Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq260 104 3e-17 >seq260 Length=4071714 Score = 104 bits (114), Expect = 3e-17 Identities = 378/588 (64%), Gaps = 11/588 (2%) Strand=Plus/Minus Query 18154 TAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGT 18213 || ||| ||| | || ||| ||||| ||||||||| || | ||| || ||| || Sbjct 1909767 TAGACAGGCATAGCCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCATTGGGAAATGT 1909708 Query 18214 TAACCCGGGCATTATACCTCtttttttt-AGCCAAAATATCGATGCGAAACTACTAGAAA 18272 | || ||||||| |||| |||||| ||||| |||| ||||| ||| |||||||| Sbjct 1909707 CAGACCAGGCATTAGTCCTCGCTTTTTTGAGCCAGGATATTGATGCAAAAGAACTAGAAA 1909648 Query 18273 AGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGC 18332 |||| || || || | || || |||| | | || ||| | || ||| Sbjct 1909647 AGAAAATTCCTTCCATTGCTGCAAAGGCTACAACACGCTCCGCATGGGTAGCTTCTTTGT 1909588 Query 18333 TCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392 | ||||| ||||| ||| | | | ||| || | | | || | Sbjct 1909587 CCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTAACACAAGGCAGCGTTCCAATGG 1909528 Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452 ||||||| | | || ||| || ||| |||| || |||||||| || | | | || Sbjct 1909527 CATTAAAGAGAAATTCCCTTTTCTTAGAAACTTTAATGTAAGTGTCAATAAGGAGACTAT 1909468 Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 ||||||||||||||||| |||| || | || || || | ||| || | | || || | Sbjct 1909467 ACATTTCAGAATGTATGTTTTCAATGGAAATTTGGAAGCCATAGAAACAGCAGGCTTCTG 1909408 Query 18513 GATATTGAA--TC-TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAG 18569 | |||| || | ||| ||||| || ||||| || ||||| ||||| || ||| Sbjct 1909407 TAACATGAACTTCTTGGCT---AAATCGCTCCACCAAGTTTTCATTCACTATGCCATCAT 1909351 Query 18570 CAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTT--GAGATT 18627 | ||| || ||||||| || ||| ||||| ||| | || | | ||| | | || Sbjct 1909350 TTGCTGCAAAGAATGCCAGTACGTATGATATGAAGTGTCTGTCCTCAGGCTTCCGGGCTT 1909291 Query 18628 GTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTC 18687 | || | | || || || || ||||| || || ||| || ||||| || | || Sbjct 1909290 CT--CAGTGCTGAATGTCCTTAGAAAGATCCACCTCCTCCACGGTACAAAAGGAAGCCTC 1909233 Query 18688 GGCCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAATAA 18735 || | |||||||| | | ||||||| | | || |||||||| || Sbjct 1909232 AGCTTTCTTGTACATCTGAAAAATATCATGGTATTCAATAGGAAAGAA 1909185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731684457800000