Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19]
20,500 sequences; 4,210,110,458 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq172 102 7e-17
seq8 89.7 5e-13
>seq172
Length=7263250
Score = 102 bits (112), Expect = 7e-17
Identities = 157/222 (71%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230
||| ||| | | || |||||||| ||||||| || ||||||| |||| |||||| |
Sbjct 739994 CAAGATGAAGATTTTCGTAAAAACCCTAACCGGGAAGACGATCACTCTCGAGGTCGAACC 740053
Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290
| ||||| || | | ||||| || || ||||| || || || || || ||
Sbjct 740054 CTCGGATACAATAAAAAATGTAAAGGCCAAGATCCATGATAAGGAAGGAATTCCTCCTGA 740113
Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGAT 25348
|||||| ||||| |||| | ||||| ||||| ||||||| | | |||| | |
Sbjct 740114 TCAGCAGAGACTGATTTTTGCTGGCAAGCAACTAGAAGATGGACGCACCCTGTCTG--AC 740171
Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390
|||||||||||||| || ||||| ||||| | ||||| |||
Sbjct 740172 TACAATATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGA 740213
>seq8
Length=38990876
Score = 89.7 bits (98), Expect = 5e-13
Identities = 154/222 (69%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230
||| ||||| | ||||||||||| |||| || || |||||| |||| |||||| |
Sbjct 3001442 CAAGATGCAGATTTTTGTAAAAACCCTAACGGGGAAGATGATCACTCTCGAGGTCGAACC 3001501
Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290
| ||||| ||| | | ||||| || || ||||| || || || | || ||
Sbjct 3001502 CTCGGATACGATCAAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTTCTCCTGA 3001561
Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGAT 25348
|||||| ||| | |||| | ||||| ||||| |||| || | | |||| ||
Sbjct 3001562 TCAGCAGAGATTGATTTTTGCTGGCAAGCAACTGGAAGTTGGACGCACCCTGTC--TGAC 3001619
Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390
||||| |||||||| || ||||| ||||| | ||||| |||
Sbjct 3001620 TACAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGA 3001661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444980344560000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |