Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq281 100 2e-16 seq12 84.2 2e-11 >seq281 Length=3633602 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| ||||| | ||||||||||| |||||| || || || Sbjct 126707 AATGCAGATCTTTGTGAAAACTCTCACGGGTAAAACTATTACCCTTGAGGTTGAGCCCAG 126648 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || ||||| ||| ||| |||||||| || | ||| || || Sbjct 126647 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCTGACCA 126588 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| | |||||||| || |||||| |||||||| ||| || | ||||| || Sbjct 126587 GCAGAGATTGATCTTTGCTGGGAAACAACTGGAAGATGGCCGTACTCTGTCTGATTACAA 126528 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| || |||||||| || |||||| |||| Sbjct 126527 CATCCAGAAAGAATCCACCCTGCACCTGGT 126498 >seq12 Length=37268909 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||| || | || || || |||||| | |||||||| || |||||| ||||| Sbjct 28034236 GACAAAGAAGGCATCCCTCCTGACCAGCAGAGATTGATCTTTGCTGGGAAACAACTGGAA 28034295 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| | || || | ||||||||||| |||||||||||||| ||||| |||| Sbjct 28034296 GATGGGCACACACTGTCTGATTATAACATCCAAAAAGAATCTACGCTGCAATTGGT 28034351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425298515269500