Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq260 104 3e-17
>seq260
Length=4071714
Score = 104 bits (114), Expect = 3e-17
Identities = 378/588 (64%), Gaps = 11/588 (2%)
Strand=Plus/Minus
Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213
|| ||| ||| | || ||| ||||| ||||||||| || | ||| || ||| ||
Sbjct 1909767 TAGACAGGCATAGCCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGGAAATGT 1909708
Query 18214 TAACCCGGGCATTATACCTCtttttttt-AGCCAAAATATCGATGCGAAACTACTAGAAA 18272
| || ||||||| |||| |||||| ||||| |||| ||||| ||| ||||||||
Sbjct 1909707 CAGACCAGGCATTAGTCCTCGCTTTTTTGAGCCAGGATATTGATGCAAAAGAACTAGAAA 1909648
Query 18273 AGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGC 18332
|||| || || || | || || |||| | | || ||| | || |||
Sbjct 1909647 AGAAAATTCCTTCCATTGCTGCAAAGGCTACAACACGCTCCGCATGGGTAGCTTCTTTGT 1909588
Query 18333 TCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392
| ||||| ||||| ||| | | | ||| || | | | || |
Sbjct 1909587 CCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTAACACAAGGCAGCGTTCCAATGG 1909528
Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452
||||||| | | || ||| || ||| |||| || |||||||| || | | | ||
Sbjct 1909527 CATTAAAGAGAAATTCCCTTTTCTTAGAAACTTTAATGTAAGTGTCAATAAGGAGACTAT 1909468
Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512
||||||||||||||||| |||| || | || || || | ||| || | | || || |
Sbjct 1909467 ACATTTCAGAATGTATGTTTTCAATGGAAATTTGGAAGCCATAGAAACAGCAGGCTTCTG 1909408
Query 18513 GATATTGAA--TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAG 18569
| |||| || | ||| ||||| || ||||| || ||||| ||||| || |||
Sbjct 1909407 TAACATGAACTTCTTGGCT---AAATCGCTCCACCAAGTTTTCATTCACTATGCCATCAT 1909351
Query 18570 CAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTT--GAGATT 18627
| ||| || ||||||| || ||| ||||| ||| | || | | ||| | | ||
Sbjct 1909350 TTGCTGCAAAGAATGCCAGTACGTATGATATGAAGTGTCTGTCCTCAGGCTTCCGGGCTT 1909291
Query 18628 GTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTC 18687
| || | | || || || || ||||| || || ||| || ||||| || | ||
Sbjct 1909290 CT--CAGTGCTGAATGTCCTTAGAAAGATCCACCTCCTCCACGGTACAAAAGGAAGCCTC 1909233
Query 18688 GGCCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAATAA 18735
|| | |||||||| | | ||||||| | | || |||||||| ||
Sbjct 1909232 AGCTTTCTTGTACATCTGAAAAATATCATGGTATTCAATAGGAAAGAA 1909185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731684457800000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |