Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq3 111 3e-19
seq205 98.7 2e-15
seq1 96.9 6e-15
seq4595 86.0 1e-11
>seq3
Length=52730029
Score = 111 bits (122), Expect = 3e-19
Identities = 266/394 (68%), Gaps = 15/394 (4%)
Strand=Plus/Minus
Query 25678 GAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTAT 25737
|| ||| | |||||||| || ||||| || ||||| ||||| | || ||||| |||||
Sbjct 13969216 GAAGCCCACTGTTTCTATGGCTTCCAAATCGCCATGGAAAACATACATTCTGAAATGTAT 13969157
Query 25738 GCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGAGAGAGATCGGCTGTTTGGT 25794
| || || || || ||||||| || | | || || || || ||| |
Sbjct 13969156 ---AGTCTCCTTATTGACACTTACATTAAAGTCTAAG--GACAGGGAATTTCTCTTTAAT 13969102
Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854
||||| || || || | | |||||||| || |||||| || |||| |
Sbjct 13969101 GCCATTGAAAGGATGCCTTGTGTGAAGAGGAAAGCAGATTGGGCCTTGGGCTGGA-CTGG 13969043
Query 25855 AGCCAGAGC-GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTT 25913
| || || ||||| | ||| || || | | ||||||||| || ||||| | |||||
Sbjct 13969042 GGACAAAGAAGCTACATATGGGGATCGTGTTGGAGCCTTTGCAGCAGTGGAAAGAATCTT 13968983
Query 25914 TTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCA-TGCCCGGGC 25972
| ||||| ||||| | || ||||||||||| || | |||||| |||| || |
Sbjct 13968982 CTATTCTGGTTCATTTGCATCAATATTCTGGCTCAATAAGT-GAGGACCAATGCCTGGTC 13968924
Query 25973 TGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCC 26032
|| |||||||| || || || ||||| || |||||| | ||| | || ||||||||||
Sbjct 13968923 TGACATTTTCCAATGACCTTATTAGCAGAGATGAGGGTTTGCACTGTGACTTTGCCTGCC 13968864
Query 26033 TGCTCTACACGGGCCACTTGCTCCACAAACCTTC 26066
| | | || ||| |||| |||||||||||
Sbjct 13968863 TAATGTTCA---AACACCTGCTACACAAACCTTC 13968833
>seq205
Length=6054944
Score = 98.7 bits (108), Expect = 2e-15
Identities = 287/436 (66%), Gaps = 17/436 (4%)
Strand=Plus/Minus
Query 25604 CATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGG 25663
||||||||||||| |||||| |||||||| || || || ||| ||| | |
Sbjct 2461700 CATTCTTTGCAGCAAGTGATGGCATAGTGAATGAAAACTTGGTGGAGCAATTTAGCCAAA 2461641
Query 25664 AAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGT 25721
|||| ||| ||| || | | |||||||| || ||||| || ||||| |||| |
Sbjct 2461640 AAGTTCAGATTACA--GAAGTCTGCTGTTTCTATGGATTCCAAATTGCCATGGAAAGCAT 2461583
Query 25722 GCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGAGAG 25778
||| ||||| ||||| | || || || || |||| || ||| || ||
Sbjct 2461582 GCATTCTGAAATGTAT---AGTCTCCTTATTGGCACTTACACTAAAGATCCTAAGGAAAG 2461526
Query 25779 AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGC 25838
|| | ||| || ||| || ||||| | || |||| |||||| |||||
Sbjct 2461525 GGAATTTTTCTTTAATGTCATTGAAACGATACCTTGTATGAAGAAGAAGGCAGATTGGGC 2461466
Query 25839 CATGAAGTGGATCAACAGCCAGAGC-GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTG 25897
| || | ||||| | || || ||||| | ||| |||| | |||||||||||
Sbjct 2461465 CTTGCATTGGATTGGG-GACAAAGAAGCTACCTATGGAGAGCATGTTGTAGCCTTTGCAA 2461407
Query 25898 CTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGG 25957
| ||||| || |||| || | ||| |||| | || |||||||||||| || | |
Sbjct 2461406 CAGTGGAAGGAGTCTTCTTTTCTGATTCTTTTGTATCAATGTTCTGGCTCAAGAAGCAAG 2461347
Query 25958 GGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACA 26017
| ||| || ||| |||||||| || || ||||||| || |||||| | |||
Sbjct 2461346 -----AAGCCTGGTCTGACATTTTCCAATGAACTTCTCAGCAGAGATGAGGGTTTGCACT 2461292
Query 26018 GAGATTTTGCCTGCCT 26033
| || |||||||||||
Sbjct 2461291 GTGACTTTGCCTGCCT 2461276
>seq1
Length=63721086
Score = 96.9 bits (106), Expect = 6e-15
Identities = 101/130 (78%), Gaps = 2/130 (2%)
Strand=Plus/Minus
Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939
|| ||||||||||||||||||| || || || || ||| || || ||||| || || |
Sbjct 1747133 GGGTGGTAGCCTTTGCTGCTGTAGAAGGGATTTTCTTCTCTGGATCTTTTGCTGCTATAT 1747074
Query 25940 TCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTT-CCAACGAGCTCATCAGC 25998
||||||| ||| ||| || ||||| || || ||||||| ||||||| |||||||||
Sbjct 1747073 TCTGGCTAAAGAAGAGAGGTCTTATGCCGGGACT-TACTTTTTCCAACGAACTCATCAGC 1747015
Query 25999 AGGGACGAGG 26008
|| || ||||
Sbjct 1747014 AGAGATGAGG 1747005
>seq4595
Length=7281
Score = 86.0 bits (94), Expect = 1e-11
Identities = 143/202 (71%), Gaps = 6/202 (3%)
Strand=Plus/Plus
Query 25866 TACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTC 25925
||| | ||| ||| | | ||||||||||| || ||||| || ||||| || |||||
Sbjct 6442 TACCTATGGGGAGTGTGTTGTAGCCTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGTTC 6501
Query 25926 GTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCC- 25983
||||| | || |||||||||||| | | | | || ||||| || ||| ||||||
Sbjct 6502 TTTTGCATCAATATTCTGGCTCAAG-AAATGAGAACTTATGCCTGGTCTGACATTTTCCA 6560
Query 25984 AACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043
|| || || || ||||| | |||||| | ||| | || |||| ||||| | | ||
Sbjct 6561 AATGAACTTATTAGCAGAGGTGAGGGTTTGCACTGTGACATTGCTTGCCTAGTGTTCA-- 6618
Query 26044 GGCCACTTGCTCCACAAACCTT 26065
||| |||| ||||||||||
Sbjct 6619 -AACACCTGCTACACAAACCTT 6639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928606783520000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |