Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq281 107 3e-18
seq174 107 3e-18
seq54 107 3e-18
seq213 105 9e-18
seq241 104 3e-17
seq33 96.9 5e-15
seq13 91.5 2e-13
seq74 87.8 2e-12
seq45 87.8 2e-12
seq5 84.2 3e-11
>seq281
Length=3633602
Score = 107 bits (118), Expect = 3e-18
Identities = 73/81 (90%), Gaps = 1/81 (1%)
Strand=Plus/Minus
Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784
|| |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||
Sbjct 144098 CCCGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 144039
Query 11785 ATTCCCCGACGAGGAGGGAGG 11805
||||||||||| ||||| |||
Sbjct 144038 ATTCCCCGACGGGGAGGCAGG 144018
Score = 105 bits (116), Expect = 9e-18
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786
||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 148298 AGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 148357
Query 11787 TCCCCGACGAGGAGG 11801
||||||||| |||||
Sbjct 148358 TCCCCGACGGGGAGG 148372
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 144094 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 144035
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 144034 CCCGACGGGGAG 144023
Score = 104 bits (114), Expect = 3e-17
Identities = 68/74 (92%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 147013 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 146954
Query 11788 CCCCGACGAGGAGG 11801
|||||||| |||||
Sbjct 146953 CCCCGACGGGGAGG 146940
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 147012 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 146953
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 146952 CCCGACGGGGAG 146941
Score = 104 bits (114), Expect = 3e-17
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714
|| ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||
Sbjct 148297 TAGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 148356
Query 8715 TTCCCCGACGAGGAG 8729
|||||||||| ||||
Sbjct 148357 TTCCCCGACGGGGAG 148371
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 144023 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 144082
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 144083 TACTAACGAGGA 144094
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 146941 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 147000
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 147001 TACTAACGAGGA 147012
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 148371 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 148312
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 148311 TACTAACGAGGA 148300
>seq174
Length=7503985
Score = 107 bits (118), Expect = 3e-18
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715
||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 4177797 ATTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 4177856
Query 8716 TCCCCGACGAGGAG 8729
||||||||| ||||
Sbjct 4177857 TCCCCGACGGGGAG 4177870
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||||||||||||||||| |||| |||| ||||| | |||||||||||||||||||||
Sbjct 4177799 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 4177858
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 4177859 CCCGACGGGGAG 4177870
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 4177870 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 4177811
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 4177810 TACTAACGAGGA 4177799
>seq54
Length=18522067
Score = 107 bits (118), Expect = 3e-18
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 8653 CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTC 8712
|| ||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||
Sbjct 9994948 CTCATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 9994889
Query 8713 GATTCCCCGACGAGGAG 8729
|||||||||||| ||||
Sbjct 9994888 GATTCCCCGACGGGGAG 9994872
Score = 104 bits (114), Expect = 3e-17
Identities = 70/77 (91%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
|| ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||
Sbjct 9994946 CATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 9994887
Query 11786 TTCCCCGACGAGGAGGG 11802
|||||||||| ||||||
Sbjct 9994886 TTCCCCGACGGGGAGGG 9994870
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 9994872 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 9994931
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 9994932 TACTAACGAGGA 9994943
>seq213
Length=5512515
Score = 105 bits (116), Expect = 9e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 2443617 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 2443558
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 2443557 CCCCGACGGGGAG 2443545
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2443616 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2443557
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 2443556 CCCGACGGGGAGG 2443544
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 2443545 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2443604
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 2443605 TACTAACGAGGA 2443616
>seq241
Length=4414997
Score = 104 bits (114), Expect = 3e-17
Identities = 68/74 (92%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 27693 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 27752
Query 11788 CCCCGACGAGGAGG 11801
|||||||| |||||
Sbjct 27753 CCCCGACGGGGAGG 27766
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 27694 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 27753
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 27754 CCCGACGGGGAG 27765
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 27765 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 27706
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 27705 TACTAACGAGGA 27694
>seq33
Length=25239533
Score = 96.9 bits (106), Expect = 5e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715
|||||||||||||||||| || ||||| || | ||||| ||||||||||||||||| |||
Sbjct 4585589 ATTCCTCGTTAGTATAGTAGTAAGTATCCCTGCCTGTCACACGGGAGACCGGGGTTTGAT 4585530
Query 8716 TCCCCGACGAGGA 8728
||||||||| |||
Sbjct 4585529 TCCCCGACGGGGA 4585517
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/71 (89%), Gaps = 1/71 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||||||||||||| ||| |||| || | ||||| ||||||||||||||||| |||||
Sbjct 4585587 TCCTCGTTAGTATAGTAGTAAGTATCCCTGCCTGTCACACGGGAGACCGGGGTTTGATTC 4585528
Query 11789 CCCGACGAGGA 11799
||||||| |||
Sbjct 4585527 CCCGACGGGGA 4585517
Score = 84.2 bits (92), Expect = 3e-11
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 139354 TCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTAT 139413
||| ||||||||| || ||||||||||||||||| |||| | |||||| | || |||||
Sbjct 4585517 TCCCCGTCGGGGAATCAAACCCCGGTCTCCCGTGTGACAGGCAGGGATACTTACTACTAT 4585576
Query 139414 ACTAACGAGGA 139424
|||||||||||
Sbjct 4585577 ACTAACGAGGA 4585587
>seq13
Length=36266773
Score = 91.5 bits (100), Expect = 2e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||| ||||||||||||| ||||| |||| ||||| ||||||||||||||||||||| |
Sbjct 19957113 TCCTCCTTAGTATAGTGGTGAGTATCCCCGCCTGTCACACGGGAGACCGGGGTTCGATAC 19957172
Query 8718 CCCGACGAGGAGCAGAGGCC 8737
|| || | | ||||| |||
Sbjct 19957173 CCTGAGGGGAGGCAGATGCC 19957192
Score = 86.0 bits (94), Expect = 8e-12
Identities = 66/76 (87%), Gaps = 2/76 (3%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||| ||||||||||||| ||||| |||| ||||| ||||||||||||||||||||| |
Sbjct 19957113 TCCTCCTTAGTATAGTGGTGAGTATCCCCGCCTGTCACACGGGAGACCGGGGTTCGATAC 19957172
Query 11789 CCCGACGAGGAGGGAG 11804
|| || | ||||| ||
Sbjct 19957173 CCTGA-GGGGAGGCAG 19957187
>seq74
Length=15695473
Score = 87.8 bits (96), Expect = 2e-12
Identities = 62/71 (87%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 11731 CCTCGTTAGTATAGTGGTAGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 11790
||||||||||||| | || |||| |||| ||||| ||||| |||| ||||||||||||||
Sbjct 12408457 CCTCGTTAGTATACTAGTGGTATCCCCGCCTGTCACACGGTAGACTGGGGTTCGATTCCC 12408398
Query 11791 CGACGAGGAGG 11801
||||| |||||
Sbjct 12408397 CGACGGGGAGG 12408387
>seq45
Length=21324102
Score = 87.8 bits (96), Expect = 2e-12
Identities = 77/92 (84%), Gaps = 3/92 (3%)
Strand=Plus/Minus
Query 8662 CGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCG 8721
||||||||||||| | ||||| |||| ||||| | |||||||||||||||||||||||||
Sbjct 19055989 CGTTAGTATAGTGATGAGTATCCCCGCCTGTCACTCGGGAGACCGGGGTTCGATTCCCCG 19055930
Query 8722 ACGAGGAG-CAGAGGC-CGAAA-TCACGACTA 8750
|| |||| || || | ||||| ||| || ||
Sbjct 19055929 ACAGGGAGACATAGACGCGAAACTCAAGATTA 19055898
Score = 84.2 bits (92), Expect = 3e-11
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand=Plus/Minus
Query 11734 CGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCCCG 11792
||||||||||||| | ||||| |||| ||||| | |||||||||||||||||||||||||
Sbjct 19055989 CGTTAGTATAGTGATGAGTATCCCCGCCTGTCACTCGGGAGACCGGGGTTCGATTCCCCG 19055930
Query 11793 ACGAGGAG 11800
|| ||||
Sbjct 19055929 ACAGGGAG 19055922
>seq5
Length=45607681
Score = 84.2 bits (92), Expect = 3e-11
Identities = 67/78 (86%), Gaps = 2/78 (3%)
Strand=Plus/Minus
Query 11723 AACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGT 11781
|| || |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||
Sbjct 34527873 AAGCCTGTCCTCGTTAGTATAGTGGTGAGTAT-CCCGCCTGTCACGTGGGAGACCGGGGT 34527815
Query 11782 TCGATTCCCCGACGAGGA 11799
||||||| |||| | |||
Sbjct 34527814 TCGATTCTCCGAAGGGGA 34527797
Score = 84.2 bits (92), Expect = 3e-11
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 34527866 TCCTCGTTAGTATAGTGGTGAGTAT-CCCGCCTGTCACGTGGGAGACCGGGGTTCGATTC 34527808
Query 8718 CCCGACGAGGA 8728
|||| | |||
Sbjct 34527807 TCCGAAGGGGA 34527797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652677508520000
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