Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq99 95.1 1e-14 seq451 91.5 1e-13 seq170 91.5 1e-13 seq26 91.5 1e-13 seq53 87.8 2e-12 seq78 86.0 5e-12 seq126 84.2 2e-11 seq172 82.4 6e-11 seq66 82.4 6e-11 seq45 82.4 6e-11 seq31 82.4 6e-11 >seq99 Length=12215380 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| |||| || | || || ||||| || || |||||||| Sbjct 7048509 TGCCACCACGCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 7048450 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | ||| || || || |||| |||||| || |||| ||| ||||||| || || | Sbjct 7048449 AGAGAGTGCAGTCATCCTCCAGCTATTTACCAGCAAAAATCAGATGCTGTTGGTCAGGGG 7048390 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| || || ||| ||| ||| | | || | ||||| || || | Sbjct 7048389 GGATACCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGAGCTCCA 7048330 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 | || ||||| || | ||||||||||| || || |||||||| ||||| |||| Sbjct 7048329 CCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTTACAAAGATCTGCATCTCTGC 7048275 >seq451 Length=1225386 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| | || |||||||| | |||| | || || ||||||||||| Sbjct 1000177 GTGGACTCTTTCTAGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTACCC 1000236 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| |||||||| || || || || | |||||| || || ||| ||| ||| Sbjct 1000237 GCAAAAATCAGACGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTGGATTTTGGCTTTG 1000296 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| ||||| | | || || || ||||| || | ||||| ||||| || Sbjct 1000297 ACATTCTCTATGGTGTCACTAGGCTCCACCTCAAGAGTAATGGTCTTGCCTGTCAGGGTC 1000356 Query 27231 TTCACAAAGATTTGCATAGCTGC 27253 ||||||||||| ||||| |||| Sbjct 1000357 TTCACAAAGATCTGCATCTCTGC 1000379 >seq170 Length=7561184 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || ||| |||| |||| || | || || ||||| || || |||||||| Sbjct 6053195 TGCCACCACGCTGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 6053254 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | || || ||||||||||| || ||| || |||| || || |||| Sbjct 6053255 AGAGAGTGCGGCCATCCTCCAGCTGTTTACCTGCAAAAACCAGCAGCTGCTGGTCAGGCG 6053314 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 ||| |||||| || || ||| ||| ||| | | || | ||||| ||| || | Sbjct 6053315 GCATACCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCCA 6053374 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 | || ||||| || | |||| |||||| || ||||||||||| || || |||| Sbjct 6053375 CCTCAAGAGTGATGGTCTTGCTCGTCAGGGTCTTCACAAAGATCTGTATCTCTGC 6053429 >seq26 Length=26594169 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||| ||| |||| |||| || | || || ||||| || ||||||||||| Sbjct 3632820 CCTCCGTGCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTGTGGATATTGTAGTCTGAG 3632879 Query 27081 ATGTTGCG-CTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| || | || ||||||||||| || |||| |||||||| || || | || Sbjct 3632880 AGAGTGCGGCTATCCGTC-AGCTGTTTACCCGCAAAAATCAGACGCTGCTGGTCAGTGGG 3632938 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| || || ||| ||| ||| | | || | ||||| ||| || || Sbjct 3632939 GATACCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCAC 3632998 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 || ||||| || | ||| ||||||| || ||||||||||| ||| | |||| Sbjct 3632999 CTCAAGAGTGATGGTCTTGTCCGTCAGGGTCTTCACAAAGATCTGCCTCTCTGC 3633052 >seq53 Length=19262973 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | |||| | || || ||||||||||| Sbjct 11236679 GTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTACCT 11236738 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| |||||||| || || || || | |||||| || || ||| ||| ||| Sbjct 11236739 GCAAAAATCAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCTTGGATTTTGGCTTTG 11236798 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| ||| || || || ||||| || | ||||| ||||| | Sbjct 11236799 ACATTCTCGATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCTGTCAGGGCC 11236858 Query 27231 TTCACAAAGATTTGCATAGCTGC 27253 ||||||||||| ||||| |||| Sbjct 11236859 TTCACAAAGATCTGCATCTCTGC 11236881 >seq78 Length=14163838 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| | |||| |||| |||| ||| | || || ||||| || || |||||||| Sbjct 4568723 TGCCATCACGCAGACGCAGCACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 4568782 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | || || |||||||||| || |||| |||||||||| || || Sbjct 4568783 AGAGAGTGCGGCCATCCTCCTGCTGTTTACCCGCAAAAATCAGACGCTGTTTGTCAGGGA 4568842 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||| ||| ||| | | | | ||||| ||| || | Sbjct 4568843 GGATACCCTACTTGTCTTGGATTTTGGCTTTGATATTCTGGATGGTGTCACTGGGCTCCA 4568902 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 | || |||| || | ||||||||||| || ||||||||||| ||||| |||| Sbjct 4568903 CCTCAGGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCTGC 4568957 >seq126 Length=9965562 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| |||| || | || || ||||| || || |||||||| Sbjct 8584645 TGCCACCACGCAGACGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 8584704 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | || || |||||| |||| | |||| ||| |||| || || || | Sbjct 8584705 AGAGAGTGCGGCCATCCTCCAGCTGTGTACCCTCAAAAATCAGATGCTGCTGGTCAGGGG 8584764 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| || || ||| ||| ||| | | || | ||||| ||| || | Sbjct 8584765 GGATACCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCA 8584824 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | ||||| |||| || ||||||||||| ||||| Sbjct 8584825 CCTCAAGAGTGATGGTCTTGCCTGTCAAGGTCTTCACAAAGATCTGCAT 8584873 >seq172 Length=7263250 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | | ||| || | ||| | || || || ||||||||||||||||| Sbjct 740225 GCCACCGCGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATATTGTAGTCAGA 740166 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | |||| | ||||| || || || || || |||| || | ||| ||||| || || Sbjct 740165 CAGGGTGCGTCCATCTTCTAGTTGCTTGCCAGCAAAAATCAGTCTCTGCTGATCAGGAGG 740106 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || ||||| ||||||| || | ||| || || || | || ||| || Sbjct 740105 AATTCCTTCCTTATCATGGATCTTGGCCTTTACATTTTTTATTGTATCCGAGGGTTCGAC 740046 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || || || || ||||| || || || | ||| Sbjct 740045 CTCGAGAGTGATCGTCTTCCCGGTTAGGGTTTTTACGAAAATCTTCAT 739998 >seq66 Length=17239560 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| || | || || ||||| || || |||||||| | | || | Sbjct 7151398 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTTCGGCCA 7151339 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||||||||| || |||| ||||| || || || || | | |||||| || Sbjct 7151338 TCCTCCAGCTGTTTACCCGCAAAAATCAGACGTTGCTGGTCAGGGAGGATACCCTCCTTG 7151279 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||| ||| ||| | | || | |||| ||| || || || ||||| || Sbjct 7151278 TCTTGGATTTTGGCTTTGACATTCTCGATGATGTCACTGGGCTCCACCTCAAGAGTGATG 7151219 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||||||||| || ||||||||||| ||||| Sbjct 7151218 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 7151184 >seq45 Length=21324102 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || |||||||| | |||| | || || ||||||||| | Sbjct 18625455 GTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTAGCC 18625396 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || ||| ||||||| ||||| || || | ||||| || || ||| ||| ||| Sbjct 18625395 GCAAAAACCAGACGCTCCTGATCAGGGGGGATACCCTACTTGTCTTGGATTTTGGCTTTG 18625336 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | | ||||| ||| || || || ||||| || | ||||||||||| || Sbjct 18625335 ACATTCTTGATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTC 18625276 Query 27231 TTCACAAAGATTTGCATAGCTGC 27253 ||||||||||| ||||| |||| Sbjct 18625275 TTCACAAAGATCTGCATCTCTGC 18625253 >seq31 Length=26307832 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| |||| |||| | | || || ||||| || || |||||||| Sbjct 23303230 TGCCACCACGCAGACGCAGAACCAGGGGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 23303289 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | || || |||||||||| || |||| |||||||| || || | | Sbjct 23303290 AGAGAATGCGGACATCCTCCAGCTGTTTACTCGCAAAAATCAGACGCTGCTGGTCAGTGG 23303349 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| || || ||| ||| ||| | | | | ||||| | | || | Sbjct 23303350 GGATACCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTGGATGGTGTCACTAGGCTCCA 23303409 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 | || || || || | ||||||||||| || ||||||||||| ||||| |||| Sbjct 23303410 CCTCAAGGGTAATGGGCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCTCTGC 23303464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424828232796000