Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chrysochloris_20asiatica_20[refseq_20GCF_5F000296735.1_202012-09-19] 20,500 sequences; 4,210,110,458 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7 104 3e-17 seq30 95.1 1e-14 seq131 84.2 2e-11 seq58 84.2 2e-11 >seq7 Length=39982324 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| ||||||||||||| || | |||||| || || Sbjct 25627201 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTCGTACCAAACTGA 25627260 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||||||||| || || ||| ||||||||| || |||||||| |||| | Sbjct 25627261 CCAATAGGCTGCAAGAGGTTTAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 25627320 Query 117425 ATCGT 117429 || || Sbjct 25627321 ATGGT 25627325 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| ||||| ||| |||||||| Sbjct 25627201 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTCGTACCAAACTGA 25627260 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| | |||||| || || ||| |||||| ||||||||||||||||| | | Sbjct 25627261 CCAATAGGCTGCAAGAGGTTTAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTGATA 25627320 Query 152149 ATCGT 152153 || || Sbjct 25627321 ATGGT 25627325 >seq30 Length=26211398 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| |||||||| ||| || || || || || Sbjct 15923285 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCGTGAAGCCGAGTTCCAAACTGA 15923226 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||||| |||||||| || ||| Sbjct 15923225 CCAATAGGCTGAAGTAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 15923166 Query 117425 ATCGT 117429 || || Sbjct 15923165 ATAGT 15923161 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 15923285 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCGTGAAGCCGAGTTCCAAACTGA 15923226 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | |||||| ||||| || |||||||||||||||||| Sbjct 15923225 CCAATAGGCTGAAGTAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 15923166 Query 152149 ATCGT 152153 || || Sbjct 15923165 ATAGT 15923161 >seq131 Length=9795181 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | || |||||||| ||||| |||||||| Sbjct 9778494 TCATCTCTGCTAATAAGTTCATTAGAAAATGTCAGACCAGGCATTAGTCCTCGCTTCTTG 9778553 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || || | || |||||| |||||||| ||||| || |||||||| Sbjct 9778554 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCT 9778613 Query 74892 ACAA 74895 |||| Sbjct 9778614 ACAA 9778617 >seq58 Length=18876681 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | || |||||||| ||||| |||||||| Sbjct 18847691 TCATCTCTGCTAATAAGTTCATTAGAAAATGTCAGACCAGGCATTAGTCCTCGCTTCTTG 18847632 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || || | || |||||| |||||||| ||||| || |||||||| Sbjct 18847631 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACTGCTGCAAAGGCT 18847572 Query 74892 ACAA 74895 |||| Sbjct 18847571 ACAA 18847568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547075775900000