Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq296 84.2 3e-11 seq66 84.2 3e-11 seq109 82.4 1e-10 >seq296 Length=3301199 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 172519 GAAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAAT 172578 || ||||||| |||||||||||| |||||| ||||| ||||| ||| ||||| ||| Sbjct 2027157 GAGAAGAAGGAGATTTAGGCCCAGTTTATGTTTTTCAGTGGAGGCATTTTGGGGCAGAAT 2027216 Query 172579 ATATCGACTGTGATACAGATTACACAGGACAAGGAGTGGACCAA 172622 ||| || || ||||||| |||| ||||||||||||||| Sbjct 2027217 ATAAAGAGATGCATTCAGATTATTCAGGCCAAGGAGTGGACCAA 2027260 >seq66 Length=17239560 Score = 84.2 bits (92), Expect = 3e-11 Identities = 116/157 (74%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 172467 TGGAATGATAATGGTTCTCGTGAATTTTTAGATT-TATGCGGGTTTACTGAAAGAAAAGA 172525 ||| ||| ||||| ||||| || ||||| || | || || || ||| || |||| Sbjct 10066304 TGGGATGCCAATGGGTCTCGAGACTTTTTGGACAGTCTG-GGATTCACTTCCCGAGAAGA 10066246 Query 172526 AGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATCGA 172585 ||| ||||| |||||| ||||||| ||||| ||||| ||| ||||| |||| | | Sbjct 10066245 AGGAGATTTGGGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCAGAATACAAAG- 10066187 Query 172586 CTGTG-ATACAGATTACACAGGACAAGGAGTGGACCA 172621 | || || ||||||| |||| |||||||||||||| Sbjct 10066186 CGATGCATTCAGATTATTCAGGTCAAGGAGTGGACCA 10066150 >seq109 Length=11202510 Score = 82.4 bits (90), Expect = 1e-10 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 172522 AAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATA 172581 ||||||| |||||||||||| ||||||| ||||| ||||| ||| ||||| |||||| Sbjct 6651552 AAGAAGGAGATTTAGGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCAGAATATA 6651611 Query 172582 TCGACTGTGATACAGATTACACAGGACAAGGAGTGGACCA 172621 || || ||||||| |||| ||||||||||| || Sbjct 6651612 AAGAGATGCATTCAGATTATTCAGGTCAAGGAGTGGATCA 6651651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632327524540000