Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq381 104 7e-19 seq281 102 3e-18 seq409 98.7 3e-17 seq213 98.7 3e-17 seq5 98.7 3e-17 seq52 96.9 1e-16 seq99 93.3 1e-15 seq12 87.8 6e-14 seq16 86.0 2e-13 seq22 84.2 7e-13 seq182 80.6 8e-12 >seq381 Length=2024596 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1266556 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1266615 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1266616 CCGGGTTTCGGC 1266627 >seq281 Length=3633602 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 144716 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 144657 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 144656 TCCCGGGTTTCGGC 144643 >seq409 Length=1653301 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1368753 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1368694 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1368693 CCGGGTTTCGGC 1368682 >seq213 Length=5512515 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1224594 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1224653 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1224654 CCGGGTTTCGGC 1224665 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2338909 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2338968 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2338969 CCGGGTTTCGGC 2338980 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| ||||||| |||||||||||||||||||||| | | Sbjct 1408911 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTAAAGATCTAAAGGTCCCTGGTTCGATC 1408970 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1408971 CCGGGTTTCGGC 1408982 Score = 84.2 bits (92), Expect = 7e-13 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||| |||||| |||||||||||||||||||||| |||||||||||| || Sbjct 1415037 AAATAGCTCAGTTTGGAGAGTGTTAGACTGAAGATCTAAAGGTCTCTGGTTCAACCCTGG 1415096 Query 2833 GCTT 2836 | || Sbjct 1415097 GTTT 1415100 Score = 82.4 bits (90), Expect = 2e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||| ||||||| |||||||||||||||||||| | | Sbjct 1388793 GCTGAAATAGCTCAGTTGGGAGAGTGTTAGACTCTAGATCTAAAGGTCCCTGGTTTGATC 1388852 Query 2829 CCGGGCTT 2836 | |||||| Sbjct 1388853 CTGGGCTT 1388860 >seq5 Length=45607681 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 18776438 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 18776497 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 18776498 CCGGGTTTCGGC 18776509 >seq52 Length=19193943 Score = 96.9 bits (106), Expect = 1e-16 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2770 CTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCC 2829 ||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 8736638 CTGAAATAGCGCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCC 8736579 Query 2830 CGGGCTTCAGC 2840 | || ||| || Sbjct 8736578 CAGGTTTCGGC 8736568 >seq99 Length=12215380 Score = 93.3 bits (102), Expect = 1e-15 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||| || |||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 775695 TGGCTGAAATAACTCAGTTGGGAGAGCATTAGACTGAAGACCTAAAGATCCCTGGTTCAA 775636 Query 2827 CCCC 2830 ||| Sbjct 775635 TCCC 775632 >seq12 Length=37268909 Score = 87.8 bits (96), Expect = 6e-14 Identities = 62/70 (89%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 32059447 TGGC-GAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTTGA 32059389 Query 2827 CCCCGGGCTT 2836 ||||| || Sbjct 32059388 TGCCGGGTTT 32059379 >seq16 Length=33020160 Score = 86.0 bits (94), Expect = 2e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 |||||| || |||||||||| |||||| ||| |||||||||||||||||||||||||| Sbjct 15212074 TATGGCCAAAATAGCTCAGTTAGGAGAGTGTTAAACTGAAGATCTAAAGGTCCCTGGTTC 15212015 Query 2825 AACCCCGGGCTTCAG 2839 | ||| || ||||| Sbjct 15212014 GATCCCAGGTTTCAG 15212000 >seq22 Length=29365756 Score = 84.2 bits (92), Expect = 7e-13 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831 ||| |||| |||||||||||| |||||||||||||||||||||||| |||| | |||| Sbjct 23941866 GAAATAGCCCAGTTGGGAGAGAGTTAGACTGAAGATCTAAAGGTCCCCGGTTGGATCCCG 23941925 Query 2832 GGCTTCAGC 2840 | ||||||| Sbjct 23941926 GTCTTCAGC 23941934 >seq182 Length=6939532 Score = 80.6 bits (88), Expect = 8e-12 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| | |||||||||||||||||||||| ||||||||||||||| |||||||| | | Sbjct 4365755 GCTGCAACAGCTCAGTTGGGAGAGCATTAGGCTGAAGATCTAAAGGCCCCTGGTTTGATC 4365696 Query 2829 CCGGGCTTCAGC 2840 | ||| ||| || Sbjct 4365695 CTGGGTTTCGGC 4365684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15846046222500