Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq731 178 1e-39 seq245 86.0 6e-12 seq131 86.0 6e-12 seq66 86.0 6e-12 >seq731 Length=123559 Score = 178 bits (196), Expect = 1e-39 Identities = 618/950 (65%), Gaps = 57/950 (6%) Strand=Plus/Plus Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 ||||||||||||||| | || |||||||||||||| || ||| ||| || || || Sbjct 39558 AAGACCCTAGCTGCCATCGGGACAGGCTTTGACTGTGCTAGCAAGATGGAAATACAATTG 39617 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||||| ||| || || | | || || ||| | | ||| ||||||||||| || Sbjct 39618 GTGCAAAGTCTTGGTGTGCCTCCGGAGAGAATAATCTATGCAAATCCTTGTAAACAAGTA 39677 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | |||||| | | | |||||| | |||||||||||||||| |||| Sbjct 39678 TCTCAAATTAAGTATGCTACCAATAATGGAGTTCAGATGATGACTTTTGATAGCGAAGTC 39737 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||| | | ||| ||| | || | | || ||| |||| || ||||| | Sbjct 39738 GAGTTGATGAAAGTTGCCAGGGCACATCCAAAGGCAAAGTTGGTTTTGCGGATTGCCACG 39797 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAG-CCAG 20622 ||||| || || ||| | | || ||||| || ||||| || | | | ||| |||| Sbjct 39798 GATGATTCCAAAGCAGTCTGTCGTCTCAGTGTTAAATTTGGTGC-CACACTCAAGACCAG 39856 Query 20623 CCAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCA 20682 || ||| || ||| ||| ||| | || | || || || || |||| ||||| Sbjct 39857 TAGACTTCTGTTAGAACGGGCTAAAGAGCTAAATATTGATGTCATTGGTGTCATTTTCCA 39916 Query 20683 CGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAG 20742 ||||| |||||||| | ||| | || | | | |||| || |||| ||| | | Sbjct 39917 TGTGGGAAGTGGCTGTACCGATCCTGAGACCTTCGTGCAAGCAATCTCTGATGCCCGCTG 39976 Query 20743 AGCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGC 20800 | |||||| | || ||| | | || || |||||| || | ||||||||||| Sbjct 39977 TGTCTTTGACATGGG--AGCTAAAGTTGGTTTCAGCATGTATCTGCTAGATATTGGTGGT 40034 Query 20801 GGCTTTCCCGGGATCAATG-AGAT-TGAGCCAACT----TTTGAGGACATTGCAGAAGTC 20854 |||||| || ||||| || |||| ||| |||| ||||| | || | | || Sbjct 40035 GGCTTT-CCTGGATC--TGAAGATGTGA---AACTTAAATTTGAAAAGATCACCAATGTA 40088 Query 20855 ATTAACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAA 20914 || || | || |||| | | |||||||| ||| ||| ||| |||| |||| Sbjct 40089 ATCAATCCAGCACTGGACAAGTATTTTCCATCAGATTGTGGAGTGAAAATCATTGCTGAA 40148 Query 20915 CCTGGCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTA--AAA 20972 || ||||| ||||| | | | || || | || | ||||| | | | ||||| | ||| Sbjct 40149 CCAGGCAGATACTATGTTGCATCAGCTTTCACCCTTGCTGTTAATATCATTGCCAAGAAA 40208 Query 20973 AGTGTGTTGAAG--ACA------CTC-----CTGGAGATAAA--AAG----------TTT 21007 ||| | ||| ||| ||| || |||| || ||| ||| Sbjct 40209 CTTGTACTAAAGGAACAAACAGGCTCTGATGATGAAGATGAATCAAGTGAACAAACCTTT 40268 Query 21008 ATGTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCT 21067 ||||||||||| |||||||| || |||| ||||||||||| | | | | ||||| Sbjct 40269 ATGTATTATGTGAATGATGGAGTATATGTATCATTTAACTGCATCCTTTATGATCATGCA 40328 Query 21068 CGTCCTATGCCTATGCTGCTTAAAGAAAA---ACGC---CTTGAAGACAAAGACTATGTT 21121 | | | | | || |||| | |||| || | | || || || | || Sbjct 40329 C-----ACGTC-AAGCCCCTTATACAAAAGAGACCCAAACCAGATGAAAAGTATTACTCA 40382 Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 |||||||| ||||| || | || ||||| | ||| | |||||| | || ||||| ||| Sbjct 40383 TCTAGCATATGGGGACCAACGTGTGATGGTCTTGATCGGATTGTTGAACGCTGTGACCTG 40442 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTA 21231 ||||| | || ||||| || ||| | |||||||||||||||| ||||| Sbjct 40443 CCAGAAATGCATGTGGGTGATTGGATGCTATTTGAAAACATGGGTGCTTA 40492 >seq245 Length=4390862 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 |||||||| ||||| || | || ||||| | ||||| ||||| |||| ||||| ||| Sbjct 1057623 TCTAGCATATGGGGACCAACGTGTGATGGTCTTGATTGGCTTGTTGAGCGCTGTGACCTG 1057564 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTA 21231 ||||| | || ||||| || ||| | | |||||||||||||| ||||| Sbjct 1057563 CCAGAAATGCATGTGGGTGATTGGATGCTGTTTGAAAACATGGGTGCTTA 1057514 >seq131 Length=9795181 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 |||||||| ||||| || | || ||||| | ||| | |||||| | || ||||| ||| Sbjct 9164934 TCTAGCATATGGGGACCAACATGTGATGGTCTTGATCGGATTGTTGAACGCTGTGACCTG 9164993 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTA 21231 ||||| | || ||||| || ||| | |||||||||||||||| ||||| Sbjct 9164994 CCAGAAATGCATGTGGGTGATTGGATGCTATTTGAAAACATGGGTGCTTA 9165043 >seq66 Length=17239560 Score = 86.0 bits (94), Expect = 6e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 |||||||| |||| || | || ||||| | ||| |||||| || | ||||| ||| Sbjct 15273321 TCTAGCATATGGGAACCAACATGTGATGGTCTTGATCAGATTGTTGAGTGCTGTGACCTG 15273380 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 ||||| | || ||||| |||||| | |||||||||||||||| ||||| | ||| | Sbjct 15273381 CCAGAAATGCATGTGGGTGACTGGATGCTATTTGAAAACATGGGTGCTTATA-CTTTTGC 15273439 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCC 21266 ||| |||| || || || || |||| Sbjct 15273440 TGCTGCTTCTACTTTCAATGGATTCC 15273465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463426816440000