Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq14 237 2e-57 seq61 141 1e-28 >seq14 Length=34905451 Score = 237 bits (262), Expect = 2e-57 Identities = 580/870 (67%), Gaps = 17/870 (2%) Strand=Plus/Minus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 || |||||||| || |||| ||| || | | | || ||||| || | |||||| | Sbjct 23451790 TCAAACTTGTTGGCAAACAAGTGGTGTTTG--CGT-AACATCCAGTTCAAATCCCCTGCC 23451734 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || || ||||||||||| ||||| || | ||| ||||| || || || |||| || | | Sbjct 23451733 CCAAAAACGCACACGGAGCGCACATGGATGCCACTGCAGGGTGGGTAGGGGGCGCCCTTG 23451674 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 ||||| || || |||| ||||| || || ||||| | | || |||||||| || Sbjct 23451673 GAAACATCGCCTTCAAAGTAGTGCCATTTGACAAACCTTGCAAACGCGTGCATGTCAGAT 23451614 Query 162301 GTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTA 162360 |||||||| || | ||| || | || ||||| || | || | || || | ||| Sbjct 23451613 GTGTCGTATTTATCGTTTGAAGGGAGTGCGCCAGGGACGTCTGGAATCCTTTGAATAGTG 23451554 Query 162361 GCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACC 162420 |||||||| | ||| || || ||||| || || || | ||||||||| |||| |||| Sbjct 23451553 GCCCACAGATATTCATCGGGGCTATAGGTGTCTTTTGCCCACTCCATAAACT-TCTGAAT 23451495 Query 162421 GTTTT-ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACC 162479 |||| || | ||| | ||| |||||| ||| | || | ||| || || || || Sbjct 23451494 TTTTTCATTTTCTAGTACATAACCCACGTAGTTCCTATTGACCACAAAATAGGCACTGCC 23451435 Query 162480 AGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCAT 162539 |||||| | |||| | | |||||| | |||||| | ||| ||||| || | Sbjct 23451434 AGAAAAAATGGGTGTTTCGAGAGGAGGACGTACTTTGTTTGCACCGGTGTT-TGTAATCT 23451376 Query 162540 TCCCTCT----ACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGT 162595 |||| | || | | | | || | ||||||| || ||| || | | | Sbjct 23451375 TCCCATTAATAACTTCAAAGCGCCTTT---TCCACCTTTCCTCTTTATAGGCTGGCATTT 23451319 Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 ||| || ||||| || || |||| | | || |||| | || ||||| || | Sbjct 23451318 TTTCAGTTTCTAGGCTATTTTCACCCATTACTGATTTGAGCTTCCTGACAATCTCCAGGT 23451259 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 |||| |||| || || || | || || ||||| || | || ||||| | || | Sbjct 23451258 TGGTTTTAATAGGGAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTCTGTACTCA 23451199 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 | ||| ||||||| | ||||| || ||||||||||| || ||||| || || || | Sbjct 23451198 TTTTGTAGAGATCCTTCATGCAGTTAAGGTCGGCCTGGACTCGGCTCCAGGAAGCATAGA 23451139 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835 | || |||||| | |||| ||||||||||| ||| || || | || ||||||| Sbjct 23451138 CCACAGTCTCCAGCTGGCTGGCCACAAAGACATTACTGAAGCAGGATGCAATACCCATCA 23451079 Query 162836 CGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTG 162893 | || || | || ||| || | || | || || || | ||| || | |||||| Sbjct 23451078 CTGCACGTAAAAAGGAATC--ATCTGACTTTTTGTCCACATGAATGCAATAGAAATTCTG 23451021 Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953 ||| ||||||||||||||| | || || | | || ||||| ||||| || || | Sbjct 23451020 AGGCATGTAGATGGCCCTCAGAAGCCTGTCAAGTAGTTCAATCTTGTGGTGAACTACTAC 23450961 Query 162954 AGAATACGCTATGGGGAACTCAGCCTCCTC 162983 |||||| || || || ||||| ||||| || Sbjct 23450960 AGAATATGCAATTGGAAACTCCGCCTCTTC 23450931 >seq61 Length=18009331 Score = 141 bits (156), Expect = 1e-28 Identities = 177/242 (73%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 171500 GTAACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCC 171559 || |||||||| ||| |||| |||||||||||| |||| |||||||| ||||||||| Sbjct 14900896 GTGACAGTTTGCTTGAAGTCTTTTACAGTCCCCAGATGTAGCACTTTGCAGATCACCTCC 14900955 Query 171560 TCGTTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTC 171619 | | ||||| ||||||| || ||| | | || || ||||| || |||||||||||| Sbjct 14900956 T---TCCCCACCTGACTTTCGGGGTCTCTGATGTGCAGGATGCTCGTGACAGATGTAGTC 14901012 Query 171620 CCGTTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAA 171679 || || | ||| | | ||| ||| || || || || || || || | || ||||| Sbjct 14901013 CCATTGGGGTGTGACAGGCTTTCAGTGCTGTTCTCAATCCCTGACCCATCCACCTTCCAG 14901072 Query 171680 AATATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAG 171739 |||| || ||||| | |||||||||||||| || || ||||| ||||| ||| Sbjct 14901073 TTGATAATGGGGGCTGGACGGGCAGTAGCAGAGCAGGTGATATTTAAGTGGTCTTCAAAG 14901132 Query 171740 AA 171741 || Sbjct 14901133 AA 14901134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578283776800000