Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq14 340 2e-88 seq61 190 2e-43 seq5 147 3e-30 seq84 98.7 1e-15 >seq14 Length=34905451 Score = 340 bits (376), Expect = 2e-88 Identities = 670/985 (68%), Gaps = 11/985 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 ||||||||| |||| |||||| | ||| || | ||||||||| ||| || || || || Sbjct 23451836 CAGATGTTCATCCAAACATTGAATGGCAAAGAAATCAACGTCTGTGTCAAACTTGTTGGC 23451777 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || ||| ||||||| || || || | ||| || ||||| || Sbjct 23451776 AAACAAGTGGTGT---TTGCGTAACATCCAGTTCAAATCCCCTGCCCCAAAAACGCACAC 23451720 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | || | ||| |||| || ||||| | || || || | || || ||||| Sbjct 23451719 GGAGCGCACATGGATGCCACTGCAGGGTGGGTAGGGGGCGCCCTTGGAAACATCGCCTTC 23451660 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||| ||||| || |||||||| || | ||| |||||||| || ||||||||||| | Sbjct 23451659 AAAGTAGTGCCATTTGACAAACCTTGCAAACGCGTGCATGTCAGATGTGTCGTATTTATC 23451600 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | || | || || || ||| | || || | || | ||||||||||| | ||| Sbjct 23451599 GTTTGAAGGGAGTGCGCCAGGGACGTCTGGAATCCTTTGAATAGTGGCCCACAGATATTC 23451540 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGA---TTAACCTGTCCCG 160408 |||||||| || ||||| || | ||| ||||| |||| || || || | | | | Sbjct 23451539 ATCGGGGCTATAGGTGTCTTTTGCCCACTCCATAAACT-TCTGAATTTTTTCATTTTCT- 23451482 Query 160409 CAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGG 160468 || || | | |||||| || | || ||||| || || ||||| || || || || Sbjct 23451481 -AGTACATAACCCACGTAGTTCCTATTGACCACAAAATAGGCACTGCCAGAAAAAATGGG 23451423 Query 160469 TATGGGTATAGGCGG-CGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCA 160527 | | | ||| || ||| |||||| ||||||||| | | | || || | | Sbjct 23451422 TGTTTCGAGAGGAGGACGTA-CTTTGTTTGCACCGGTGTTTGTAATCTTCCCATTAATAA 23451364 Query 160528 GCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGAC 160587 | ||| | |||||||| || || | | |||||| ||| || ||||| | Sbjct 23451363 CTTCAAAGCGCCTTTTCCACCTTTCCTCTTTATAGGCTGGCATTTTTTCAGTTTCTAGGC 23451304 Query 160588 TGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAA 160647 | || |||| | ||||| |||| | |||| ||||| ||||| || || | || | Sbjct 23451303 TATTTTCACCCATTACTGATTTGAGCTTCCTGACAATCTCCAGGTTGGTTTTAATAGGGA 23451244 Query 160648 AGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCC 160707 | || |||| || | ||||||| ||||||||| | | |||| | || || ||| Sbjct 23451243 AATCCATACCACAAAGATTTATCAAGTACTTCCAGTCTGTACTCATTTTGTAGAGATCCT 23451184 Query 160708 TCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTT 160767 ||||||| |||| || ||||| || |||||||||||||| || || || |||| || | Sbjct 23451183 TCATGCAGTTAAGGTCGGCCTGGACTCGGCTCCAGGAAGCATAGACCACAGTCTCCAGCT 23451124 Query 160768 TACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACA 160827 |||||||||||||| ||| ||| || || | || |||| ||| || | || || Sbjct 23451123 GGCTGGCCACAAAGACATTACTGAAGCAGGATGCAATACCCATCACTGCACGTAAAAAGG 23451064 Query 160828 TCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 | ||| | |||| |||||| || | |||||| | ||||||||| ||||||||||| Sbjct 23451063 AATCATCTGACTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATGTAGATGGCCC 23451004 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | || | ||| || | | || ||||| || || | || | ||| || || || |||| Sbjct 23451003 TCAGAAGCCTGTCAAGTAGTTCAATCTTGTGGTGAACTACTACAGAATATGCAATTGGAA 23450944 Query 160948 ACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAAT 161007 |||| | ||| || | || |||| | | || || ||| ||||||| ||| | Sbjct 23450943 ACTCCGCCTCTTCTTGGCTAAGGGGTTCTACGATATATTTGCGCCTCTTGATGAAAGATG 23450884 Query 161008 CACAATCCCGCGTCATGTTGATATA 161032 |||||| ||||||||||||||| Sbjct 23450883 TACAATCGTTCGTCATGTTGATATA 23450859 >seq61 Length=18009331 Score = 190 bits (210), Expect = 2e-43 Identities = 243/331 (73%), Gaps = 3/331 (1%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| |||||||| |||||||| || || || || || |||||||||||| Sbjct 14903414 TAGAGTGTGAGGCAGGTTTTTCCTGAAATCTTCCCAGAACCAAAGGTATTGAAGAGGCAC 14903473 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 ||| | || || || || |||| |||||||||||| || |||| ||||||| | ||| Sbjct 14903474 ATGTAACACCCCTCATCTTCCAGGGTGGTATTCCAGAAGGTTATGGTTGAGTCGCTGAGT 14903533 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| || || ||||| || | | ||| | || ||||| |||| || |||||| Sbjct 14903534 CCCAGATGTGTGATGTTTACCCTGCCCTTAAAGACCGGCTGAACCTCAACCCCATGGTTC 14903593 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 | ||||||||| ||||||| || ||||| || ||||| || |||||||| ||||| ||| Sbjct 14903594 TTACTGAAGGTGACCATGTTTTCTGGGCTTGTAGCCTTCATTTTCTGCCATGTTACAATC 14903653 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 | || || | || || | ||| || || || || || || | || | |||||| ||| Sbjct 14903654 AAGACTTCCTGATGAGTTTTCAGAGAGCAACTTAGGGAGGCTGATGTATGCAGCAGCTCT 14903713 Query 168450 CGCTCA-TCTTGAGTTACGACCTGTCCCTGT 168479 | ||| || || || || || || |||||| Sbjct 14903714 CTTTCATTCGTG-GTCACCACTTG-CCCTGT 14903742 Score = 141 bits (156), Expect = 1e-28 Identities = 165/222 (74%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 |||||| | ||| ||||||| |||| |||||| || ||||| |||||||| || Sbjct 14900902 GTTTGCTTGAAGTCTTTTACAGTCCCCAGATGTAGCACTTTGCAGATCACCTCC---TTC 14900958 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || || ||||| | || ||| | | || | ||||| || ||| |||||| |||||| Sbjct 14900959 CCCACCTGACTTTCGGGGTCTCTGATGTGCAGGATGCTCGTGACAGATGTAGTCCCATTG 14901018 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 | ||| | | | ||| |||||||||||||||||||| || ||||||||||| || Sbjct 14901019 GGGTGTGACAGGCTTTCAGTGCTGTTCTCAATCCCTGACCCATCCACCTTCCAGTTGATA 14901078 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTAAG 168104 | || || || || || |||||||||||||| ||||||||| Sbjct 14901079 ATGGGGGCTGGACGGGCAGTAGCAGAGCAGGTGATATTTAAG 14901120 >seq5 Length=45607681 Score = 147 bits (162), Expect = 3e-30 Identities = 515/790 (65%), Gaps = 23/790 (3%) Strand=Plus/Plus Query 160036 TCAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTT 160095 |||| | | | || | |||||| || | || |||||||| ||| || | |||||||| Sbjct 34232790 TCAGAGTTTTATGCCTCAGATGCTCATTCAAACATTGGATGGCAAAGAGATCAACGTCCC 34232849 Query 160096 CGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGG 160155 || || || || || |||| |||||| || | || ||||||| || || || | Sbjct 34232850 TGTGAAACTTGTTGGCAAACAAATGGTGT---TTGCGCAGCATCCAGTTCAAATCCCCTG 34232906 Query 160156 ACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTT 160215 ||| || | ||| ||||| | | || | || | ||| ||| |||| | || || | Sbjct 34232907 CCCCAAAAATGCACACGGAGCACACCTGGATGCTGCTGCTGGGCAGGTAGTGGGCGCCCT 34232966 Query 160216 TCGCCACGTCACCTTCGTAGTACTGCC-ACTTCACAAACCTGGCT-AT-CGCCTGCATGT 160272 | | || |||||||| ||| || | | || ||||| || || || ||| ||||||| Sbjct 34232967 TGGAAACATCACCTTCAAAGTGGTGTCTATTTGACAAATCTTGCAGATGCGCGTGCATGT 34233026 Query 160273 CGGAGGTGTCGTATTTGTACATC--AGGGGAACGGCACCGGGAACGCCGGGCATACGCTG 160330 | || ||||| |||| | || ||||| | || || ||| | || || | || Sbjct 34233027 CAGACATGTCGCATTTATGGTTCCCAGGGGGTA--CTCCAGGGACGTCTGGAATCCTTTG 34233084 Query 160331 TAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTC 160390 | |||||||| ||| | || || ||||| || | ||| || | ||| ||| | ||||| Sbjct 34233085 AATGGTGGCCCGCAGATACTCATCCGGGCTATAGGCGTCTTTTGCCCACTCCCTAAACTC 34233144 Query 160391 TCCGA-----TTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAG 160445 | || || || || || || | | |||||| || | || ||||| Sbjct 34233145 -CAGAATTTTTTTCACTTTCT---AGTACATAACCCACGTAGTTCCTACTGACCACAAAA 34233200 Query 160446 TACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGT-CTTTGTCCTGACCGGT 160504 || || ||||| || || || ||| | ||| || ||| |||||| || ||||| Sbjct 34233201 TAGGCACTGCCAGAAAAAATGGGTGTTTCGTGAGGAGGA-TGTACTTTGTT-TGCCCGGT 34233258 Query 160505 GTTAGACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGG 160564 ||| | | | || || | | | ||||| ||||||| || || || | Sbjct 34233259 GTTTGTAAAAGCCCCATTAATAACTTCAGAGCGCTTTGTCCACCTTTCCTCTTTATGTGC 34233318 Query 160565 TGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGAT 160624 |||||| || || || || ||||| |||| | |||| |||| | |||| || Sbjct 34233319 TGGCATTTTCTCAGTTTCGAGGCTGTTTTCACCCATTAATAATTTGAGCTTCCTGACAAT 34233378 Query 160625 CTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTT 160684 ||| ||||| || || | || || || |||| || | |||||| || |||||| | Sbjct 34233379 CTCCAGGTTGGTTTTAATAGGGAAATCCATACCACAAAGAATTATCAAGTGCTTCCAGTC 34233438 Query 160685 CGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGG- 160743 || |||| | || | ||| ||||||| |||| || ||||| || | |||||| Sbjct 34233439 TGCACTCATTTTGTAGACATCCTTCATGCAGTTAAGGTCGGCCTGGACTCAGCTCCACAT 34233498 Query 160744 AAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGA 160803 |||| || || || |||| || | |||||||||||||| ||| ||| || || | | Sbjct 34233499 AAGCATAGACAACAGTCTCCAGCTGGCTGGCCACAAAGACATTACTGAAGCAGGATGCAA 34233558 Query 160804 TTCCCACCAC 160813 | |||| ||| Sbjct 34233559 TGCCCATCAC 34233568 >seq84 Length=13838502 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | | |||||| | || | | | |||||| || Sbjct 10615089 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTCTGTCAACTTCCTTTAGATACCTTG 10615148 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 |||| |||| || |||| |||||| | ||||| || |||| | || |||||| || | Sbjct 10615149 CTAGCTCACTGGGAGAGTTATAATCTTCTACATGAATGAATGAATCTGCTGGAATATAAT 10615208 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| || || ||||| || || | ||||| | | || | || | Sbjct 10615209 TCTCATAGTTTTCCCTAGATGGTCCCAACACAACAGGTACAGAGCCAGCCAGGAAAGCAT 10615268 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||| | |||||| || |||| |||||||||||||| | | ||| || | Sbjct 10615269 TGTAGAGCTTTTCGGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 10615328 Query 176422 TACA 176425 | || Sbjct 10615329 TGCA 10615332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577071287580000