Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq87 96.9 3e-15 seq143 95.1 1e-14 seq16 87.8 1e-12 seq3 87.8 1e-12 seq59 86.0 5e-12 seq46 84.2 2e-11 seq451 82.4 6e-11 seq38 82.4 6e-11 >seq87 Length=12919766 Score = 96.9 bits (106), Expect = 3e-15 Identities = 171/246 (70%), Gaps = 10/246 (4%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGC 107611 || ||||| |||||||| ||| | ||||||| || || || || |||| || | || Sbjct 9400337 AAGATGCAGATTTTTGTAAAAGCCCTAACAGGGAAGACGATCACTCTCGAGGTCGAACGC 9400278 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 | | ||||| ||| | ||||| ||||| ||||| ||||| | || || Sbjct 9400277 TCG-GATACAATCGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 9400219 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGG 107727 |||||||||||| |||| ||| || || || ||||| ||| || || || | | Sbjct 9400218 TCAGCAGAGACTGATTTTTGCTGGCAAGCAACTGGAAAATGGATGC----ACCCTGTCTG 9400163 Query 107728 ACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATA 107787 |||||||||||||||||||||| || | || | ||||||||| | | || || | || Sbjct 9400162 ACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTTGTGGTGGCACTA 9400103 Query 107788 ATAAAA 107793 | |||| Sbjct 9400102 AGAAAA 9400097 >seq143 Length=9160510 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || ||||| || || || || ||||||||| | ||| ||| | | Sbjct 9114997 ATGCAGATCTTCGTGAAAACCTTGACTGGTAAGACCATTACCCTTGAAGTAGAGCCCAGT 9115056 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| ||||||| || ||||||||| | || || ||| Sbjct 9115057 GACACCATTGAGAATGTCAAAGCAAAGATTCAAGACAAAGAAGGCATCCCTCCTGACCAG 9115116 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | ||| || ||||||||||| ||| ||| || | ||||||||| Sbjct 9115117 CAGAGATTGATCTTTGCTGGGAAACAGCTGGAAGACAAGCGCACACTGTCTGACTACAAC 9115176 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 || || || || ||||| ||||| |||| || | || |||||| Sbjct 9115177 ATCCAGAAAGAATCTACCCTGCACTTGGTCCTGCGTTT--GAGGGG 9115220 >seq16 Length=33020160 Score = 87.8 bits (96), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 8/149 (5%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA- 107707 ||||| ||||| | || |||||||||||||| |||| ||| ||||| || ||||| Sbjct 11074085 GATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATTTTTGCTGGTAAGCAACTGGAA 11074144 Query 107708 ---GGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| || || | ||||||||||||||||||||||| || | || | || Sbjct 11074145 GATGGACGC----ACCCTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGT 11074200 Query 107765 GTTGAGATTGCGAGGGGGAAATAATAAAA 107793 ||||||| | || || || ||| |||| Sbjct 11074201 GTTGAGACTTCGTGGTGGCGCTAAGAAAA 11074229 >seq3 Length=52730029 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| ||||| | || |||||||||||||| |||| ||| || || || ||||| Sbjct 39783201 GATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATTTCTGCTGGCAAGCAACTGGAA 39783142 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | | || || | |||||||||||||||||||||||||| | || | |||||| Sbjct 39783141 GATGGACACACCCTGTCTGACTACAACATTCAAAAGGAGTCTACTCTTCATCTTGTGTTG 39783082 Query 107769 AGA 107771 ||| Sbjct 39783081 AGA 39783079 >seq59 Length=18190503 Score = 86.0 bits (94), Expect = 5e-12 Identities = 170/247 (69%), Gaps = 11/247 (4%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAG-GCAAAACCATTACCGTCGAAA-CGGAGG 107610 || ||| | ||||| || |||||| |||||| | || || || || |||| || | Sbjct 6110150 AAGATGAAGATTTTCGTAAAAACTCTAACAGAGGAAGACGATCACTCTCGAGGTCGAATT 6110091 Query 107611 CTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGG 107670 |||| ||||| ||| | ||||| ||||| ||||| ||||| | || Sbjct 6110090 CTGG-GATACGATCGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTC 6110032 Query 107671 ATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCG 107726 ||||||||||||| |||| ||| || || || ||||| |||||| || || | Sbjct 6110031 ATCAGCAGAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGC----ACCCTGTCT 6109976 Query 107727 GACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAAT 107786 ||||||||||||||||||||||| || | || | ||||||| | | || || || | Sbjct 6109975 GACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGACACTTCGTGGTGGCGCT 6109916 Query 107787 AATAAAA 107793 || |||| Sbjct 6109915 AAGAAAA 6109909 >seq46 Length=21197313 Score = 84.2 bits (92), Expect = 2e-11 Identities = 169/246 (69%), Gaps = 10/246 (4%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGC 107611 || ||||| ||||| || |||| |||| || ||||| || || |||| || | | Sbjct 15668433 AAGATGCAGATTTTCGTACAAACCCTAACGGGAAAAACAATCACTTTCGAGGTCGAAACC 15668374 Query 107612 TGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGA 107671 | | || || ||| | ||||| ||||| ||||| ||| | | || || Sbjct 15668373 TCG-GACACGATCGAAAATGTAAAGGCGAAGATCCAGGATAAGGAAAGAATTCCTACTGA 15668315 Query 107672 TCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGG 107727 |||||||||||| |||| ||| || || || ||||| |||||| ||| || | | Sbjct 15668314 TCAGCAGAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGC---AACC-TGTCTG 15668259 Query 107728 ACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATA 107787 |||||||||||||||||||||| || | || | ||||||||| | || || || || Sbjct 15668258 ACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGGTGGCGTTA 15668199 Query 107788 ATAAAA 107793 | |||| Sbjct 15668198 AGAAAA 15668193 >seq451 Length=1225386 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | |||||||| |||||||| | || |||| || | Sbjct 1000373 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATTACTCTTGAGGTGGAGCCTAGT 1000314 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || ||| || || || || || || | ||| || ||| Sbjct 1000313 GACACCATAGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 1000254 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || |||| ||||||||||||||||||||| | | || | | ||||||||| Sbjct 1000253 CAGCGTCTGATTTTTGCGGGTAAACAGCTGGAGGATGGCCGCACTCTCTCAGACTACAAC 1000194 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | || ||||| || ||||| ||||| || Sbjct 1000193 ATCTAGAAAGAGTCCACCCTGCACCTGGTGCTG 1000161 >seq38 Length=23493148 Score = 82.4 bits (90), Expect = 6e-11 Identities = 108/149 (72%), Gaps = 8/149 (5%) Strand=Plus/Minus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA- 107707 ||||| ||||| | || |||||||||||||| |||| ||| || || || ||||| Sbjct 5891005 GATAAGGAAGGAATTCCTCCTGATCAGCAGAGACTGATTTTTGCTGGCAAGCAACTGGAA 5890946 Query 107708 ---GGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| || || | ||||||||||||||||||||||| || | || | || Sbjct 5890945 GATGGACGC----ACCCTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTTGT 5890890 Query 107765 GTTGAGATTGCGAGGGGGAAATAATAAAA 107793 ||||||| | || || || ||| |||| Sbjct 5890889 GTTGAGACTTCGTGGTGGCGCTAAGAAAA 5890861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398777143124500