGTGTTTGA---ACACTAGGCAAGCAATGTCACAGTGCAAACCCTCA 6581 Query 48158 TCCCGGCTGATGAGCACGTT-GGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAG 48216 | | ||| || || | || ||| || ||||||||||| | | | | ||||| Sbjct 6580 CCTCTGCTAATAAGTTCATTTGGAAAATGTCAGACCAGGCATAAGTTCTCATTTCTTGAG 6521 Query 48217 CCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGT 48276 |||||| |||| || ||||| ||||| |||||||| || |||||||| || || || Sbjct 6520 CCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTAC 6461 Query 48277 GAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG-GAAAGCGCCCAGTCTGCCT 48335 | | ||| || | | | | |||||| |||||| | ||| |||| ||||||| Sbjct 6460 AACACACTCCCCATAGGTAATTTCTTTGTCTCCAATCCAGCGCAAG-ACCCAATCTGCCT 6402 Query 48336 TCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||||||| | || |||||| | || ||||| Sbjct 6401 TCTTCTTCACACAAGGCATCATTTCAATGGC 6371 >seq205 Length=6054944 Score = 91.5 bits (100), Expect = 3e-13 Identities = 341/530 (64%), Gaps = 16/530 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||| || || | ||||| |||||| ||||||| |||| || |||| || || ||||| Sbjct 2460990 CTGATATTCACTTACTCTCTTCTCAGAGAAGTTACTCTTTCCTTCCAGTGAAATATTCTC 2461049 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| || || | | || |||||| | | |||| |||||| || Sbjct 2461050 CATGAAGTCAAATGGACTTTCTACTTTGAACACCCTGTTAAAACCCA---GTTCCATCAT 2461106 Query 47959 GTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015 | || || | | || ||||| | ||| | ||| ||||| || || || Sbjct 2461107 TAGTCTGTCTGCCTTGAATTCAATGTACTACTGCATTAAAGTGCAATTCATTCCGATAAG 2461166 Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075 ||| ||||| |||| || || ||||||| |||||| || || | | || Sbjct 2461167 CTTCACAGGCAAGGCCTCAGTAAGTAACTCCTGTTCTATCCTAACAGCATTAATAATTAT 2461226 Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | || || | |||| | ||||| | | ||||| ||| || |||||| Sbjct 2461227 TTCTTTTACTCTCTGCTCTTAAGGTTTTTGTAGAAGGTGTTTGAACGTTAG---GCAGGC 2461283 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| | |||||| || || || | ||||| || | ||||| || |||||||| Sbjct 2461284 AAAGTCACAGTGCAAACCCTCATCTCTGCTGAGAAGTTCATTGGAAAATGTCAGACCAGG 2461343 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 | | | || ||||||||||| |||| | ||||| |||| ||||||| || Sbjct 2461344 CTT-----CTTGCTTCTTGAGCCAGAACATTGATACAAAAGAATCAGAAAAGAAGACTCC 2461398 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC- 48314 ||||||| || || || | |||||| | | ||| | ||||| |||| Sbjct 2461399 TTCCACTGTTGCAAAGGCTACAACATGCTCTCCATAGGTAGCTTCTTTGTCCCCAATCCA 2461458 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATG 48364 | | ||| ||||| |||||||||||||| || || || ||||| || ||| Sbjct 2461459 ATGCAAG-GCCCAATCTGCCTTCTTCTTCATACAAGGTATCGTTTCAATG 2461507 >seq140 Length=9235476 Score = 91.5 bits (100), Expect = 3e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || |||||||||||||||||| ||| || ||||||||||| ||| Sbjct 5949795 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGG 5949854 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 5949855 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 5949913 Query 213647 GGAC 213650 ||| Sbjct 5949914 AGAC 5949917 >seq260 Length=4071714 Score = 84.2 bits (92), Expect = 4e-11 Identities = 166/240 (69%), Gaps = 7/240 (3%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 |||||| || | | |||||| || || || | ||| || || | |||| || ||| Sbjct 1909763 CAGGCATAGCCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGGAAATGTCAGA 1909704 Query 48191 CCAGGCATGACCCCCCTCTGTTT-GAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 |||||||| | || | || ||| ||||||| | |||| || ||||| | ||| ||||| Sbjct 1909703 CCAGGCATTAGTCCTCGCTTTTTTGAGCCAGGATATTGATGCAAAAGAACTAGAAAAGAA 1909644 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGA--AGCGTTCTTGTCT 48307 || || |||| ||| || || || | | | ||||| | | ||| | ||||| Sbjct 1909643 AATTCCTTCCATTGCTGCAAAGGCTACAA--CACGCTCCGCATGGGTAGCTTCTTTGTCC 1909586 Query 48308 GAGATCCAG-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||||| | ||| ||||| |||||||||||||| | || |||| ||| | ||||| Sbjct 1909585 CCAATCCAGCGCAAG-GCCCAATCTGCCTTCTTCTTAACACAAGGCAGCGTTCCAATGGC 1909527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931294094720000