Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq281 107 3e-18 seq174 107 3e-18 seq54 107 3e-18 seq213 105 9e-18 seq241 104 3e-17 seq33 96.9 5e-15 seq13 91.5 2e-13 seq74 87.8 2e-12 seq45 87.8 2e-12 seq5 84.2 3e-11 >seq281 Length=3633602 Score = 107 bits (118), Expect = 3e-18 Identities = 73/81 (90%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 || |||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||| Sbjct 144098 CCCGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 144039 Query 11785 ATTCCCCGACGAGGAGGGAGG 11805 ||||||||||| ||||| ||| Sbjct 144038 ATTCCCCGACGGGGAGGCAGG 144018 Score = 105 bits (116), Expect = 9e-18 Identities = 69/75 (92%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 ||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 148298 AGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 148357 Query 11787 TCCCCGACGAGGAGG 11801 ||||||||| ||||| Sbjct 148358 TCCCCGACGGGGAGG 148372 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 144094 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 144035 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 144034 CCCGACGGGGAG 144023 Score = 104 bits (114), Expect = 3e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 147013 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 146954 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 146953 CCCCGACGGGGAGG 146940 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 147012 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 146953 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 146952 CCCGACGGGGAG 146941 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 148297 TAGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 148356 Query 8715 TTCCCCGACGAGGAG 8729 |||||||||| |||| Sbjct 148357 TTCCCCGACGGGGAG 148371 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 144023 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 144082 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 144083 TACTAACGAGGA 144094 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 146941 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 147000 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 147001 TACTAACGAGGA 147012 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 148371 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 148312 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 148311 TACTAACGAGGA 148300 >seq174 Length=7503985 Score = 107 bits (118), Expect = 3e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 4177797 ATTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 4177856 Query 8716 TCCCCGACGAGGAG 8729 ||||||||| |||| Sbjct 4177857 TCCCCGACGGGGAG 4177870 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 4177799 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4177858 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 4177859 CCCGACGGGGAG 4177870 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 4177870 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 4177811 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 4177810 TACTAACGAGGA 4177799 >seq54 Length=18522067 Score = 107 bits (118), Expect = 3e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 8653 CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTC 8712 || ||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| Sbjct 9994948 CTCATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 9994889 Query 8713 GATTCCCCGACGAGGAG 8729 |||||||||||| |||| Sbjct 9994888 GATTCCCCGACGGGGAG 9994872 Score = 104 bits (114), Expect = 3e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 9994946 CATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 9994887 Query 11786 TTCCCCGACGAGGAGGG 11802 |||||||||| |||||| Sbjct 9994886 TTCCCCGACGGGGAGGG 9994870 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 9994872 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 9994931 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 9994932 TACTAACGAGGA 9994943 >seq213 Length=5512515 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 2443617 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 2443558 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 2443557 CCCCGACGGGGAG 2443545 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 2443616 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2443557 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 2443556 CCCGACGGGGAGG 2443544 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 2443545 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2443604 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 2443605 TACTAACGAGGA 2443616 >seq241 Length=4414997 Score = 104 bits (114), Expect = 3e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 27693 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 27752 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 27753 CCCCGACGGGGAGG 27766 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 27694 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 27753 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 27754 CCCGACGGGGAG 27765 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 27765 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 27706 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 27705 TACTAACGAGGA 27694 >seq33 Length=25239533 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||||||||||||| || ||||| || | ||||| ||||||||||||||||| ||| Sbjct 4585589 ATTCCTCGTTAGTATAGTAGTAAGTATCCCTGCCTGTCACACGGGAGACCGGGGTTTGAT 4585530 Query 8716 TCCCCGACGAGGA 8728 ||||||||| ||| Sbjct 4585529 TCCCCGACGGGGA 4585517 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/71 (89%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||| ||| |||| || | ||||| ||||||||||||||||| ||||| Sbjct 4585587 TCCTCGTTAGTATAGTAGTAAGTATCCCTGCCTGTCACACGGGAGACCGGGGTTTGATTC 4585528 Query 11789 CCCGACGAGGA 11799 ||||||| ||| Sbjct 4585527 CCCGACGGGGA 4585517 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 139354 TCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTAT 139413 ||| ||||||||| || ||||||||||||||||| |||| | |||||| | || ||||| Sbjct 4585517 TCCCCGTCGGGGAATCAAACCCCGGTCTCCCGTGTGACAGGCAGGGATACTTACTACTAT 4585576 Query 139414 ACTAACGAGGA 139424 ||||||||||| Sbjct 4585577 ACTAACGAGGA 4585587 >seq13 Length=36266773 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||| ||||||||||||| ||||| |||| ||||| ||||||||||||||||||||| | Sbjct 19957113 TCCTCCTTAGTATAGTGGTGAGTATCCCCGCCTGTCACACGGGAGACCGGGGTTCGATAC 19957172 Query 8718 CCCGACGAGGAGCAGAGGCC 8737 || || | | ||||| ||| Sbjct 19957173 CCTGAGGGGAGGCAGATGCC 19957192 Score = 86.0 bits (94), Expect = 8e-12 Identities = 66/76 (87%), Gaps = 2/76 (3%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||| ||||||||||||| ||||| |||| ||||| ||||||||||||||||||||| | Sbjct 19957113 TCCTCCTTAGTATAGTGGTGAGTATCCCCGCCTGTCACACGGGAGACCGGGGTTCGATAC 19957172 Query 11789 CCCGACGAGGAGGGAG 11804 || || | ||||| || Sbjct 19957173 CCTGA-GGGGAGGCAG 19957187 >seq74 Length=15695473 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 11731 CCTCGTTAGTATAGTGGTAGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 11790 ||||||||||||| | || |||| |||| ||||| ||||| |||| |||||||||||||| Sbjct 12408457 CCTCGTTAGTATACTAGTGGTATCCCCGCCTGTCACACGGTAGACTGGGGTTCGATTCCC 12408398 Query 11791 CGACGAGGAGG 11801 ||||| ||||| Sbjct 12408397 CGACGGGGAGG 12408387 >seq45 Length=21324102 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/92 (84%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 8662 CGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCG 8721 ||||||||||||| | ||||| |||| ||||| | ||||||||||||||||||||||||| Sbjct 19055989 CGTTAGTATAGTGATGAGTATCCCCGCCTGTCACTCGGGAGACCGGGGTTCGATTCCCCG 19055930 Query 8722 ACGAGGAG-CAGAGGC-CGAAA-TCACGACTA 8750 || |||| || || | ||||| ||| || || Sbjct 19055929 ACAGGGAGACATAGACGCGAAACTCAAGATTA 19055898 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/68 (88%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 11734 CGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCG 11792 ||||||||||||| | ||||| |||| ||||| | ||||||||||||||||||||||||| Sbjct 19055989 CGTTAGTATAGTGATGAGTATCCCCGCCTGTCACTCGGGAGACCGGGGTTCGATTCCCCG 19055930 Query 11793 ACGAGGAG 11800 || |||| Sbjct 19055929 ACAGGGAG 19055922 >seq5 Length=45607681 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/78 (86%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 11723 AACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGT 11781 || || |||||||||||||||||||| ||||| |||| ||||| | ||||||||||||| Sbjct 34527873 AAGCCTGTCCTCGTTAGTATAGTGGTGAGTAT-CCCGCCTGTCACGTGGGAGACCGGGGT 34527815 Query 11782 TCGATTCCCCGACGAGGA 11799 ||||||| |||| | ||| Sbjct 34527814 TCGATTCTCCGAAGGGGA 34527797 Score = 84.2 bits (92), Expect = 3e-11 Identities = 62/71 (87%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 34527866 TCCTCGTTAGTATAGTGGTGAGTAT-CCCGCCTGTCACGTGGGAGACCGGGGTTCGATTC 34527808 Query 8718 CCCGACGAGGA 8728 |||| | ||| Sbjct 34527807 TCCGAAGGGGA 34527797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652677508520000