Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq143 102 8e-17 seq38 93.3 4e-14 seq140 91.5 1e-13 seq16 89.7 5e-13 seq3 86.0 6e-12 seq20 84.2 2e-11 >seq143 Length=9160510 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||| ||||| || | | | || ||||| || ||||||||||| || || || Sbjct 9115215 CAAACGCAGGACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGTGTGCG 9115156 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | ||||| |||||||| || | | |||| | | ||| || || ||||| |||||||| Sbjct 9115155 CTTGTCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTC 9115096 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || ||| ||| ||| | | || | || || | ||||| ||||| | || Sbjct 9115095 TTTGTCTTGAATCTTTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGT 9115036 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || |||||||||| ||||| | ||| |||||||| Sbjct 9115035 AATGGTCTTACCAGTCAAGGTTTTCACGAAGATCTGCAT 9114997 >seq38 Length=23493148 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || ||| || |||||| || || || || | | Sbjct 5890905 GACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCA 5890964 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | ||| ||||| ||||| || ||||| ||||| || || || | Sbjct 5890965 AAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 5891024 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || | || |||| || | ||| || || ||||| |||||| Sbjct 5891025 TTTTCGATCGTATCCGAGGGTTTGACCTCGAGAGTGATCGTCTTCCCCGTCAGGGTTTTT 5891084 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 5891085 AAGAAAATCTGCAT 5891098 >seq140 Length=9235476 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| || ||||| | |||||||||||||||||| || ||||| || ||||| ||| Sbjct 5949798 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTG 5949857 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 || |||||||| || | |||||| ||||||||||||| Sbjct 5949858 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGG 5949895 >seq16 Length=33020160 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || ||| || |||||| || || ||||| | | Sbjct 11074185 GACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGTTGCTTACCAGCA 11074126 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | ||| ||||| ||||| || ||||| ||||| || || || | Sbjct 11074125 AAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 11074066 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | || || || |||| || | ||| || || || || ||||| Sbjct 11074065 TTTTTGATTGTATCTGAGGGTTCGACCTCGAGAGTGATCGTCTTCCCCGTTAGGTTTTTT 11074006 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 11074005 ACGAAAATCTGCAT 11073992 >seq3 Length=52730029 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/194 (70%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || ||| | |||||| || || || || | | Sbjct 39783101 GACTCCTTTTGAATGTTGTAGTCAGACAGGGTGTGTCCATCTTCCAGTTGCTTGCCAGCA 39783160 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | ||| ||||| ||||| || ||||| ||||| || || || | Sbjct 39783161 GAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 39783220 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||||| |||| | || || || | || || | ||| || || || || |||||| Sbjct 39783221 TTTTCCA-TCTATCCGAGGGTTCGACCTTGAGAGTGATCGTCTTCCCCGTTAGCGTTTTT 39783279 Query 132110 ATGAAAATCTGCAT 132123 |||||||||||||| Sbjct 39783280 ATGAAAATCTGCAT 39783293 >seq20 Length=29555478 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||||||||||||||| || ||| || |||||| || || | || | | Sbjct 26628050 GACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGTTGCTCGCCAGCA 26627991 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || || | ||| ||||| ||||| || ||||| |||| || || || | Sbjct 26627990 AAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATGCTGGATCTTGGCCTTTACA 26627931 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || || |||| || | ||| || || || || |||||| Sbjct 26627930 TTTTCGATTGTATCTGAGGGTTCGACCTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTT 26627871 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 26627870 ACGAAAATCTGCAT 26627857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476489068380000