Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq381 104 7e-19
seq281 102 3e-18
seq409 98.7 3e-17
seq213 98.7 3e-17
seq5 98.7 3e-17
seq52 96.9 1e-16
seq99 93.3 1e-15
seq12 87.8 6e-14
seq16 86.0 2e-13
seq22 84.2 7e-13
seq182 80.6 8e-12
>seq381
Length=2024596
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1266556 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1266615
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1266616 CCGGGTTTCGGC 1266627
>seq281
Length=3633602
Score = 102 bits (112), Expect = 3e-18
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 144716 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 144657
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 144656 TCCCGGGTTTCGGC 144643
>seq409
Length=1653301
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1368753 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1368694
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1368693 CCGGGTTTCGGC 1368682
>seq213
Length=5512515
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1224594 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1224653
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1224654 CCGGGTTTCGGC 1224665
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 2338909 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2338968
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2338969 CCGGGTTTCGGC 2338980
Score = 95.1 bits (104), Expect = 4e-16
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| ||||||| |||||||||||||||||||||| | |
Sbjct 1408911 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTAAAGATCTAAAGGTCCCTGGTTCGATC 1408970
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1408971 CCGGGTTTCGGC 1408982
Score = 84.2 bits (92), Expect = 7e-13
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832
|| |||||||||| |||||| |||||||||||||||||||||| |||||||||||| ||
Sbjct 1415037 AAATAGCTCAGTTTGGAGAGTGTTAGACTGAAGATCTAAAGGTCTCTGGTTCAACCCTGG 1415096
Query 2833 GCTT 2836
| ||
Sbjct 1415097 GTTT 1415100
Score = 82.4 bits (90), Expect = 2e-12
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| ||||||||||||||||| ||||||| |||||||||||||||||||| | |
Sbjct 1388793 GCTGAAATAGCTCAGTTGGGAGAGTGTTAGACTCTAGATCTAAAGGTCCCTGGTTTGATC 1388852
Query 2829 CCGGGCTT 2836
| ||||||
Sbjct 1388853 CTGGGCTT 1388860
>seq5
Length=45607681
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 18776438 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 18776497
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 18776498 CCGGGTTTCGGC 18776509
>seq52
Length=19193943
Score = 96.9 bits (106), Expect = 1e-16
Identities = 64/71 (90%), Gaps = 0/71 (0%)
Strand=Plus/Minus
Query 2770 CTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCC 2829
||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 8736638 CTGAAATAGCGCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCC 8736579
Query 2830 CGGGCTTCAGC 2840
| || ||| ||
Sbjct 8736578 CAGGTTTCGGC 8736568
>seq99
Length=12215380
Score = 93.3 bits (102), Expect = 1e-15
Identities = 59/64 (92%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||||||| || |||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 775695 TGGCTGAAATAACTCAGTTGGGAGAGCATTAGACTGAAGACCTAAAGATCCCTGGTTCAA 775636
Query 2827 CCCC 2830
|||
Sbjct 775635 TCCC 775632
>seq12
Length=37268909
Score = 87.8 bits (96), Expect = 6e-14
Identities = 62/70 (89%), Gaps = 1/70 (1%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 32059447 TGGC-GAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTTGA 32059389
Query 2827 CCCCGGGCTT 2836
||||| ||
Sbjct 32059388 TGCCGGGTTT 32059379
>seq16
Length=33020160
Score = 86.0 bits (94), Expect = 2e-13
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824
|||||| || |||||||||| |||||| ||| ||||||||||||||||||||||||||
Sbjct 15212074 TATGGCCAAAATAGCTCAGTTAGGAGAGTGTTAAACTGAAGATCTAAAGGTCCCTGGTTC 15212015
Query 2825 AACCCCGGGCTTCAG 2839
| ||| || |||||
Sbjct 15212014 GATCCCAGGTTTCAG 15212000
>seq22
Length=29365756
Score = 84.2 bits (92), Expect = 7e-13
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831
||| |||| |||||||||||| |||||||||||||||||||||||| |||| | ||||
Sbjct 23941866 GAAATAGCCCAGTTGGGAGAGAGTTAGACTGAAGATCTAAAGGTCCCCGGTTGGATCCCG 23941925
Query 2832 GGCTTCAGC 2840
| |||||||
Sbjct 23941926 GTCTTCAGC 23941934
>seq182
Length=6939532
Score = 80.6 bits (88), Expect = 8e-12
Identities = 61/72 (85%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||| | |||||||||||||||||||||| ||||||||||||||| |||||||| | |
Sbjct 4365755 GCTGCAACAGCTCAGTTGGGAGAGCATTAGGCTGAAGATCTAAAGGCCCCTGGTTTGATC 4365696
Query 2829 CCGGGCTTCAGC 2840
| ||| ||| ||
Sbjct 4365695 CTGGGTTTCGGC 4365684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15846046222500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |