Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 111 3e-19 seq205 98.7 2e-15 seq1 96.9 6e-15 seq4595 86.0 1e-11 >seq3 Length=52730029 Score = 111 bits (122), Expect = 3e-19 Identities = 266/394 (68%), Gaps = 15/394 (4%) Strand=Plus/Minus Query 25678 GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTAT 25737 || ||| | |||||||| || ||||| || ||||| ||||| | || ||||| ||||| Sbjct 13969216 GAAGCCCACTGTTTCTATGGCTTCCAAATCGCCATGGAAAACATACATTCTGAAATGTAT 13969157 Query 25738 GCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGT 25794 | || || || || ||||||| || | | || || || || ||| | Sbjct 13969156 ---AGTCTCCTTATTGACACTTACATTAAAGTCTAAG--GACAGGGAATTTCTCTTTAAT 13969102 Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854 ||||| || || || | | |||||||| || |||||| || |||| | Sbjct 13969101 GCCATTGAAAGGATGCCTTGTGTGAAGAGGAAAGCAGATTGGGCCTTGGGCTGGA-CTGG 13969043 Query 25855 AGCCAGAGC-GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTT 25913 | || || ||||| | ||| || || | | ||||||||| || ||||| | ||||| Sbjct 13969042 GGACAAAGAAGCTACATATGGGGATCGTGTTGGAGCCTTTGCAGCAGTGGAAAGAATCTT 13968983 Query 25914 TTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCA-TGCCCGGGC 25972 | ||||| ||||| | || ||||||||||| || | |||||| |||| || | Sbjct 13968982 CTATTCTGGTTCATTTGCATCAATATTCTGGCTCAATAAGT-GAGGACCAATGCCTGGTC 13968924 Query 25973 TGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCC 26032 || |||||||| || || || ||||| || |||||| | ||| | || |||||||||| Sbjct 13968923 TGACATTTTCCAATGACCTTATTAGCAGAGATGAGGGTTTGCACTGTGACTTTGCCTGCC 13968864 Query 26033 TGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066 | | | || ||| |||| ||||||||||| Sbjct 13968863 TAATGTTCA---AACACCTGCTACACAAACCTTC 13968833 >seq205 Length=6054944 Score = 98.7 bits (108), Expect = 2e-15 Identities = 287/436 (66%), Gaps = 17/436 (4%) Strand=Plus/Minus Query 25604 CATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGG 25663 ||||||||||||| |||||| |||||||| || || || ||| ||| | | Sbjct 2461700 CATTCTTTGCAGCAAGTGATGGCATAGTGAATGAAAACTTGGTGGAGCAATTTAGCCAAA 2461641 Query 25664 AAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGT 25721 |||| ||| ||| || | | |||||||| || ||||| || ||||| |||| | Sbjct 2461640 AAGTTCAGATTACA--GAAGTCTGCTGTTTCTATGGATTCCAAATTGCCATGGAAAGCAT 2461583 Query 25722 GCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGAGAG 25778 ||| ||||| ||||| | || || || || |||| || ||| || || Sbjct 2461582 GCATTCTGAAATGTAT---AGTCTCCTTATTGGCACTTACACTAAAGATCCTAAGGAAAG 2461526 Query 25779 AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGC 25838 || | ||| || ||| || ||||| | || |||| |||||| ||||| Sbjct 2461525 GGAATTTTTCTTTAATGTCATTGAAACGATACCTTGTATGAAGAAGAAGGCAGATTGGGC 2461466 Query 25839 CATGAAGTGGATCAACAGCCAGAGC-GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTG 25897 | || | ||||| | || || ||||| | ||| |||| | ||||||||||| Sbjct 2461465 CTTGCATTGGATTGGG-GACAAAGAAGCTACCTATGGAGAGCATGTTGTAGCCTTTGCAA 2461407 Query 25898 CTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGG 25957 | ||||| || |||| || | ||| |||| | || |||||||||||| || | | Sbjct 2461406 CAGTGGAAGGAGTCTTCTTTTCTGATTCTTTTGTATCAATGTTCTGGCTCAAGAAGCAAG 2461347 Query 25958 GGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACA 26017 | ||| || ||| |||||||| || || ||||||| || |||||| | ||| Sbjct 2461346 -----AAGCCTGGTCTGACATTTTCCAATGAACTTCTCAGCAGAGATGAGGGTTTGCACT 2461292 Query 26018 GAGATTTTGCCTGCCT 26033 | || ||||||||||| Sbjct 2461291 GTGACTTTGCCTGCCT 2461276 >seq1 Length=63721086 Score = 96.9 bits (106), Expect = 6e-15 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 || ||||||||||||||||||| || || || || ||| || || ||||| || || | Sbjct 1747133 GGGTGGTAGCCTTTGCTGCTGTAGAAGGGATTTTCTTCTCTGGATCTTTTGCTGCTATAT 1747074 Query 25940 TCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTT-CCAACGAGCTCATCAGC 25998 ||||||| ||| ||| || ||||| || || ||||||| ||||||| ||||||||| Sbjct 1747073 TCTGGCTAAAGAAGAGAGGTCTTATGCCGGGACT-TACTTTTTCCAACGAACTCATCAGC 1747015 Query 25999 AGGGACGAGG 26008 || || |||| Sbjct 1747014 AGAGATGAGG 1747005 >seq4595 Length=7281 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/202 (71%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 25866 TACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTC 25925 ||| | ||| ||| | | ||||||||||| || ||||| || ||||| || ||||| Sbjct 6442 TACCTATGGGGAGTGTGTTGTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGTTC 6501 Query 25926 GTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCC- 25983 ||||| | || |||||||||||| | | | | || ||||| || ||| |||||| Sbjct 6502 TTTTGCATCAATATTCTGGCTCAAG-AAATGAGAACTTATGCCTGGTCTGACATTTTCCA 6560 Query 25984 AACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 || || || || ||||| | |||||| | ||| | || |||| ||||| | | || Sbjct 6561 AATGAACTTATTAGCAGAGGTGAGGGTTTGCACTGTGACATTGCTTGCCTAGTGTTCA-- 6618 Query 26044 GGCCACTTGCTCCACAAACCTT 26065 ||| |||| |||||||||| Sbjct 6619 -AACACCTGCTACACAAACCTT 6639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928606783520000