Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_024303.1
Length=144898
Score E
Sequences producing significant alignments: (Bits) Value
seq731 178 1e-39
seq245 86.0 6e-12
seq131 86.0 6e-12
seq66 86.0 6e-12
>seq731
Length=123559
Score = 178 bits (196), Expect = 1e-39
Identities = 618/950 (65%), Gaps = 57/950 (6%)
Strand=Plus/Plus
Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383
||||||||||||||| | || |||||||||||||| || ||| ||| || || ||
Sbjct 39558 AAGACCCTAGCTGCCATCGGGACAGGCTTTGACTGTGCTAGCAAGATGGAAATACAATTG 39617
Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443
|||||| ||| || || | | || || ||| | | ||| ||||||||||| ||
Sbjct 39618 GTGCAAAGTCTTGGTGTGCCTCCGGAGAGAATAATCTATGCAAATCCTTGTAAACAAGTA 39677
Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503
|| || || | |||||| | | | |||||| | |||||||||||||||| ||||
Sbjct 39678 TCTCAAATTAAGTATGCTACCAATAATGGAGTTCAGATGATGACTTTTGATAGCGAAGTC 39737
Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563
||| | | ||| ||| | || | | || ||| |||| || ||||| |
Sbjct 39738 GAGTTGATGAAAGTTGCCAGGGCACATCCAAAGGCAAAGTTGGTTTTGCGGATTGCCACG 39797
Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAG-CCAG 20622
||||| || || ||| | | || ||||| || ||||| || | | | ||| ||||
Sbjct 39798 GATGATTCCAAAGCAGTCTGTCGTCTCAGTGTTAAATTTGGTGC-CACACTCAAGACCAG 39856
Query 20623 CCAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCA 20682
|| ||| || ||| ||| ||| | || | || || || || |||| |||||
Sbjct 39857 TAGACTTCTGTTAGAACGGGCTAAAGAGCTAAATATTGATGTCATTGGTGTCATTTTCCA 39916
Query 20683 CGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAG 20742
||||| |||||||| | ||| | || | | | |||| || |||| ||| | |
Sbjct 39917 TGTGGGAAGTGGCTGTACCGATCCTGAGACCTTCGTGCAAGCAATCTCTGATGCCCGCTG 39976
Query 20743 AGCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGC 20800
| |||||| | || ||| | | || || |||||| || | |||||||||||
Sbjct 39977 TGTCTTTGACATGGG--AGCTAAAGTTGGTTTCAGCATGTATCTGCTAGATATTGGTGGT 40034
Query 20801 GGCTTTCCCGGGATCAATG-AGAT-TGAGCCAACT----TTTGAGGACATTGCAGAAGTC 20854
|||||| || ||||| || |||| ||| |||| ||||| | || | | ||
Sbjct 40035 GGCTTT-CCTGGATC--TGAAGATGTGA---AACTTAAATTTGAAAAGATCACCAATGTA 40088
Query 20855 ATTAACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAA 20914
|| || | || |||| | | |||||||| ||| ||| ||| |||| ||||
Sbjct 40089 ATCAATCCAGCACTGGACAAGTATTTTCCATCAGATTGTGGAGTGAAAATCATTGCTGAA 40148
Query 20915 CCTGGCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTA--AAA 20972
|| ||||| ||||| | | | || || | || | ||||| | | | ||||| | |||
Sbjct 40149 CCAGGCAGATACTATGTTGCATCAGCTTTCACCCTTGCTGTTAATATCATTGCCAAGAAA 40208
Query 20973 AGTGTGTTGAAG--ACA------CTC-----CTGGAGATAAA--AAG----------TTT 21007
||| | ||| ||| ||| || |||| || ||| |||
Sbjct 40209 CTTGTACTAAAGGAACAAACAGGCTCTGATGATGAAGATGAATCAAGTGAACAAACCTTT 40268
Query 21008 ATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCT 21067
||||||||||| |||||||| || |||| ||||||||||| | | | | |||||
Sbjct 40269 ATGTATTATGTGAATGATGGAGTATATGTATCATTTAACTGCATCCTTTATGATCATGCA 40328
Query 21068 CGTCCTATGCCTATGCTGCTTAAAGAAAA---ACGC---CTTGAAGACAAAGACTATGTT 21121
| | | | | || |||| | |||| || | | || || || | ||
Sbjct 40329 C-----ACGTC-AAGCCCCTTATACAAAAGAGACCCAAACCAGATGAAAAGTATTACTCA 40382
Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181
|||||||| ||||| || | || ||||| | ||| | |||||| | || ||||| |||
Sbjct 40383 TCTAGCATATGGGGACCAACGTGTGATGGTCTTGATCGGATTGTTGAACGCTGTGACCTG 40442
Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTA 21231
||||| | || ||||| || ||| | |||||||||||||||| |||||
Sbjct 40443 CCAGAAATGCATGTGGGTGATTGGATGCTATTTGAAAACATGGGTGCTTA 40492
>seq245
Length=4390862
Score = 86.0 bits (94), Expect = 6e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181
|||||||| ||||| || | || ||||| | ||||| ||||| |||| ||||| |||
Sbjct 1057623 TCTAGCATATGGGGACCAACGTGTGATGGTCTTGATTGGCTTGTTGAGCGCTGTGACCTG 1057564
Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTA 21231
||||| | || ||||| || ||| | | |||||||||||||| |||||
Sbjct 1057563 CCAGAAATGCATGTGGGTGATTGGATGCTGTTTGAAAACATGGGTGCTTA 1057514
>seq131
Length=9795181
Score = 86.0 bits (94), Expect = 6e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181
|||||||| ||||| || | || ||||| | ||| | |||||| | || ||||| |||
Sbjct 9164934 TCTAGCATATGGGGACCAACATGTGATGGTCTTGATCGGATTGTTGAACGCTGTGACCTG 9164993
Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTA 21231
||||| | || ||||| || ||| | |||||||||||||||| |||||
Sbjct 9164994 CCAGAAATGCATGTGGGTGATTGGATGCTATTTGAAAACATGGGTGCTTA 9165043
>seq66
Length=17239560
Score = 86.0 bits (94), Expect = 6e-12
Identities = 108/146 (74%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181
|||||||| |||| || | || ||||| | ||| |||||| || | ||||| |||
Sbjct 15273321 TCTAGCATATGGGAACCAACATGTGATGGTCTTGATCAGATTGTTGAGTGCTGTGACCTG 15273380
Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241
||||| | || ||||| |||||| | |||||||||||||||| ||||| | ||| |
Sbjct 15273381 CCAGAAATGCATGTGGGTGACTGGATGCTATTTGAAAACATGGGTGCTTATA-CTTTTGC 15273439
Query 21242 AGCT-CTTCAACCTTTAACGGCTTCC 21266
||| |||| || || || || ||||
Sbjct 15273440 TGCTGCTTCTACTTTCAATGGATTCC 15273465
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 463426816440000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |