Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq143 102 8e-17
seq38 93.3 4e-14
seq140 91.5 1e-13
seq16 89.7 5e-13
seq3 86.0 6e-12
seq20 84.2 2e-11
>seq143
Length=9160510
Score = 102 bits (112), Expect = 8e-17
Identities = 154/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964
||| |||| ||||| || | | | || ||||| || ||||||||||| || || ||
Sbjct 9115215 CAAACGCAGGACCAAGTGCAGGGTAGATTCTTTCTGGATGTTGTAGTCAGACAGTGTGCG 9115156
Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024
| ||||| |||||||| || | | |||| | | ||| || || ||||| ||||||||
Sbjct 9115155 CTTGTCTTCCAGCTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCAGGAGGGATGCCTTC 9115096
Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084
||| || ||| ||| ||| | | || | || || | ||||| ||||| | ||
Sbjct 9115095 TTTGTCTTGAATCTTTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGT 9115036
Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
| || |||||||||| ||||| | ||| ||||||||
Sbjct 9115035 AATGGTCTTACCAGTCAAGGTTTTCACGAAGATCTGCAT 9114997
>seq38
Length=23493148
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| ||||||||||||||||| || ||| || |||||| || || || || | |
Sbjct 5890905 GACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGTTGCTTGCCAGCA 5890964
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
| || || | ||| ||||| ||||| || ||||| ||||| || || || |
Sbjct 5890965 AAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 5891024
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| ||| | ||||| | || | || |||| || | ||| || || ||||| ||||||
Sbjct 5891025 TTTTCGATCGTATCCGAGGGTTTGACCTCGAGAGTGATCGTCTTCCCCGTCAGGGTTTTT 5891084
Query 132110 ATGAAAATCTGCAT 132123
| ||||||||||||
Sbjct 5891085 AAGAAAATCTGCAT 5891098
>seq140
Length=9235476
Score = 91.5 bits (100), Expect = 1e-13
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564
|||| || ||||| | |||||||||||||||||| || ||||| || ||||| |||
Sbjct 5949798 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTG 5949857
Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602
|| |||||||| || | |||||| |||||||||||||
Sbjct 5949858 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGG 5949895
>seq16
Length=33020160
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| ||||||||||||||||| || ||| || |||||| || || ||||| | |
Sbjct 11074185 GACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGTTGCTTACCAGCA 11074126
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
| || || | ||| ||||| ||||| || ||||| ||||| || || || |
Sbjct 11074125 AAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 11074066
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | ||||| | || || || |||| || | ||| || || || || |||||
Sbjct 11074065 TTTTTGATTGTATCTGAGGGTTCGACCTCGAGAGTGATCGTCTTCCCCGTTAGGTTTTTT 11074006
Query 132110 ATGAAAATCTGCAT 132123
| ||||||||||||
Sbjct 11074005 ACGAAAATCTGCAT 11073992
>seq3
Length=52730029
Score = 86.0 bits (94), Expect = 6e-12
Identities = 136/194 (70%), Gaps = 1/194 (1%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| ||||||||||||||||| || ||| | |||||| || || || || | |
Sbjct 39783101 GACTCCTTTTGAATGTTGTAGTCAGACAGGGTGTGTCCATCTTCCAGTTGCTTGCCAGCA 39783160
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
| || || | ||| ||||| ||||| || ||||| ||||| || || || |
Sbjct 39783161 GAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 39783220
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| ||||| |||| | || || || | || || | ||| || || || || ||||||
Sbjct 39783221 TTTTCCA-TCTATCCGAGGGTTCGACCTTGAGAGTGATCGTCTTCCCCGTTAGCGTTTTT 39783279
Query 132110 ATGAAAATCTGCAT 132123
||||||||||||||
Sbjct 39783280 ATGAAAATCTGCAT 39783293
>seq20
Length=29555478
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| ||||||||||||||||| || ||| || |||||| || || | || | |
Sbjct 26628050 GACTCCTTTTGAATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGTTGCTCGCCAGCA 26627991
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
| || || | ||| ||||| ||||| || ||||| |||| || || || |
Sbjct 26627990 AAAATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATGCTGGATCTTGGCCTTTACA 26627931
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| ||| | ||||| | || || || |||| || | ||| || || || || ||||||
Sbjct 26627930 TTTTCGATTGTATCTGAGGGTTCGACCTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTT 26627871
Query 132110 ATGAAAATCTGCAT 132123
| ||||||||||||
Sbjct 26627870 ACGAAAATCTGCAT 26627857
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476489068380000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |