Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq268 187 5e-42
seq374 141 2e-28
seq3 109 1e-18
seq48 98.7 2e-15
seq4595 93.3 8e-14
seq205 91.5 3e-13
seq140 91.5 3e-13
seq260 84.2 4e-11
>seq268
Length=3785341
Score = 187 bits (206), Expect = 5e-42
Identities = 187/243 (77%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444
||| |||| ||||| | || | ||| || ||||| ||||||||| |||||||||||
Sbjct 429658 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 429599
Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504
||||| || | | || || || ||||| |||||||| || | |||||| ||||||
Sbjct 429598 TCCCGGAGGAGGCCGGCCGTGTTCGACAGCCCTGCGTTCTCCGCCTTGAGTGTCTTCACC 429539
Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564
|| |||||||| ||||||||||| ||||| || ||| ||||| |||||||| ||||
Sbjct 429538 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 429479
Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624
|| ||||| || | ||| || ||| | |||||||| ||||| || ||||||| ||| |||
Sbjct 429478 CGATTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGATCTTCCATGTTGATGGGA 429419
Query 241625 GAC 241627
|||
Sbjct 429418 GAC 429416
>seq374
Length=2175744
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
||||||| ||| ||||| || |||||||| || |||| || | || ||| | |||
Sbjct 1161531 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAAAAGGTTGGCCGTAGACGCCAGC 1161590
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | |||||| |||||| |||||||| || |||| |||||| |||||
Sbjct 1161591 TCCGTGTTCTGGCTCTTGAGGGTCTTCACCTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 1161650
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
|||||| ||||| |||| ||| || | |||||| || || | ||| ||||||||||||
Sbjct 1161651 TTGCGCTTACGGCACTTGGAGGCGGCAATGCGGTTGCGCAGCCGCTTGCGTTCCGCCTTG 1161710
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||| ||||| ||||||||||| || |||
Sbjct 1161711 ATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 1161743
>seq3
Length=52730029
Score = 109 bits (120), Expect = 1e-18
Identities = 345/531 (65%), Gaps = 9/531 (2%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||| || || || ||||| |||||| ||||||| |||| ||| |||| || | |||||
Sbjct 13968577 CTGATATTCGCCTACTCTTTTCTCACAGAAGTTAGTCTGCCCTTCCAGTGAATTATTCTC 13968636
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCA- 47957
||||||| || || || | || ||| | | | |||| |||||||||
Sbjct 13968637 CATGAAGTCAAATGGATTTTCTACTTTGAACATCTTATTAAAACCCA---GTTCCAGCAT 13968693
Query 47958 -GGTGA-TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015
||| || || || | || ||||| ||| | ||| ||||| || || |
Sbjct 13968694 TGGTCTGTCTGCCACAAATTCAATGTACCACTTCATTAAAGTGCAATTCATTCCGATAAA 13968753
Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075
||| ||||| |||| || |||||||||| |||| | || || | | ||
Sbjct 13968754 TTTCACAGGCAAGGCCTCAGTAAGAAACTCCTATTCTAGCCTAACAGCATTAATAATTAT 13968813
Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135
| || || | ||| || ||||||| ||||||| ||| | | | ||||||
Sbjct 13968814 TTCTTTTACTCTCTGCTCCGAAGGTTTGTGTAGCAGGTGTTTGA---ACATTAGGCAGGC 13968870
Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195
|||||| | |||||| || || || | ||| || || | ||||| || ||||||||
Sbjct 13968871 AAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGGTCATTGGAAAATGTCAGACCAGG 13968930
Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255
||| || | || ||||||||||| |||| || || || ||||| ||||||| |
Sbjct 13968931 CATTGGTCCTCACTTATTGAGCCAGAATATTGATGCAAATGAACCAGAATAGAAGATTCT 13968990
Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315
|||||||| || || || | | || || | | ||| | ||||| ||||
Sbjct 13968991 TTCCACTGCTGCAAAGGCTCCAACACGATCCCCATATGTAGCTTCTTTGTCCCCAGTCCA 13969050
Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366
| | ||||| ||||| ||| |||| | || |||||| | || |||||
Sbjct 13969051 GCCCAAGGCCCAATCTGCTTTCCTCTTCACACAAGGCATCCTTTCAATGGC 13969101
>seq48
Length=20441919
Score = 98.7 bits (108), Expect = 2e-15
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||||||||| | |||| ||| | |||||||| | |||
Sbjct 19562470 TTCACTTTTTCCTCCAGCCGCGCGATCCTCTCCAATTTCCTTTTCCGGCATTTAGAGGCA 19562411
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | ||||||||||| |||||||| ||||||||||
Sbjct 19562410 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGTTCCTGTGACTCCATGTCG 19562351
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 19562350 ATGGGGGAC 19562342
>seq4595
Length=7281
Score = 93.3 bits (102), Expect = 8e-14
Identities = 186/271 (69%), Gaps = 6/271 (2%)
Strand=Plus/Minus
Query 48098 GGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCG 48157
||||||| ||||||| ||| | | | ||| |||| ||| | |||||| || ||
Sbjct 6637 GGTTTGTGTAGCAGGTGTTTGA---ACACTAGGCAAGCAATGTCACAGTGCAAACCCTCA 6581
Query 48158 TCCCGGCTGATGAGCACGTT-GGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAG 48216
| | ||| || || | || ||| || ||||||||||| | | | | |||||
Sbjct 6580 CCTCTGCTAATAAGTTCATTTGGAAAATGTCAGACCAGGCATAAGTTCTCATTTCTTGAG 6521
Query 48217 CCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGT 48276
|||||| |||| || ||||| ||||| |||||||| || |||||||| || || ||
Sbjct 6520 CCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCTAC 6461
Query 48277 GAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG-GAAAGCGCCCAGTCTGCCT 48335
| | ||| || | | | | |||||| |||||| | ||| |||| |||||||
Sbjct 6460 AACACACTCCCCATAGGTAATTTCTTTGTCTCCAATCCAGCGCAAG-ACCCAATCTGCCT 6402
Query 48336 TCTTCTTGATGCATGGCATCGTCTCTATGGC 48366
||||||| | || |||||| | || |||||
Sbjct 6401 TCTTCTTCACACAAGGCATCATTTCAATGGC 6371
>seq205
Length=6054944
Score = 91.5 bits (100), Expect = 3e-13
Identities = 341/530 (64%), Gaps = 16/530 (3%)
Strand=Plus/Plus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||| || || | ||||| |||||| ||||||| |||| || |||| || || |||||
Sbjct 2460990 CTGATATTCACTTACTCTCTTCTCAGAGAAGTTACTCTTTCCTTCCAGTGAAATATTCTC 2461049
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958
||||||| || || | | || |||||| | | |||| |||||| ||
Sbjct 2461050 CATGAAGTCAAATGGACTTTCTACTTTGAACACCCTGTTAAAACCCA---GTTCCATCAT 2461106
Query 47959 GTGA---TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAG 48015
| || || | | || ||||| | ||| | ||| ||||| || || ||
Sbjct 2461107 TAGTCTGTCTGCCTTGAATTCAATGTACTACTGCATTAAAGTGCAATTCATTCCGATAAG 2461166
Query 48016 GGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAAT 48075
||| ||||| |||| || || ||||||| |||||| || || | | ||
Sbjct 2461167 CTTCACAGGCAAGGCCTCAGTAAGTAACTCCTGTTCTATCCTAACAGCATTAATAATTAT 2461226
Query 48076 CTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135
| || || | |||| | ||||| | | ||||| ||| || ||||||
Sbjct 2461227 TTCTTTTACTCTCTGCTCTTAAGGTTTTTGTAGAAGGTGTTTGAACGTTAG---GCAGGC 2461283
Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195
|||||| | |||||| || || || | ||||| || | ||||| || ||||||||
Sbjct 2461284 AAAGTCACAGTGCAAACCCTCATCTCTGCTGAGAAGTTCATTGGAAAATGTCAGACCAGG 2461343
Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255
| | | || ||||||||||| |||| | ||||| |||| ||||||| ||
Sbjct 2461344 CTT-----CTTGCTTCTTGAGCCAGAACATTGATACAAAAGAATCAGAAAAGAAGACTCC 2461398
Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC- 48314
||||||| || || || | |||||| | | ||| | ||||| ||||
Sbjct 2461399 TTCCACTGTTGCAAAGGCTACAACATGCTCTCCATAGGTAGCTTCTTTGTCCCCAATCCA 2461458
Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATG 48364
| | ||| ||||| |||||||||||||| || || || ||||| || |||
Sbjct 2461459 ATGCAAG-GCCCAATCTGCCTTCTTCTTCATACAAGGTATCGTTTCAATG 2461507
>seq140
Length=9235476
Score = 91.5 bits (100), Expect = 3e-13
Identities = 96/124 (77%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|| ||||| | || || |||||||||||||||||| ||| || ||||||||||| |||
Sbjct 5949795 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGG 5949854
Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646
||| || || | || ||||| |||||||||||||| |||| || |||||| |||
Sbjct 5949855 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 5949913
Query 213647 GGAC 213650
|||
Sbjct 5949914 AGAC 5949917
>seq260
Length=4071714
Score = 84.2 bits (92), Expect = 4e-11
Identities = 166/240 (69%), Gaps = 7/240 (3%)
Strand=Plus/Minus
Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190
|||||| || | | |||||| || || || | ||| || || | |||| || |||
Sbjct 1909763 CAGGCATAGCCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGGAAATGTCAGA 1909704
Query 48191 CCAGGCATGACCCCCCTCTGTTT-GAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249
|||||||| | || | || ||| ||||||| | |||| || ||||| | ||| |||||
Sbjct 1909703 CCAGGCATTAGTCCTCGCTTTTTTGAGCCAGGATATTGATGCAAAAGAACTAGAAAAGAA 1909644
Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGA--AGCGTTCTTGTCT 48307
|| || |||| ||| || || || | | | ||||| | | ||| | |||||
Sbjct 1909643 AATTCCTTCCATTGCTGCAAAGGCTACAA--CACGCTCCGCATGGGTAGCTTCTTTGTCC 1909586
Query 48308 GAGATCCAG-GAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366
|||||| | ||| ||||| |||||||||||||| | || |||| ||| | |||||
Sbjct 1909585 CCAATCCAGCGCAAG-GCCCAATCTGCCTTCTTCTTAACACAAGGCAGCGTTCCAATGGC 1909527
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931294094720000
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